11. nucleic acids / genes
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11. Nucleic Acids / Genes. Chapter 18. Nucleic Acids – the Master Molecules. Nucleotide:Phosphate + Sugar + Heterocycle;nucleoside: No phosphate. DNA - DeoxyriboNucleic Acid RNA - RiboNucleic Acid. A denosine. T hymidine. G uanidine. C ytidine. A Sequence of DNA. - PowerPoint PPT PresentationTRANSCRIPT
11. Nucleic Acids / Genes
Chapter 18
POHN
N
O
OH H
OO
NH2
O
HO
(OH)
Nucleic Acids – the Master MoleculesNucleotide:Phosphate + Sugar +
Heterocycle;nucleoside: No phosphate
DNA - DeoxyriboNucleic Acid RNA - RiboNucleic Acid
O
NN
OO
OP OOO
N
N N
NH
O
ONH2
N
NH
O
ON N
N
OPOO
O O
O
OP OOO
O
NH2
POO
O
NH2
A Sequence of DNA
Adenosine
Thymidine
Guanidine
Cytidine
N
NH
O
O
N
N
N
N
NHH
N
N
NH
O
H
N
N
HN
N
O
NH
Base-Pairing - the ‘Glue’ of the Double HelixThymine Adenine
Cytosine Guanine
The DNA of each human cell contains ~6 billion of these base-pairs
to ‘backbone’
DNA - Storehouse of the Genetic Code
The Double Helix
Chromosomes - chains of DNA contained in the nucleus of every cell.
Arranged in 23 pairs (of each pair, 1 set comes from sperm and 1 from egg).
Total length of these molecular threads in
each cell = ~2 meters !
When cells divide one strand from each ‘double thread/helix ’ goes to each new cell thus carrying
the identical sequence/information.
The sequence of bases A, C, T & G contains the information to direct the synthesis of all the proteins
in the body and is called the Genetic Code.
The sequence of bases, somewhere on a chromosome, that is responsible for each protein
is called a gene.
If there are only 4 ‘bases/letters’ which must uniquely code for 20 different amino acids then the
relationship cannot be 1:1 or 2:1 but must be 3:1, ie. a triplet code.
Why is this so?
• we need to code for 20 different amino acids using 4 different Bases (A,T,G,C)
• If only 2 bases used in the code, the number of possibilities is 4x4=16
• Thus if we use a sequence of 3 bases , we can code for 4x4x4=64 amino acids
RNA transforms genetic info into action
• Messenger RNA (mRNA) –carries info from DNA out of the nucleus into the cytoplasm
• Transfer RNA (tRNA) –finds and transports each amino acid to the protein synthesis site
Thymine(T) in DNA is replaced by Uracil (U) in RNA
• Thymine Uracil
But base pairing still OK
• A-U base pairs in RNA
Can you spot the error in this?
RNA contains U in place of T
• Thus, whenever U is present, must be a ribose unit (not deoxy ribose)
Codons and anticodons!
• m-RNA sends its information to t-RNA via complementary interactions between base pairs
• Thus G in m-RNA codon becomes the complementary base C in the t-RNA anticodon (and vice versa)
• A in m-RNA codon becomes U in t-RNA anticodon (and vice versa)
Lots of Possibilities!
• With 4 different bases in RNA arranged in codons of 3 bases each, total number of codons possible=4x4x4=64
• Some redundancy: ie GCA and GCC both code for the amino acid lysine
• Signal to terminate the protein chain is given by UAA, UAG or UGA
Building a new DNA Chain (Replication)
The GENETIC CODE - a Proposal and a Nobel Prize
First published by James Watson* and Francis Crick in 1953. Nobel prize awarded in 1962 to Watson,Crick and M. Wilkens (based on X-ray
results by Rosemary Carter).
* head of the World Genome Project, ~1990
-2001.
Bedtime reading: The Double Helix (J. Watson)
The Genetic Code
AUG also = start
The Human Genome contains more than 100,000 genes each of which can be 1000 - 100,000 units
(base-pairs) long ......... but ..........
this is only ~3 - 5% of the total number of units available!
Why? - maybe safety How to find? - start/stop signals
transfer RNA: with anticodon and related amino acid
anticodon
valine
a.a. binding site
The human body can repair DNA/RNA by cutting, splicing, inserting, but mutations can occur !
Mutation - any chemical or physical change that alters the nucleic acid sequence in the DNA.
May be by chemical means, radiation, etc. May be by substitution, insertion, deletion.
Every time a cell divides ~6 billion NA are matched and ~ 2000 errors occur (most are repaired).
'Aging' is thought to be due to an increased
breakdown of RNA.
Intercalation into DNA
• Planar molecules such as Polynuclear Aromatic Hydrocarbons (PNAH’s) can slide into the “grooves” in the DNA double helix, potentially causing mutations, and cancer induction
Most mutations are detrimental. If at a crucial position the defective protein will lack biological
activity, the cell/organism dies and the DNA will not be reproduced.
Non-lethal mutations often lead to metabolic abnormalities or hereditary/genetic diseases,
eg. sickle-cell anemia, hemophilia or PKU (phenylketonuria) - cannot convert Phe to Tyr (precursor of neurotransmitters); can cause severe
mental retardation.(~1 in 12,000). But can be cured/controlled if detected within 3 weeks of birth.
Cloning
• First remove the nucleus of an egg cell• Replace it in the cell by a nucleus from
body cell of a mature adult, thus producing a cell which has a full complement of chromosomes
• Induce cell division and implant into the reproductive system of a surrogate mother
CLONING
Cloned mammals
• Dolly (1st cloned mammal) UK
What about meat and milk from cloned animals?
• Is it safe to eat/drink?
• What do you think?
The US FDA thinks so!
• Jan 15, 2008 announcement
• But cloned animals are very expensive at present, thus not likely to be a major issue……yet!
Human Cloning??
• Technically possible
Cloning and Stem Cells
• Cloning of human embryonic cells is being considered for production of stem cells to treat many diseases
• Also controversial –When does life start??
Genetically Modified Food
• Selective breeding-started with Gregor Mendel’s work on peas in 1800’s
• Cross pollination or fertilization will change genetic makeup of “new organism”
• Ie. Cattle cross breeding
Santa Gertrudis cattle
• Cross breed Brahman (poor quality meat) but high resistance to heat and humidity with English shorthorn (good meat but low resistance to heat and humidity) : outcome was a new breed (Santa Gertrudis) with good quality meat and good resistance to heat and humidity
Cross breeding of Cattle
• English shorthorn (LHS)+ Brahma =• Santa Gertrudis (RHS)
Disadvantages to selective breeding
• Relatively slow and imprecise (also got cattle with poor meat and poor resistance to heat/humidity!)
• Trial and error !
Genetic Modification by DNA manipulation
• Recombinant DNA technology• Isolate the segment of DNA that encodes
for a protein conferring desirable traits• Extract the DNA segment using DNA
restriction enzymes• Copy the DNA segment using PCR
(polymerase chain reaction)
Kary Mullis (1993 Chem Nobel Prize)
• PCR!
Raw materials for PCR
• Add oligonucleotide “Primers” which hybridize to the complementary DNA strands in the region of interest
• Then DNA polymerase enzyme extends each DNA strand
DNA amplification by PCR
• Tiny amounts of DNA can be made into enough to permit analysis of the sequence
• Up to 1 million x more DNA in an hour• Valuable in forensics • A few nanograms is sufficient • GMO impossible without it!
DNA manipulation cont’d
• Then splice copies of this DNA into the cells of the organism lacking the desired trait
• New “modified DNA” then causes the organism to build the protein of interest
• Many successful and useful applications of this and some “exploitations”
Tomato plants growing in salty soil
• Traditionally tomatoes would not tolerate salty soil
• Recombinant DNA technology inserted a gene for salt tolerance, thus permitting the use of soil for agriculture that was otherwise a wasteland
Other useful modifications
• Soybeans and canola have been genetically modified to increase their content of “heart healthy” monounsaturated fatty acids
• GMO animals: 98% of GMO animals are mice:used for research
The Harvard Mouse
• The oncomouse (develops cancer)• US supreme court; it cannot be patented!
Exploitation of the technology
• “Roundup ready” corn (Monsanto)• Corn has been genetically modified to be
resistant to the herbicide “Roundup”• Thus crops can be sprayed with Roundup
and only the weeds are harmed• Monsanto has monopoly on seed
Signs of the times in Agriculture
What do you think?
• Relative benefits vs. harm of GMO foods
On balance…….
• Concerns: seeds and pollen from GMO crops disrupt others through cross pollination
• Effects on animals/insects who consume them or use them for their habitat
• Effects on humans! Unknown allergies• Products of GMO should be labelled
Labelling GE foods in Europe
Canadian “Policy”
• 2004: Feds adopted a “voluntary labelling”: result: zero labelled products!
• 2007: NDP private member’s bill calling for mandatory labelling of all GMO products in Canada
• USA: 17 states currently considering it