1 w. rooney may 20, 2004 imaging the awake animal mri efforts overview
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W. RooneyMay 20, 2004
Imaging the Awake AnimalMRI Efforts Overview
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MRI EnvironmentMRI Environment
I. Static Magnetic Field
II. Radiofrequency Field
III. Magnetic Field Gradients
Fre
qu
ency
en
cod
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Phase encode
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Motion through magnetic field gradients
Larmor relation:
= B
magnetic field gradients render B is spatially dependent
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cod
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Phase encode
kx
ky
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Motion Induced RMotion Induced R22** changes changes
ΔR2* (Hz)
-3.0
+2.6-2.8-0.5
+7.5+0.3
ΔR2* (Hz)
+1.3
+1.4-0.3+0.5
-1.8+1.9
5.8 degrees
1.5 degrees
• Rotations as small as 1.5° may cause R2
*
changes similar to those during brain activation
• Lateral slices show larger R2
* changes.
• R2* changes increase for
larger angles.
ΔR2* change during
brain activation: ~ 2-3Hz
Caparelli, et al 2003
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Quantitative MRI - DifficultiesQuantitative MRI - Difficulties
Signal changes are often small (<5%)
Subject motion causes signal changes of similar magnitude, due to:
Rigid body transformation (translations & rotations)
Magnetic field changes– geometric distortions & susceptibility
Even the most advanced retrospective motion correction algorithms
fail if motion is excessive
Therefore, it is very difficult or impossible to perform MRI in awake animals sick patients and children
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Overall Goal - MRIOverall Goal - MRI
Increase 5 to 10-fold the range of
motion acceptable for susceptibility-
based functional MRI techniques.
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MRI ProjectsMRI Projects
I. Prospective motion correction in MRI
(Lead: Rooney, BNL Chemistry)
II. Dynamic prospective adjustment of main
magnetic field during MRI
(Lead: Wanderer, BNL Magnet Division)
III. Retrospective motion correction
(Lead: Ernst, BNL Medical)
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W. Rooney, X. Li, J. Mead, R. WangMay 20, 2004
Imaging the Awake AnimalProspective Motion Correction in MRI
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Prospective Motion Correction in MRIProspective Motion Correction in MRI
- MRI is extremely motion sensitive
- Post-acquisition corrections have limitations
- Dynamic adjustment of MRI acquisition possible
Specific Aims:
- develop and validate an MRI compatible motion sensing device
- design and construct electronic module to synthesize sensor output
- integrate motion sensor and electronic module into MRI instrument
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time
labframe
“brain” frame
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1 2 3
MRI is Motion SensitiveMRI is Motion Sensitive
Y
Z
X
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spatial realfrequency space
labframe
“brain” frame
lab frame
“brain” frame
Image Quality RestorationImage Quality Restoration
motion corrupted
hybrid corrected
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4
2
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Laser PSD2
TR
PSD1
ADC-DSP
Motion Tracking Compensation
Circuit
X
INPUT YZ
RFAcquisition parameters
X' Y' Z' RF
PSDPSD33
Dynamic Adjustment of MRI Acquisitions
Position sensingdetectors (PSDs)
Output to MRI instrument
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• Detector array performs superbly in MRI environment:
4 T B0, gradients (B0/ t = 30 T/s), and RF (170MHz)
• 20 μm vibration “noise” output during MRI operation
Detector Validation in MRIDetector Validation in MRIY
Positio
n (
mm
)
0
1
2
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B0 = ~0
B0 = 4 T
beam flexion (mechanical resonance)
vibration “noise”
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- LabView System (2 ADC/DAC boards, 2.4 GHz PC)
- PSD sensor array
- Inputs
3 gradient waveforms
6 PSD sensor signals
2 trigger signals
-Outputs
3 modified gradient waveforms
RF modifying signals
Motion Detection/Compensation System
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Motion Compensation System Integration
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Motion Compensation Control Panel
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Baseline MRI
5-compartment phantom
4 T whole-body MRI (GRE sequence)
Scan acquired with MRI instrument in normal configuration
Baseline 0
Test Phantom
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Baseline MRI
5-compartment phantom
4 T whole-body MRI
(GRE sequence)
Scan acquired with motion detection & compensation unit in-line
Detector in-line
Detector System Integration
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Detector in-line & analog filter & digital filter
Detector System Integration
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Baseline 0 Rotate 90ºz & invert
z
y
x
Gradient Mixing
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8º Wobble Rotation 8º Wobble w/Correction
z
y
x
Rotational Image Correction
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D. Schlyer, C. Woody, P. Vaska, W. RooneyMay 20, 2004
PET-MRI Instrumentation
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PET Detector System Test
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Detector Test in MRI Environment
Benchtop 4 T, RF dB0/dt
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PET/MRI Detector Configurations
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W. Rooney, X. Li, J. Mead, R. WangMay 20, 2004
Animal Position Tracking
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Position Sensing Detectors (PSDs)Position Sensing Detectors (PSDs)
PSDs are silicon photodiodes
Sensitive to 400-1100 nm light
Analog signal output proportional to position of light spot
Excellent linearity, resolution and response time
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Rigid Body Transformation AlgorithmRigid Body Transformation Algorithm
3 translations & 3 rotations
t = 0 t > 0
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Rotation Matrix - Accuracy (%)
Translation Accuracy (%)
0.0016 0.0003 0.0002
0.00002 0.0027 0.019
0.00004 0.00002 1.938
0.00012 1.954 0.00003
Angular accuracy < 0.1°
Accuracy < 1μm
y
xz
Computer-controlled precision motion platform (R.Ferrieri)
Precision: 0.8 m and 0.0005º
Programmable movements at 200 μm/s
Provides motion “gold standard”
Rigid Body Transformation AlgorithmRigid Body Transformation Algorithm
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Rigid-Body Motion SensorRigid-Body Motion Sensor
Sensor array Sensor output
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Sensor Input Algorithm Output
X
Y
Z
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2
3
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Rotations
Translations
Motion Tracking AlgorithmMotion Tracking Algorithm