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Supplementary Fig. 2 Maximum-parsimony phylogenetic tree based on 16S rRNA gene sequences showing the positions of Aquinexus lipolyticus SSK1-4 T and representatives of some other related taxa. Stappia stellulata IAM 12621 T (GenBank accession number, D88525) was used as an outgroup. Scale bar, 0.01 substitutions per nucleotide position. 0.01 Rhodobacter sphaeroides 2.4.1 T (X53853) Rhodobacter megalophilus JA194 T (AM421024) Haematobacter missouriensis CCUG 52307 T (DQ342315) Albidovulum inexpectatum FRR-10 T (AF465833) Rhodobaca bogoriensis LBB1 T (AF248638) Rhodobacter veldkampii ATCC 35703 T (D16421) Paenirhodobacter enshiensis DW2-9 T (JN797511) Rhodobacter capsulatus ATCC 11166 T (D16428) Paracoccus denitrificans ATCC 17741 T (Y16927) Paracoccus aminophilus ATCC 49673 T (AY014176) Paracoccus saliphilus YIM 90738 T (DQ923133) Rhodobacter vinaykumarii JA123 T (AM408117) Thioclava pacifica TL 2 T (AY656719) Thioclava dalianensis DLFJ1-1 T (JQ844756) Rhodovulum kholense JA297 T (AM748927) Rhodovulum marinum JA128 T (AJ891122) Rhodovulum iodosum N1 T (Y15011) Rhodovulum steppense A-20s T (EU741680) Rhodovulum sulfidophilum DSM 1374 T (D16423) Confluentimicrobium lipolyticum SSK1-4 T (KJ889015) Roseovarius halotolerans HJ50 T (EU431217) Roseovarius litoreus GSW-M15 T (JQ390520) Marinovum algicola ATCC 51440 T (X78315) Roseovarius tolerans EL-172 T (Y11551) Roseovarius mucosus DFL-24 T (AJ534215) Ruegeria atlantica IAM 14463 T (D88526) Ruegeria lacuscaerulensis ITI-1157 T (U77644) Ruegeria faecimaris HD-28 T (GU057915) Ruegeria scottomollicae LMG 24367 T (AM905330) Roseobacter litoralis ATCC 49566 T (X78312) Sulfitobacter pontiacus ChLG 10 T (Y13155) Planktotalea frisia SH6-1 T (FJ882052) Pelagicola litoralis CL-ES2 T (EF192392) Pseudoruegeria aquimaris SW-255 T (DQ675021) Pseudoruegeria lutimaris HD-43 T (FJ374173) Pacificibacter maritimus KMM 9031 T (AB558927) Poseidonocella sedimentorum KMM 9023 T (AB576006) Poseidonocella pacifica KMM 9010 T (AB576005) Actibacterium mucosum R46 T (HE590855) Stappia stellulata IAM 12621 T (D88525) ‘Actibacterium atlanticum’ 22II-S11-z10 T (KJ159064) Hasllibacter halocynthiae KME 002 T (FJ638616) Wenxinia marina HY34 T (DQ640643) Rubellimicrobium thermophilum C-lvk-R2A-2 T (AJ844281)

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Supplementary Fig. 2 Maximum-parsimony phylogenetic tree based on 16S rRNA gene sequences

showing the positions of Aquinexus lipolyticus SSK1-4T and representatives of some other related taxa.

Stappia stellulata IAM 12621T (GenBank accession number, D88525) was used as an outgroup. Scale bar,

0.01 substitutions per nucleotide position.

0.01

Rhodobacter sphaeroides 2.4.1T (X53853)

Rhodobacter megalophilus JA194T (AM421024)

Haematobacter missouriensis CCUG 52307T (DQ342315)

Albidovulum inexpectatum FRR-10T (AF465833)

Rhodobaca bogoriensis LBB1T (AF248638)

Rhodobacter veldkampii ATCC 35703T (D16421)

Paenirhodobacter enshiensis DW2-9T (JN797511)

Rhodobacter capsulatus ATCC 11166T (D16428)

Paracoccus denitrificans ATCC 17741T (Y16927)

Paracoccus aminophilus ATCC 49673T (AY014176)

Paracoccus saliphilus YIM 90738T (DQ923133)

Rhodobacter vinaykumarii JA123T (AM408117)

Thioclava pacifica TL 2T (AY656719)

Thioclava dalianensis DLFJ1-1T (JQ844756)

Rhodovulum kholense JA297T (AM748927)

Rhodovulum marinum JA128T (AJ891122)

Rhodovulum iodosum N1T (Y15011)

Rhodovulum steppense A-20sT (EU741680)

Rhodovulum sulfidophilum DSM 1374T (D16423)

Confluentimicrobium lipolyticum SSK1-4T (KJ889015)

Roseovarius halotolerans HJ50T (EU431217)

Roseovarius litoreus GSW-M15T (JQ390520)

Marinovum algicola ATCC 51440T (X78315)

Roseovarius tolerans EL-172T (Y11551)

Roseovarius mucosus DFL-24T (AJ534215)

Ruegeria atlantica IAM 14463T (D88526)

Ruegeria lacuscaerulensis ITI-1157T (U77644)

Ruegeria faecimaris HD-28T (GU057915)

Ruegeria scottomollicae LMG 24367T (AM905330)

Roseobacter litoralis ATCC 49566T (X78312)

Sulfitobacter pontiacus ChLG 10T (Y13155)

Planktotalea frisia SH6-1T (FJ882052)

Pelagicola litoralis CL-ES2T (EF192392)

Pseudoruegeria aquimaris SW-255T (DQ675021)

Pseudoruegeria lutimaris HD-43T (FJ374173)

Pacificibacter maritimus KMM 9031T (AB558927)

Poseidonocella sedimentorum KMM 9023T (AB576006)

Poseidonocella pacifica KMM 9010T (AB576005)

Actibacterium mucosum R46T (HE590855)

Stappia stellulata IAM 12621T (D88525)

‘Actibacterium atlanticum’ 22II-S11-z10T (KJ159064)

Hasllibacter halocynthiae KME 002T (FJ638616)

Wenxinia marina HY34T (DQ640643)

Rubellimicrobium thermophilum C-lvk-R2A-2T (AJ844281)

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