enzymes as biological catalysts nomenclature and names of enzymes nature of enzymes enzyme...
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Enzymes as Biological Catalysts Nomenclature and Names of Enzymes Nature of Enzymes Enzyme Cofactors Classification of Enzymes Mechanism of Action Enzyme Specificity Enzyme Catalyzed Reaction
Enzymes
Large molecules which most are proteins Activity lost if denatured Catalysts for biological reactions Have unique three-dimensional shapes
that fit the shapes of reactants. They remain unchanged at the end of the
reaction
Enzymes
Enzymes are Biological Catalysts
Enzymes are proteins that: Increase the rate of reaction by lowering the energy
of activation. Catalyze nearly all the chemical reactions taking
place in the cells of the body.
The name of an enzyme: Usually ends in –ase. Identifies the reacting substance.
Sucrase catalyzes the hydrolysis of sucrose. Lipase catalyzes the hydrolysis of lipids.
Describes the function of the enzyme. Oxidases catalyze oxidation. Hydrolases catalyze hydrolysis.
Could be a common name, particularly for the digestion enzymes such as pepsin and trypsin.
Nomenclature and Names of Enzymes
Simple enzymes:composed of whole protein e. g. Ribonuclease
Complex enzymes:composed of protein PLUS a relatively small organic / inorganic compound
Nature of Enzymes
Holoenzyme:(Apoenzymes + Prosthetic group / Coenzyme /
Cofactor) A prosthetic group describes a small organic
molecule bound to apoenzyme by covalent bond Coenzyme: When the binding between the
apoenzyme and non-protein components is non-covalent bond, the small organic molecule is called a coenzyme, e. g FAD [Flavine Adenine Dinucleotide] and vitamin B-complex .
Cofactor: Inorganic compounds (e.g. metal ions such as Fe++, Zn++ or Cu++) can be bound to the enzyme and are called cofactors
Nature of Enzymes
Enzyme Cofactors• A simple enzyme is an active enzyme that consists
only of protein.• Many enzymes are active only when they combine
with cofactors such as metal ions or small molecules.
• A coenzyme is a cofactor that is a small organic molecule such as a vitamin.
Metal Ions as Cofactors
• Many active enzymes require a metal ion.• Zn2+, a cofactor for carboxypeptidase, stabilizes the
carbonyl oxygen during the hydrolysis of a peptide bond.
Enzymes are classified according to the reaction they catalyze.
Classification of Enzymes
Reactions catalyzed Class
Oxidation-reduction. Add or remove hydrogen atoms. Oxidoreductases
Transfer groups or atoms between donor and acceptor molecules. Transferases
Hydrolysis by adding water across a bond. Hydrolases
Add/remove atoms to/from a double bond.
(Adding water, ammonia, or carbon dioxide across double bonds or remove them forming double bonds).
Lyases
Rearrange atoms Isomerases
Two chemical groups are joined (or ligated) with the use of energy from ATP Ligases
Oxidoreductases
Include all enzymes that catalyze oxidation reduction reaction between two substrates Dehydrogenases Oxidases Reductases
Transferases
Catalyze the transfer of a functional group from one molecule (donor) to another (acceptor) Transaminases catalyze transfer of an amino
group
Kinases (phosphotransferases) catalyze transfer a phosphate group
Active Site Is a region within an enzyme that fits the shape of
molecules called substrates.
Contains amino acid R groups that align and bind the substrate.
Releases products when the reaction is complete.
Mechanism of Action
Lock & Key Model
In the lock-and-key model of enzyme action: The active site has a rigid shape. Only substrates with the matching shape can fit. The substrate is a key that fits the lock of the active
site.
Induced-fit Model
In the induced-fit model of enzyme action: The active site is flexible, not rigid. The shapes of the enzyme, active site, and
substrate adjust to maximum the fit, which improves catalysis.
There is a greater range of substrate specificity.
Enzymes may recognize and catalyze: A single substrate. A group of similar substrates. A particular type of bond.
Enzyme Specificity
Isoenzymes Isoenzymes catalyze the same reaction in different
tissues in the body. Lactate dehydrogenase, which converts lactate to
pyruvate, (LDH) consists of five isoenzymes.
Enzyme Catalyzed Reaction
The proper fit of a substrate (S) in an active site forms an enzyme-substrate (ES) complex.
E + S ES Within the ES complex, the reaction occurs to
convert substrate to product (P).ES E + P
The products, which are no longer attracted to the active site, are released.
Overall, substrate is convert to product. E + S ES E + P
Enzyme Catalyzed Reaction
K1 [E][S]=K-1[ES] +K2 [ES]
Keq = K1 [E] [S]-K-1[ES] -K2[ES]= 0
Michaelis-Menten equationV° = Vmax [S]/[S]+Km
Michaelis-Menten ConstantKm = K2 + K-1 / K1
PEESSE 2
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