25th october 2008,saturday cme,department of pathology,king edward medical university,lahore 1...

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25th October 2008,Sat urday CME,DEpartment of Pathology,King Edward Medical University,Lahor e 1 Histotechniqu es Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil, FCPS, PhD Associate Prof Pathology King Edward Medical University, Lahore

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Page 1: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore

1

HistotechniquesDr Mulazim Hussain Bukhari

MBBS, DCP, MPhil, FCPS, PhD

Associate Prof Pathology

King Edward Medical University, Lahore

Page 2: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Tissue Processing Specimen Accessioning Gross Examination Fixation Tissue Processing Sectioning Frozen Sections Staining H and E staining Cover slipping Decalcification Artifacts in Histologic Sections Problems in Tissue Processing

Page 3: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Safety in the Lab The lab should be well illuminated and well-ventilated. Rules and Regulations governing

formalin and hydrocarbonds

such as xylene and toluene.

Limits set by the Occupational Safety and Health Administration (OSHA) that should not be exceeded.

These limits should be revised and revived to reduced any mishap

Page 4: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Every chemical compound used in the laboratory should have a

materials safety data sheet on file that specifies the nature, toxicity, and safety precautions to be taken when handling the compound.

The laboratory must have a method for disposal of hazardous wastes.

Health care facilities processing tissues often contract this to a waste management company.

Tissues that are collected should be stored in formalin and may be disposed by incineration or by putting them through a "tissue grinder" attached to a large sink (similar

to a large garbage disposal unit).

Page 5: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont.

Check the sharpness of scalpel, scissors and quality of other ones like ruler, probes weighing machines

Every instrument used in the laboratory should meet electrical safety specifications and have written instructions regarding its use.

Flammable materials may only be stored in approved rooms and only in storage cabinets that are designed for this purpose.

Page 6: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Fire safety procedures are to be

posted. Safety equipment including fire

extinguishers, fire blankets, and fire alarms should be within easy

access. A shower and eyewash should be

readily available. No smoking, eating or movements in

the labs Use disposable gloves

Page 7: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Laboratory accidents must be documented and

investigated with incident reports and industrial accident reports.

Specific hazards that you should know about include: Bouin's solution is made with picric acid. This acid is

only sold in the aqueous state. When it dries out, it becomes explosive.

Page 8: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Sodium azide Many reagent kits have sodium azide as a

preservative. You are supposed to flush solutions containing

sodium azide down the drain with lots of water, or there is a tendency for the azide to form metal

azides in the plumbing. These are also explosive.

Page 9: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Drainage Benzidine, benzene, anthracene, and napthol

containing compounds are carcinogens and should not be used.

Mercury-containing solutions (Zenker's or B-5) should always be discarded into proper containers.

Mercury, if poured down a drain, will form amalgams with the metal that build up and cannot be removed.

Hazards of usually used formalin

Page 10: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Objective Tissues from the body taken for diagnosis of disease processes must

be processed in the histology laboratory to produce microscopic slides that are viewed under the microscope by pathologists.

The techniques for processing the tissues, whether biopsies, larger specimens removed at surgery, or tissues from autopsy

The persons who do the tissue processing and make the glass microscopic slides are histotechnologists

Page 11: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Specimen Accessioning Tissue specimens received in the surgical

pathology laboratory have a request form that lists the patient information and history along with a description of the site of origin.

The specimens are accessioned by giving them a number that will identify each specimen for each patient

Page 12: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,
Page 13: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Grossing Describing the specimen Placing all or parts of it into a small plastic

cassette When a malignancy is suspected

Inking a gross specimen for margins

Page 14: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,
Page 15: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Fixation

Types of fixatives (AMAPO) Aldehydes Mercurials Alcohols Picrates Oxidizing agents

Page 16: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Fixation - factors affecting fixation There are a number of factors that will affect the

fixation process: Buffering Penetration Volume Temperature Concentration Time interval Position of tissue

Page 17: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Buffering Fixation is best carried out close to neutral pH, in the range of

6-8. Hypoxia of tissues lowers the pH, so there must be buffering

capacity in the fixative to prevent excessive acidity. Acidity favors formation of formalin-heme pigment that

appears as black, polarizable deposits in tissue. Common buffers include phosphate, bicarbonate, cacodylate,

and veronal. Commercial formalin is buffered with phosphate at a pH of 7.

Page 18: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Penetration Penetration of tissues depends upon the diffusability of each individual fixative, which is a constant.

Formalin and alcohol penetrate the best, and glutaraldehyde the worst.

Mercurials and others are somewhere in between.

One way to get around this problem is sectioning the tissues thinly (2 to 3 mm).

Penetration into a thin section will occur more rapidly than for a thick section

Page 19: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Volume The volume of fixative is important. There should be a 10:1 ratio of fixative to

tissue. Obviously, we often get away with less

than this, but may not get ideal fixation. One way to partially solve the problem is

to change the fixative at intervals to avoid exhaustion of the fixative.

Agitation of the specimen in the fixative will also enhance fixation.

Page 20: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Temperature Increasing the temperature, as with all

chemical reactions, will increase the speed of fixation, as long as you don't cook the tissue.

Hot formalin will fix tissues faster, and this is often the first step on an automated tissue processor.

Page 21: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Concentration of fixative Concentration of fixative should be adjusted down to the lowest level possible, because you will expend less money for the fixative.

Formalin is best at 10%; glutaraldehyde is generally made up at

0.25% to 4%. Too high a concentration may

adversely affect the tissues and produce artefact similar to excessive heat.

Page 22: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Time interval Also very important is time interval from of

removal of tissues to fixation. The faster you can get the tissue and fix it, the

better. Artefact will be introduced by drying, so if tissue

is left out, please keep it moist with saline. The longer you wait, the more cellular

organelles will be lost and the more nuclear shrinkage and artefactual clumping will occur

Page 23: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Kaiserling formula for preservation for surgical specimens for museum

Formalin pure 5 liter Distilled water 22.5 liter Potassium acetate(CH3COOK ) 250gm Chloral hydrate 50 gm

27 liter Potassium acetate is used in mixtures applied for tissue

preservation, fixation, and mummification. Most museums today use the formaldehyde-based method recommended by Kaiserling in 1897 and containing potassium acetate.

For example, Lenin's mummy was soaked in a bath containing potassium acetate

Page 24: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,
Page 25: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Gough Sections: Whole organs may be sectioned on paper

by the methods of Gough and Wentworth. These sections provide valuable

information on whole organ structure and serve as links between mounted museum specimens and histologic sections.

Page 26: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Colour restoration Small amount of sodium hydrosulphite to preserve the colour.

If the container is properly sealed, the colour restoration is then permanent.

For photography, the procedure is to first wash and clean the specimen.

It is then soaked in an excess of 60% ethanol until the colour has been restored satisfactorily

Page 27: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Characteristics of Fixatives

Chemical Fixatives Freeze Substitution Microwave Fixation

Page 28: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Ideal Fixative

Penetrate cells or tissue rapidly Preserve cellular structure before cell

can react to produce structural artifacts Not cause autofluorescence, and act as

an antifade reagent

Page 29: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Chemical Fixation

Coagulating Fixatives Crosslinking Fixatives

Page 30: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Coagulating Fixatives

Ethanol Methanol Acetone

Page 31: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Coagulating Fixatives

Fix specimens by rapidly changing hydration state of cellular components

Proteins are either coagulated or extracted Preserve antigen recognition often

Advantages

Disadvantages• Cause significant shrinkage of specimens

• Difficult to do accurate 3D confocal images

• Can shrink cells to 50% size (height)

• Commercial preparations of formaldehyde contain methanol as a stabilizing agent

Page 32: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Crosslinking Fixatives

Glutaraldehyde Formaldehyde Ethelene glycol-bis-succinimidyl succinate

(EGS)

Page 33: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cross-linking Fixatives

Form covalent crosslinks that are determined by the active groups of each compound

Page 34: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Principles of Fixation Once tissues are removed from the body, they undergo a process of self-destruction or autolysis which is initiated soon after cell death by the

action of intracellular enzymes causing the breakdown of protein and eventual liquefaction of the cell.

Page 35: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Principles of Fixation

Autolysis is independent of any bacterial action, retarded by cold, greatly accelerated at temperatures of about 30°C

and almost inhibited by heating to 50°C

Page 36: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Autolysis is more severe in tissues which are rich in

enzymes, such as the liver, brain and kidney, and is less rapid in tissues such as elastic fibre and collagen.

Page 37: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. By light microscopy, autolysed tissue presents a

`washed-out' appearance with swelling of cytoplasm, eventually converting to a granular, homogeneous

mass which fails to take up stains.

Page 38: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

How Autolysed tissue looks like The nuclei of autolytic cells may show

some of the changes of necrosis including condensation (pyknosis), fragmentation (karyorrhexis) and lysis (karyolysis) D/D these are not accompanied by an

inflammatory or cellular response.

Page 39: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

How Autolysed tissue looks like

There may be diffusion of intracellular substances of diagnostic significance, such as glycogen which is lost from the cells in the absence of prompt and suitable fixation.

Autolysis also causes desquamation of epithelium which separates from its basement membranes.

Page 40: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Bacterial Action on dead tissue

Bacterial decomposition can also produce changes in tissues that mimic those of autolysis and is brought about by bacterial proliferation in the dead tissue.

Page 41: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Bacterial Action on dead tissue

Such bacteria may normally be present in the body during life such as the non-pathogenetic organisms present in the bowel, or may be present in diseased tissues at the time of death such as in septicaemia.

Page 42: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

The objective of fixation is to preserve cells and tissue constituents in as

close a life-like state as possible and to allow them to undergo further preparative procedures without change.

Fixation arrests autolysis and bacterial decomposition and stabilizes the cellular and tissue constituents so that they withstand the subsequent stages of tissue processing.

Aside from these requirements for the production of tissue sections, increasing interest in cell constituents and the extensive use of immunohistochemistry to augment histological diagnosis has imposed additional requirements.

Page 43: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Fixation should also provide for the

preservation of tissue substances and proteins. Fixation is, therefore, the first step and the

foundation in a sequence of events that culminates in the final examination of a tissue section.

Page 44: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Common pitfalls of fixation It is relevant to point out that fixation in itself constitutes a major

artifact. The living cell is fluid or in a semi-fluid state, Whereas fixation

produces coagulation of tissue proteins and constituents, a necessary event to prevent their loss or diffusion during tissue processing; the passage through hypertonic and hypotonic solutions during tissue processing would otherwise disrupt the cells. For example, if fresh unfixed tissues were washed for prolonged

periods in running water, severe and irreparable damage and cell lysis would result.

In contrast, if the tissues were first fixed in formalin, subsequent immersion in water is generally harmless.

Page 45: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Summary of objective Fixation: Confers chemical stability on the

tissue Hardens the tissue (helps further

handling) Halts enzyme autolysis Halts bacterial putrefaction May enhance later staining techniques Introduces a 'consistent artifact'

Page 46: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Aldehydes include formaldehyde (formalin) and

glutaraldehyde. Tissue is fixed by cross-linkages formed in the

proteins, particularly between lysine residues. This cross-linkage does not harm the structure

of proteins greatly, so that antigenicity is not lost.

Page 47: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Therefore, formaldehyde is good for

immunoperoxidase techniques. Formalin penetrates tissue well, but is relatively slow.

The standard solution is 10% neutral buffered formalin.

A buffer prevents acidity that would promote autolysis and cause precipitation of formol-heme pigment in the tissues.

Page 48: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Formaldehyde Formaldehyde, as 4% buffered

formaldehyde (10% buffered formalin), is the most widely employed universal fixative particularly for routine paraffin embedded sections.

It is a gas with a very pungent odor, soluble in water to a maximum extent of 40% by weight and is sold as such under the name of formaldehyde (40%) or formalin (a colorless liquid).

Page 49: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Formaldehyde Formaldehyde is also obtainable in a stable

solid form composed of high molecular weight polymers known as paraformaldehyde.

Page 50: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,
Page 51: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Heated paraformaldehyde generates pure gaseous formaldehyde

which, when dissolved in water, reverts mostly to the monomeric form.

Aqueous formaldehyde exists principally in the form of its monohydrate, methylene glycol, CH2(OH)2, and as low molecular weight polymeric hydrates or polyoxymethylene glycols.

It has been suggested that the hydrated form, methylene glycol, is the reactive component of formaldehyde but this has been disputed.

Page 52: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Preparation of 10% Four per cent formaldehyde or 10% buffered

formalin is commonly prepared by adding 100 ml of 40% formaldehyde to 900 ml distilled water with 4 g sodium phosphatase, monobasic and 6.5 g sodium phosphate, dibasic (anhydrous).

Page 53: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Formaldehyde solutions 10% neutral buffer formalin (4% formaldehyde)

REAGENTS REQUIRED1 40% formaldehyde 100 ml2 Distilled water 900 ml3 Sodium dihydrogen orthophosphate 4 g4 Disodium hydrogen orthophosphate (anhydrous) 6.5 g (sodium hydrosulphite)

METHODPrepare, using quantities indicated. Fixation time: 24-72 hours

Page 54: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Buffered formaldehyde-glutaraldehyde 200 mOsm38

REAGENTS REQUIRED1 -Sodium dihydrogen orthophosphate 1.6 g2-Sodium hydroxide 0.27 g3-Distilled water 88 ml4-40% formaldehyde 10 ml5-50% glutaraldehyde 2 mlMETHODPrepare, using quantities indicated. Fixation time: 16-24 hours.

Page 55: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Formol saline REAGENTS REQUIRED

1- 40% formaldehyde 100 ml2 -Sodium chloride 9 g3 -Tap water 900 ml

METHODPrepare, using quantities indicated

Page 56: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Some other forms of Fixatives Baker's formol-calcium (modified)

REAGENTS REQUIRED1 40% formaldehyde 100 ml2 Distilled water 900 ml3 10% calcium chloride 100 ml4 7 g of cadmium chloride is sometimes added to the mixture

METHODPrepare, using quantities indicated. Fixation time: 16-24 hours.

Formol salineREAGENTS REQUIRED1 40% formaldehyde 100 ml2 Sodium chloride 9 g3 Tap water 900 ml

METHODPrepare, using quantities indicated.

Alcoholic formaldehydeREAGENTS REQUIRED1 40% formaldehyde 100 ml2 95% alcohol 900 ml3 0.5 g calcium acetate may be added to this mixture to ensure neutrality

METHODPrepare, using quantities indicated. Fixation time: 16-24 hours.

Page 57: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Fixatives - general usage

Formalin is used for all routine surgical pathology and autopsy tissues when an H and E slide is to be produced.

Formalin is the most forgiving of all fixatives when conditions are not ideal, and there is no tissue that it will harm significantly.

Page 58: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Zenker's fixatives Zenker's fixatives are recommended for

reticuloendothelial tissues including lymph nodes, spleen, thymus, and bone marrow.

Zenker's fixes nuclei very well and gives good detail.

However, the mercury deposits must be removed (dezenkerized) before staining or black deposits will result in the sections

Page 59: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Bouin's solution Bouin's solution is sometimes

recommended for fixation of testis, GI tract, and endocrine tissue.

It does not do a bad job on hematopoietic tissues either, and doesn't require dezenkerizing before staining

Page 60: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Glutaraldehyde Glutaraldehyde is recommended for

fixation of tissues for electron microscopy.

The glutaraldehyde must be cold and buffered and not more than 3 months old.

The tissue must be as fresh as possible

Preferably sectioned within the glutaraldehyde at a thickness no more than 1 mm to enhance fixation

Page 61: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Alcohols Alcohols, specifically ethanol, are used primarily

for cytologic smears. Ethanol (95%) is fast and cheap. Since smears are only a cell or so thick, there is

no great problem from shrinkage, and since smears are not sectioned, there is no problem from induced brittleness.

Note: For fixing frozen sections, you can use just about anything--though methanol and ethanol are the best

Page 62: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Glutaraldehyde

Glutaraldehyde causes deformation of alpha-helix structure in proteins so is not good for immunoperoxidase staining.

However, it fixes very quickly so is good for electron microscopy.

It penetrates very poorly, but gives best overall cytoplasmic and nuclear detail.

The standard solution is a 2% buffered glutaraldehyde

Page 63: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Glutaraldehyde First used in 1962 by Sabatini et al* Shown to preserve properties of

subcellular structures by EM Renders tissue autofluorescent so less

useful for fluorescence microscopy, but fluorescence can be attenuated by NaBH4.

Forms a Schiff’s base with amino groups on proteins and polymerizes via Schiff’s base catalyzed reactions

Page 64: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Forms extensive crosslinks - reacts with the -amino group of lysine, -amino group of amino acids - reacts with tyrosine, tryptophan, histidine, phenylalanine and cysteine

Fixes proteins rapidly, but has slow penetration rate Can cause cells to form membrane blebs

Page 65: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Glutaraldehyde

Supplied commercially as either 25% or 8% solution Must be careful of the impurities - can change

fixation properties - best product from Polysciences (Worthington, PA)

As solution ages, it polymerizes and turns yellow. Store at -20 °C and thaw for daily use. Discard.

Page 66: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Summary of Formaldehyde

Crosslinks proteins by forming methelene bridges between reactive groups

The ratelimiting step is the de-protonation of amino groups, thus the pH dependence of the crosslinking

Functional groups that are reactive are amido, guanidino, thiol, phenol, imidazole and indolyl groups

Can crosslink nucleic acids

Page 67: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Therefore the preferred fixative for in situ

hybridization Does not crosslink lipids but can produce

extensive vesiculation of the plasma membrane which can be averted by addition of CaCl2

Not good preservative for microtubules at physiologic pH

Page 68: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Protein crosslinking is slower than for glutaraldehyde, but formaldehyde penetrates 10 times faster.

It is possible to mix the two and there may be some advantage for preservation of the 3D nature of some structures.

Page 69: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Mercurials fix tissue by an unknown mechanism. They contain mercuric chloride and include such

well-known fixatives as B-5 and Zenker's. These fixatives penetrate relatively poorly and

cause some tissue hardness, but are fast and give excellent nuclear detail.

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Their best application is for fixation of hematopoietic and reticuloendothelial tissues.

Since they contain mercury, they must be disposed of carefully

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Alcohols including methyl alcohol (methanol) and ethyl alcohol (ethanol), are protein denaturants and are not used routinely for tissues because they cause too much brittleness and hardness.

However, they are very good for cytologic smears because they act quickly and give good nuclear detail.

Spray cans of alcohol fixatives are marketed to physicians doing PAP smears, but cheap hairsprays do just as well

Page 72: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Oxidizing agents include permanganate fixatives

Potassium permanganate, dichromate fixatives

Potassium dichromate, Osmium tetroxide.

They cross-link proteins, but cause extensive denaturation.

Some of them have specialized applications, but are used very infrequently.

Page 73: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Bouin’s Solution (Picrates) include fixatives with picric acid. Foremost among these is Bouin's

solution. It has an unknown mechanism of

action. It does almost as well as mercurials

with nuclear detail but does not cause as much hardness.

Picric acid is an explosion hazard in dry form.

As a solution, it stains everything it touches yellow, including skin.

Page 74: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

On the left with H&E staining black mercuric chloride precipitate is seen in this lymphoma fixed in B-5 and not properly dezenkerized. This precipitate is seen on the right under polarized light microscopy.

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Removal of Pig Formalin pigment 1. Dewax the sections, rinse in 100% alcohol, rinse

in 70% alcohol, rinse in distilled water. 2. Treat in saturated alcoholic picric acid for 30

minutes to 2 hours. 3. Wash well in running tap water. 4. If yellow staining of the section persists rinse in

dilute lithium carbonate. 5. Rinse in tap water. 6. Continue with method.

Page 78: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Mercury pigment 1. Dewax the sections, rinse in 100%

alcohol, rinse in 70% alcohol, rinse in distilled water.

2. Treat in Lugol's iodine for 2 minutes. 3. Decolourise in 5% sodium thiosulphate for

5 minutes. 4. Wash well in running tap water. 5. Continue with method.

Page 79: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Dichromate pigment 1. Dewax the sections, rinse in 100%

alcohol, rinse in 70% alcohol, rinse in distilled water.

2. Treat in 2% HCl in 70% alcohol 16-24 hours.

3. Rinse in tap water. 4. Continue with method.

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Tissue Processing Once the tissue has been fixed, it must be processed into a form in which it can be made into thin microscopic sections.

The usual way this is done is with paraffin.

Tissues embedded in paraffin, which is similar in density to tissue, can be sectioned at anywhere from 3 to 10 microns, usually 6-8 routinely.

The technique of getting fixed tissue into paraffin is called tissue processing Dehydration Clearing

Page 82: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Dehydration Wet fixed tissues (in aqueous solutions) cannot

be directly infiltrated with paraffin. First, the water from the tissues must be

removed by dehydration. This is usually done with a series of alcohols,

say 70% to 95% to 100%. Sometimes the first step is a mixture of

formalin and alcohol. Other dehydrants can be used, but have major

disadvantages. Acetone is very fast, but a fire

hazard, so is safe only for small, hand-processed sets of tissues.

Dioxane can be used without clearing, but has toxic fumes

Page 83: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Clearing Removal of the dehydrant with a

substance that will be miscible with the embedding medium (paraffin).

The commonest clearing agent is xylene.

Toluene works well, and is more tolerant of small amounts of water left in the tissues, but is 3 times more expensive than xylene.

Chloroform used to be used, but is a health hazard, and is slow.

Methyl salicylate is rarely used because it is expensive, but it smells nice (it is oil of wintergreen).

Page 84: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Embedding Finally, the tissue is infiltrated with the

embedding agent, almost always paraffin. Paraffins can be purchased that differ in

melting point, for various hardnesses, depending upon the way the histotechnologist likes them and upon the climate (warm vs. cold).

Wax hardness (viscosity) depends upon the molecular weight of the components and the ambient temperature.

High molecular weight mixtures melt at higher temperatures than waxes comprised of lower molecular weight fractions.

Paraffin wax is traditionally marketed by its melting points which range from 39°C to 68°C.

Page 85: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Other agents A product called paraplast contains added

plasticizers that make the paraffin blocks easier for some technicians to cut.

A vacuum can be applied inside the tissue processor to assist penetration of the embedding agent.

methyl methacrylate, glycol methacrylate, araldite, and epon. Methyl methacrylate

Page 86: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

General Embedding Procedure METHOD

1 Open the tissue cassette, check against worksheet entry to ensure the correct number of tissue pieces are present.

2 Select the mould, there should be sufficient room for the tissue with allowance for at least a 2 mm surrounding margin of wax.

3 Fill the mould with paraffin wax.

4 Using warm forceps select the tissue, taking care that it does not cool in the air; at the same time.

Page 87: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

5 Chill the mould on the cold plate, orienting the tissue and firming it into the wax with warmed forceps. This ensures that the correct orientation is maintained and the tissue surface to be sectioned is kept flat.

6 Insert the identifying label or place the labelled embedding ring or cassette base onto the mould.

7 Cool the block on the cold plate, or carefully submerge it under water when a thin skin has formed over the wax surface.

8 Remove the block from the mould.

9 Cross check block, label and worksheet

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Sectioning tissues Turn on the water bath and check that the

temp is 35-37ºC.   Use fresh deionized water (DEPC treated

water must be used if in situ hybridization will be performed on the sections). 

Blocks to be sectioned are placed face down on an ice block or heat sink for 10 minutes.

Place a fresh blade on the microtome. Insert the block into the microtome chuck so

the wax block faces the blade and is aligned in the vertical plane. Set the dial to cut 4-10 µM sections. 

The blade should angled 4-6º.  

Page 91: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Face the block by cutting it down to the desired tissue plane and discard the paraffin ribbon.

If the block is ribboning well then cut another four sections and pick them up with forceps or a fine paint brush and float them on the surface of the 37ºC water bath.

Float the sections onto the surface of clean glass slides.

If the block is not ribboning well then place it back on the ice block to cool off firm up the wax. 

If the specimens fragment when placed on the water bath then it may be too hot.

Place the slides with paraffin sections in a 65°C oven for 20 minutes (so the wax just starts to melt) to bond the tissue to the glass.

Slides can be stored overnight at room temperature

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H and E staining Hematoxylin is the oxidized product

of the logwood tree known as hematein.

Since this tree is very rare nowadays, most hematein is of the synthetic variety.

In order to use it as a stain it must be "ripened" or oxidized.

This can be done naturally by putting the hematein solution on the shelf and waiting several months, or by buying commercially ripened hematoxylin or by putting ripening agents in the hematein solution.

Page 96: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Hematoxylin will not directly stain

tissues, but needs a "mordant" or link to the tissues. This is provided by a metal cat ion such as iron, aluminum, or tungsten.

The variety of hematoxylins available for use is based partially on choice of metal ion used.

They vary in intensity or hue. Hematoxylin, being a basic dye, has an affinity for the nucleic acids of the cell nucleus.

Page 97: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Cont. Hematoxylin stains are either "regressive" or

"progressive". With a regressive stain, the slides are left in the

solution for a set period of time and then taken back through a solution such as acid-alcohol that removes part of the stain.

This method works best for large batches of slides to be stained and is more predictable on a day to day basis.

With a progressive stain the slide is dipped in the hematoxylin until the desired intensity of staining is achieved, such as with a frozen section.

This is simple for a single slide, but lends itself poorly to batch processing.

Page 98: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Eosin Eosin is an acidic dye with an affinity

for cytoplasmic components of the cell. There are a variety of eosins that can

be synthesized for use, varying in their hue, but they all work about the same.

Eosin is much more forgiving than hematoxylin and is less of a problem in the lab.

About the only problem you will see is overstaining, especially with decalcified tissues

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Decalcification Some tissues contain calcium deposits which

are extremely firm and which will not section properly with paraffin embedding owing to the difference in densities between calcium and parffin.

Bone specimens are the most likely type here, but other tissues may contain calcified areas as well.

This calcium must be removed prior to embedding to allow sectioning.

A variety of agents or techniques have been used to decalcify tissue and none of them work perfectly. Mineral acids, organic acids, EDTA, and electrolysis have all been used.

Page 101: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Strong mineral acids nitric and hydrochloric acids

rapid damage cellular morphology, so are not recommended for delicate

tissues such as bone marrow.

Page 102: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Organic acids acetic and formic acid are better suited to bone

marrow, since they are not as harsh. However, they act more slowly on dense

cortical bone. Formic acid in a 10% concentration is

the best all-around decalcifier. Some commercial solutions are available

that combine formic acid with formalin to fix and decalcify tissues at the same time.

Page 103: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

EDTA and Electrolysis EDTA can remove calcium and is

not harsh (it is not an acid) but it penetrates tissue poorly and works slowly and is expensive in large amounts.

Electrolysis has been tried in experimental situations where calcium had to be removed with the least tissue damage. It is slow and not suited for routine

daily use.

Page 104: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Procedure: Specimens should be decalcified in hydrochloric

acid/formic acid working solution 20 times their volume.

Change to fresh solution each day until decalcification is complete. It may take 24 hours up to days or months

depending on size of the specimens. See below for the testing procedures Once the decalcification is complete, rinse

specimens in water briefly and transfer to ammonia solution to neutralize acids left in specimens for 30 minutes.

Wash specimens in running tap water thoroughly up to 24 hours.

Routine paraffin embedding.

Page 105: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

End-Point of Decalcification      X-ray (the most accurate way)      Chemical testing (accurate)      Physical testing (less accurate and

potentially damage of specimen)

Page 106: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Chemical Test:       5% Ammonium Hydroxide Stock:

     Ammonium hydroxide, 28% -------------------- 5 ml

     Distilled water ---------------------------------- 95 ml

     Mix well  5% Ammonium Oxalate Stock:      Ammonium oxalate ---------------------------- 5

ml      Distilled water --------------------------------- 95

ml      Mix well  Ammonium Hydroxide/Ammonium Oxalate

Working Solution:      Use equal parts of the 5% ammonium

hydroxide solution and the 5% ammonium oxalate solution. 

Page 107: 25th October 2008,Saturday CME,DEpartment of Pathology,King Edward Medical University,Lahore 1 Histotechniques Dr Mulazim Hussain Bukhari MBBS, DCP, MPhil,

Procedure:  Insert a pipette into the decalcifying

solution containing the specimen. Withdraw approximately 5 ml of the

hydrochloric acid/formic acid decalcification solution from under the specimen and place it in a test tube.

Add approximately 10 ml of the ammonium hydroxice/ammonium oxalate working solution, mix well and let stand overnight.

Decalcification is complete when no precipitate is observed on two consecutive days of testing. Repeat this test every two or three days. 

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Physical Tests:

The physical tests include bending the specimen or inserting a pin, razor, or scalpel directly into the tissue.

The disadvantage of inserting a pin, razor, or scalpel is the introduction of tears and pinhole artifacts.

Slightly bending the specimen is safer and less disruptive but will not conclusively determine if all calcium salts have been removed.

After checking for rigidity, wash thoroughly prior to processing.