2011 guidelines
DESCRIPTION
Keynote for 2010 review and 2011 research perspectivesTRANSCRIPT
‣WAVe
• Research
• Development
• Publications
‣ RECOMB2010 + JBI2010 + ITAB2010 + SPGH2010 + HM (?)
‣ http://bioinformatics.ua.pt/WAVe
‣GEN2PHEN
• WAVe
• Leicester internship
‣ From relational databases to semantic web knowledge
• 2 prototype apps
‣EU-ADR
• Web Platform Preview
‣ XSD + Workflow
2010
2010
guidelines
wave{ }coeus}{ diseasecard}{ writing}{+ + +
‣Semantic Web Application Framework
• Streamlined application deployment
‣ Web server + database + configuration file = SW app
• Federation
‣ Distributed knowledge network
‣Research & Development
• Monthly release cycle
• Alpha release expected for June
‣ DiseaseCard seed
coeus
coeus
1955
CSV XMLWSSQLJS
3S DB
Package: COEUS Data, ConnectorsResult: Knowledge Seed [only data]
- Seed ready for usage
COEUS CONNECTORS
coeus
3S DB SEED
COEUS API
REST + SOAP SPARQL
WEB APP
Package: COEUS APIResult: Knowledge Seed + Web App
- App online + Seed "on garden"
1985
coeus
SEED
SEED
SEED
SEED
SEED
SEED
COEUS FEDERATION
COEUS API
REST + SOAP SPARQL
Package: COEUS FederationResult: Federated Knowledge Garden
- Distributed Knowledge Network
KNOWLEDGEGARDGEN
2015
coeus
coeus
rdfs:label
rdfs:description
Description
Shortname Entity
Concept
Item
coeus:isConnnectedTo
coeus:hasEntity
coeus:hasConcept
coeus:isAssociatedTo
coeus:isEntityOf
coeus:isConceptOf
rdfs:label
rdfs:description
Shortname
Description Concept
dc:source Item propertyBridge
rdfs:label
Shortname dc:title
Name
dc:title
Name
coeus:isConnnectedTo
coeus:isBridgedTo
coeus:hasBridge
coeus:extension
Extension
coeus:method
Bridge Method
Concept
Resource
CSV
SQL
XML
dc:sourceAddress
rdfs:labelrdfs:description
Shortname
Description
dc:titleName
coeus:isResourceOf
coeus:hasResource
XPath Querycoeus:query
SQL Querycoeus:query
Username
coeus:username
Password
coeus:password
SQL Token
coeus:replace
XML Token
coeus:replace
CSV Token
coeus:replace
Column Name
coeus:column
Column Number
coeus:column
Delimiter
coeus:delimiter
Line
coeus:line
coeus:method
Access Method
coeus:extends
coeus:loadsFrom
coeus:loadsFor
coeus:loadsFrom
coeus:loadsFor
coeus:loadsFrom
coeus:loadsFor
coeus:property
Predicate
coeus:property
Predicate
coeus:property Predicate
rdfs:label
rdfs:description
coeus:enabledShortname
Description
Concept
Item
Enabled (Boolean)
dc:title
Name
coeus:isAssociatedTo
coeus:hasConcept
coeus:isConceptOf
rdfs:label
coeus:public
rdfs:versionInfo
Description
Name
Public (boolean)
Version
Seed
Entity
rdfs:description
Host
coeus:host
coeus:includes
coeus:isIncludedInModule
coeus:hasModule
coeus:isModuleOf
coeus:enabled
Enabled (Boolean)
Seed
Module
coeus:hasModule
coeus:isModuleOf
coeus:enabled
Enabled (Boolean)
rdfs:label
rdfs:versionInfo
Description
Name
Version
rdfs:descriptioncoeus:plugin
Plugin (Boolean)
‣DiseaseCard4
• Requirements analysis completed
• New UI
‣ New interaction paradigm
‣Bridging the gap between the genotype to the phenotype
‣Development
• COEUS-based
• First prototype/seed/proof-of-concept
diseasecard
‣Status
• v1.2.1 online
• Human Mutation publication waiting confirmation...
‣Development
• There is always something to update..
• Monthly release cycle
‣ Next: v1.2.2 this week
wave
‣Publications
• COEUS
‣ SWAT4LS2011
‣ Software Engineering Journal
‣ Whatever opens up...
• EU-ADR
‣ Thesis
• Define structure
‣ ASAP
• Writing begins after COEUS
• Starting around October...
writing
comments, questions, suggestions, critics, advice, feedback