7q11.23 microduplication: a recognizable phenotype · 2012-12-31 · preschool and primary scale of...
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Clin Genet 2013: 83: 155–161Printed in Singapore. All rights reserved
© 2012 John Wiley & Sons A/S.Published by Blackwell Publishing Ltd
CLINICAL GENETICSdoi: 10.1111/j.1399-0004.2012.01862.x
Short Report
7q11.23 Microduplication: a recognizablephenotype
Dixit A, McKee S, Mansour S, Mehta SG, Tanteles GA, Anastasiadou V,Patsalis PC, Martin K, McCullough S, Suri M, Sarkar A. 7q11.23Microduplication: a recognizable phenotype.Clin Genet 2013: 83: 155–161. © John Wiley & Sons A/S. Published byBlackwell Publishing Ltd, 2012
Williams-Beuren syndrome is a well-known microdeletion syndrome witha recognizable clinical phenotype. The subtle phenotype of the reciprocalmicroduplication of the Williams-Beuren critical region has been describedrecently. We report seven further patients, and a transmitting parent, with7q11.23 microduplication. All our patients had speech delay, autisticfeatures and facial dysmorphism consistent with the published literature.We conclude that the presence of specific dysmorphic features, includingstraight, neat eyebrows, thin lips and a short philtrum, in our patients withspeech delay and autistic features provides further evidence that thechildren with 7q11.23 microduplication have a recognizable phenotype.
Conflict of interest
Nothing to declare.
A Dixita, S McKeeb,S Mansourc, SG Mehtad,GA Tantelese, V Anastasiadoue,PC Patsalise, K Martinf,S McCulloughg, M Suria
and A Sarkara
aDepartment of Clinical Genetics,Nottingham City Hospital, Nottingham,UK, bNorthern Ireland Regional GeneticsService, Belfast City Hospital, Belfast,UK, cSW Thames Regional GeneticsService, St George’s, University ofLondon, London, UK, dEast AnglianMedical Genetics Service,Addenbrooke’s Hospital, Cambridge, UK,eThe Cyprus Institute of Neurology andGenetics, Nicosia, Cyprus, fDepartmentof Cytogenetics, Nottingham CityHospital, Nottingham, UK, andgDepartment of Cytogenetics, BelfastCity Hospital, Belfast, UK
Key words: autism spectrum disorder –7q11.23 microduplication – speechdelay – Williams-Beuren critical region
Corresponding author: Dr Ajoy Sarkar,Department of Clinical Genetics, TheGables, Nottingham City Hospital,Hucknall Road, Nottingham NG51PB, UK.Tel.: +44 (0) 115 962 7728;fax: +44 (0) 115 962 8042;e-mail: [email protected]
Received 27 October 2011; revised andaccepted for publication 21 February2012
The Williams-Beuren syndrome (WBS) (MIM 194050)is caused by a de novo 1.55 Mb microdeletion at7q11.23 and affects 1/7500 to 1/20,000 live births (1,2). Like other chromosomal microdeletions, the WBSmicrodeletion occurs due to non-allelic homologousrecombination (NAHR) between low copy repeats(LCRs) flanking the deleted region. Therefore, the exis-tence of the reciprocal microduplication syndrome isnot unexpected. The first microduplication of 7q11.23
was reported in 2005 (3) and a total of 29 cases havebeen reported to date (4–13). Speech delay and autis-tic features were identified in early publications anda recent paper (5) described the facial features in 14patients and reviewed previous publications to concludethat patients with 7q11.23 microduplication have a rec-ognizable facial phenotype.
We report seven patients and one transmitting parentwith 7q11.23 microduplication.
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Dixit et al.
Methods
Patients were identified during routine clinical inves-tigations in five different centres. Patients 4 and 5were identified through multiplex ligation-dependentprobe amplification (MLPA) (kits P245A1 and P064B2;MRC, Amsterdam, The Netherlands), and the remainingprobands through 0.56 Mb bacterial artificial chromo-some (BAC), and the 60k and 105k oligonucleotidearrays (all from BlueGnome Ltd., Cambridge, UK), 44koligonucleotide array (Agilent Technologies Inc., SantaClara, CA) or the GeneChip 6.0 single-nucleotide poly-morphism (SNP) genotyping array (Affymetrix Inc.,Santa Clara, CA). In patients 1, 2 and 7, additionalindependent fluorescence in situ hybridization (FISH)confirmation of the duplication was obtained using theVysis Williams syndrome probe. The same probe wasused for the diagnosis of patient 8 and her mother.In all cases, the hybridization signals obtained wereconsistent with duplications. MLPA was used for con-firmation in patient 3 (custom MLPA of South-EastThames molecular genetics laboratory) and patient 6(P064-MR1; MRC). The duplications in patients 4 and5 were originally identified using a general kit P245A1(MRC) and subsequently confirmed with the more spe-cific kit P064B2 (MRC). Patient 4 also had independentFISH confirmation of the duplication using the VysisWilliams syndrome probe.
Reynell Developmental Language Scales (patient 1)and Clinical Evaluation of Language Fundamentals-3, UK (patient 3) were used for formal speech andlanguage assessment. Patients 2 and 3 were assessedfor autism using the Autism Diagnostic Interview-Revised (ADI-R) and Autism Diagnostic ObservationScale (ADOS). Patients 2 and 6 were assessed for atten-tion deficit hyperactivity disorder based on the ConnersParent Rating Scale. Patient 2 had detailed neuropsy-chological and language evaluation using WechslerPreschool and Primary Scale of Intelligence (WPPSI-IIIUK) and the Preschool Language Scale-3 (PLS-3 UK).
Clinical reports
The clinical features of our patients and comparisonwith the 29 individuals in published reports are depictedin Tables 1 and 2.
Speech delay and at least some autistic featureswere present in all our probands. Patient 1 commu-nicated mainly by grunting and pointing until 4 yearsof age. At the age of 6 years, he spoke only in veryshort phrases that were intelligible only to his parents.The oldest patient in our series (patient 6) is 16 yearsold, and health professionals have never witnessed anyform of vocalization. On last examination at 16 years,he used only minimal non-verbal gestures to reply todirect questioning. He is, however, reported to ver-bally converse with his parents, siblings and some closefriends. On formal speech and language assessment at35 months, patient 2 had two to three word phrases butthese were not intelligible. Neuropsychological evalu-ation at 4 years and 10 months showed his non-verbal
cognitive performance to be at the 93rd centile on theWPPSI-III UK. On the PLS-3 UK, he had a low aver-age score for understanding of language (86-expectedrange 85–115). The expressive communication sectionof PLS-3 UK could not be scored as speech errors madeit difficult to interpret his responses. He used gesturing,in preference to language or pictures, to support hisspeech intelligibility. As he had difficulty in coordinat-ing sounds and planning oral movements, it was sug-gested that he had developmental verbal dyspraxia. Theuse of non-verbal gestures to support the intelligibilityof speech has also been observed in three of the sevencases reported by Berg et al. (6) and is reminiscent ofdevelopmental verbal dyspraxia (MIM 602081) (14).
Most patients had some motor delay as well, butformal cognitive testing in patients 2 and 3 revealednon-verbal cognitive performances to be in the normalrange.
The dysmorphic features shared by most patientsincluded broad forehead, high, broad nose, straight eye-brows, short philtrum and thin upper lip (Table 2).Patient 6 had some unusual growth and phenotypic fea-tures. His head circumference was 52 cm (−2 to −3SD), height was 146 cm (−3 to −4 SD) and weightwas 36 kg (−3 to −4 SD). His span to height ratiowas 1. His bone age was 3 years delayed comparedto his chronological age. Apart from features listed inTable 2, he had additional dysmorphism in the form ofthickened, straight eyebrows with synophrys and hyper-telorism with down-slanting palpebral fissures and along, tubular nose (Fig. 1k,l).
Cleft lip and/or palate have been reported in threeprevious cases (6, 11). Ventricular dilatation on brainimaging has been reported by several authors (5–7, 11,13). Most cases are due to mild and non-specific dilata-tion of lateral ventricles. Other non-specific abnormali-ties have also been noted on brain magnetic resonanceimaging in several cases. Undescended testes have beenreported in four previous patients (5). Congenital car-diac defects have been reported in 6/29 cases (5, 11),but no other congenital anomalies have been reportedconsistently.
Three out of our seven probands had a birth weightabove the 91st centile including patient 7 whose birthweight was >99.6th centile. Three patients had a headcircumference above 91st centile and a further patient’shead circumference was at 75th centile. Six of 14patients in the Van der Aa et al. series (5) also hadhead circumference above 90th centile.
Patient 8 is the mother of patient 7 and was evaluatedfollowing her daughter’s diagnosis. She has a history oflearning difficulties and attended a special school. Shehas been assessed as having an IQ of 50 but has normalspeech and no history of speech or motor delay. Thereis no history of autism or behavioural difficulties, butshe is very shy. She lives with her mother and is unableto care for her daughter independently. Her height was159 cm (25th centile), weight 88.7 kg (99.6th centile),and head circumference 55.5 cm (25th–50th centile).She had inherited the duplication from her own mother;the duplication has therefore been shown to be present
156
7q11.23 Microduplication
Tabl
e1.
Gro
wth
para
met
ers
and
deve
lopm
enta
lfea
ture
sof
patie
nts
1–7
and
com
paris
onw
ithpa
tient
sre
port
edin
liter
atur
e(5
,11,
13)
Feat
ure
Pat
ient
1P
atie
nt2
Pat
ient
3P
atie
nt4
Pat
ient
5P
atie
nt6
Pat
ient
7P
rese
ntst
udy
Indi
vidu
als
inlit
erat
ure
Siz
eof
dupl
icat
ion
(Mb)
1.5
1.2
1.44
2N
Aa
NA
a2.
554
––
Inhe
ritan
ceU
ncer
tain
bD
eno
voD
eno
voD
eno
voU
ncer
tain
bD
eno
voM
ater
nal
––
Gro
wth
Age
atex
amin
atio
n(y
ear)
53 / 4
63 / 4
91 / 2
21 / 2
23 / 4
163
––
Wei
ght(
cent
ile)
50th
25th
50th
91st
50th
<0.
4th
50th
–75t
h–
–H
eigh
t(ce
ntile
)25
th50
th25
th2n
d9t
h�
0.4t
h9t
h–2
5th
––
Hea
dci
rcum
fere
nce
(cen
tile)
91st
25th
–50t
h90
th75
th9t
h–2
5th
0.4t
h91
st–9
8th
––
Birt
hw
eigh
t(ce
ntile
)2n
d9t
h91
st–9
8th
91st
–98t
h25
th9t
h–2
5th
>99
.6th
––
Neu
rod
evel
op
men
tal
feat
ures
Spe
ech
dela
yY
YY
YY
YY
7/7
29/2
9E
xpre
ssiv
eE
xpre
ssiv
eN
asal
spee
chre
cept
ive
Exp
ress
ive
and
rece
ptiv
eE
xpre
ssiv
ean
dre
cept
ive
Sev
ere
expr
essi
veE
xpre
ssiv
e–
–
Aut
istic
feat
ures
YY
YY
YY
Y7/
711
/29
Mot
orG
ross
mot
orde
lay
Gro
ssan
dfin
em
otor
dela
y–
Gro
ssm
otor
dela
yG
ross
mot
orde
lay
Mild
mot
orde
lay
Gro
ssm
otor
dela
y–
–
Beh
avio
ural
prob
lem
sN
Agg
ress
ion,
AD
HD
Anx
iety
Tric
hoph
agy
and
pica
YA
nxie
ty,A
DH
DA
ggre
ssio
n–
–E
pile
psy
NN
NN
NN
N0/
76/
29H
ypot
onia
YY
NY
YN
Y5/
715
/21
Join
tlax
ityY
YM
ildY
YY
Y7/
76/
27M
RIb
rain
Ben
ign
hydr
ocep
halu
sN
AN
AN
AN
AP
rom
inen
tV
ircho
w-R
obin
spac
es
NA
2/2
–
Con
geni
tala
nom
aly
NC
left
pala
teN
NN
Und
esce
nded
test
esN
2/7
–
Oth
er–
––
Ser
ous
OM
,GE
RD
Ser
ous
OM
––
––
AD
HD
,att
entio
nde
ficit
hype
ract
ivity
diso
rder
;GE
RD
,gas
troe
soph
agea
lrefl
uxdi
seas
e;M
RI,
mag
netic
reso
nanc
eim
agin
g;N
,no;
NA
,not
appl
icab
le;O
M,O
titis
med
ia;Y
,yes
.aD
iagn
osed
byM
LPA
.bO
nly
mot
her
test
ed,p
ater
nals
ampl
eun
avai
labl
e.
157
Dixit et al.
Table 2. Facial features of patients 1–7 and comparison with patients reported in literature (5, 11, 13)
Feature Patient 1 Patient 2 Patient 3 Patient 4 Patient 5 Patient 6 Patient 7Presentstudy
Individualsin literature
Broad forehead Y N Y Y Y Y Y 6/7 12/26High, broad nose Y N Y Y N Y Y 5/7 16/26Low-set ears N N Y Y N N Y 3/7 9/26Posteriorly rotated ears Y Y N Y N Y N 4/7 9/24Other ear abnormality Prominent
earOverfolded
helicesN Prominent
earN Prominent
earOverfolded
helices5/7 8/15
Deep-set eyes N Y Y N Y N Y 4/7 10/25Hypertelorism Y Y N Y N Y Y 5/7 6/24Straight brows Y Y Y Y Y Y Y 7/7 14/25Short philtrum Y Y Y Y Y N Y 6/7 12/25Thin upper lip Y Y Y N N Y Y 5/7 19/25
Y, yes; N, no.
in three generations in this family. The grandmother haslow-normal intelligence, normal speech and worked ina food packing factory. Other family members have notyet been evaluated.
Discussion
Expressive speech delay is the hallmark of 7q11.23microduplication with autistic features also present ina significant proportion of patients. This suggests thepresence of one or more dosage-sensitive genes in thisregion involved in speech and language development.Triplication of the WBS critical region has been iden-tified in two unrelated patient with severe expressivespeech delay (15, 16).
Subtle dysmorphic features have been reported inmost patients with 7q11.23 microduplication. Van derAa et al. (5) described the facial phenotype of 14 casesand analysed the photographs of previously publishedcases. They concluded that patients with 7q11.23microduplication have a recognizable face with straight,neatly placed eyebrows, a high, broad nose and thinupper lip as the most frequent findings. Other featuresincluded deep-set eyes, short philtrum and a prominentforehead. The facial phenotype of our patients stronglysupports these findings (Table 2) and provides furtherevidence that these patients have a recognizable facialgestalt.
Patient 1 was originally referred by his paediatricianfor molecular testing for hereditary sensory and motorneuropathy at the age of 5 years as he was hypotonicand thought to have absent lower limb tendon reflexes.A probe from the 7q11.23 region was used as a controlin the MLPA kit, and a duplication of this region wasidentified. Array comparative genomic hybridization(CGH) confirmed duplication of the WBS criticalregion. This serendipitous diagnosis mirrors that of thefirst patient described with 7q11.23 microduplicationin literature who, while being tested by real-timePCR for velocardiofacial syndrome, was found to haveduplication of markers in the WBS critical region (3).
Five of our seven probands were either diagnosedby arrayCGH or SNP array (Fig. 2). While three
patients had a 1.2–1.5 Mb duplication that is recipro-cal to the region deleted in WBS, two patients had alarger duplication. The centromeric breakpoint of theduplication of patient 7 (4 Mb) at 72,390,000 (NCBIBuild 36) matches well-characterized WBS LCRs, butthe telomeric breakpoint at 76,407,000 is approximately2.5 Mb distal to the usual WBS LCRs resulting in dupli-cation of several additional genes including MDH2,YWHAG, HSPB1, ZP3, SRCRB4D and DTX2, with thelast apparently duplicated gene being POMZP3. Theduplication of patient 6 was also larger than usual at2.55 Mb with the centromeric and telomeric break-points at 72,338,379 and 74,882,474, respectively, onNCBI Build 36. There are additional LCRs in theregions corresponding to the telomeric breakpoints ofpatients 6 and 7 [UCSC genome browser (17) seg-mental duplication track (accessed on October, 2011)]and it is likely that the larger duplications are alsoNAHR-mediated. Most patients with WBS microdu-plication in literature, including all 14 patients in themost recent series (5), have the typical 1.4–1.5 Mbduplication. Despite the larger sized duplication, patient7 did not show any additional or more severe fea-tures in comparison with the other patients in ourseries. At least one other patient with a similar atyp-ical larger duplication has been reported in the past,who did not have any additional features either (6).Patient 6 has short stature, but this may represent thevariability of the growth phenotype of the 7q11.23microduplication.
One instance of parental transmission was identified(patients 7 and 8). Patient 8 had some learning dif-ficulties but normal speech and no history of speechdelay. The microduplication has been reported to occuras a result of parental transmission in several previ-ously reported cases (5, 6). Most transmitting parentshave some neurobehavioural problems but some parentswith normal speech and cognitive abilities have alsobeen reported (6). It is not yet clear if the neurocogni-tive problems become less apparent with age in somepatients with 7q11.23 microduplication or whether theidentified adults represent the milder end of the pheno-typic spectrum.
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7q11.23 Microduplication
(a)
(e)
(m) (n) (o) (p)
(i) (j) (k) (l)
(f) (g) (h)
(b) (c) (d)
Fig. 1. Photographs of patients 1–8 showing facial phenotype: (a, b) patient 1, (c, d) patient 2, (e, f) patient 3, (g, h) patient 4, (i, j) patient 5,(k, l) patient 6, (m, n) patient 7, and (o, p) patient 8.
Interestingly, WBS and 7q11.23 microduplicationaffect the phenotype in opposite ways. While childrenwith WBS usually have a short upturned nose, longphiltrum with full lips and a relative strength in expres-sive language, children with the microduplication havea high, broad nose, short philtrum with thin lips andexpressive speech delay with deficits in social inter-action. Like other reciprocal deletion/duplication syn-dromes, phenotype of the 7q11.23 microduplicationis milder and more variable than the correspondingmicrodeletion syndrome. High prevalence of autisticfeatures is another trait that our patients share withother microduplication syndromes. The variable and
less distinctive phenotype is the most likely explanationfor under-diagnosis and explains the paucity of casesin the published literature. More cases are likely to beidentified with the increased use of arrayCGH in theinvestigation of children with developmental and neu-robehavioural problems. A recent study has identified asignificant association between autism spectrum disor-der and 7q11.23 microduplication (18).
In conclusion, our patients provide further evidencethat the clinical phenotype of 7q11.23 microduplicationis recognizable. The facial phenotype is subtle but dis-tinct and in the presence of speech delay with or without
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Dixit et al.
Fig. 2. Comparison of the sizes of duplications (identified by arrayCGH) in patients 1, 2, 3, 6 and 7 shown in light grey. Minimum sizes ofduplications in patients 4 and 5 (identified by multiplex ligation-dependent probe amplification) shown in dark grey.
autistic features, should enable the astute clinician tomake this diagnosis.
References
1. Donnai D, Karmiloff-Smith A. Williams syndrome: from genotypethrough to the cognitive phenotype. Am J Med Genet 2000: 97:164–171.
2. Stromme P, Bjornstad PG, Ramstad K. Prevalence estimation ofWilliams syndrome. J Child Neurol 2002: 17: 269–271.
3. Somerville MJ, Mervis CB, Young EJ et al. Severe expressive-languagedelay related to duplication of the Williams-Beuren locus. N EnglJ Med 2005: 353: 1694–1701.
4. Kirchhoff M, Bisgaard AM, Bryndorf T, Gerdes T. MLPA analysis fora panel of syndromes with mental retardation reveals imbalances in5.8% of patients with mental retardation and dysmorphic features,including duplications of the Sotos syndrome and Williams-Beurensyndrome regions. Eur J Med Genet 2007: 50: 33–42.
5. Van der Aa N, Rooms L, Vandeweyer G et al. Fourteen new casescontribute to the characterization of the 7q11.23 microduplicationsyndrome. Eur J Med Genet 2009: 52: 94–100.
6. Berg JS, Brunetti-Pierri N, Peters SU et al. Speech delay and autismspectrum behaviors are frequently associated with duplication of the7q11.23 Williams-Beuren syndrome region. Genet Med 2007: 9:427–441.
7. Depienne C, Heron D, Betancur C et al. Autism, language delay andmental retardation in a patient with 7q11 duplication. J Med Genet2007: 44: 452–458.
8. Kriek M, White SJ, Szuhai K et al. Copy number variation in regionsflanked (or unflanked) by duplicons among patients with developmentaldelay and/or congenital malformations; detection of reciprocal andpartial Williams-Beuren duplications. Eur J Hum Genet 2006: 14:180–189.
9. Torniero C, dalla Bernardina B, Novara F et al. Cortical dysplasia ofthe left temporal lobe might explain severe expressive-language delayin patients with duplication of the Williams-Beuren locus. Eur J HumGenet 2007: 15: 62–67.
10. Torniero C, Dalla Bernardina B, Novara F et al. Dysmorphic features,simplified gyral pattern and 7q11.23 duplication reciprocal to theWilliams-Beuren deletion. Eur J Hum Genet 2008: 16: 880–887.
11. Orellana C, Bernabeu J, Monfort S et al. Duplication of the Williams-Beuren critical region: case report and further delineation of thephenotypic spectrum. J Med Genet 2008: 45: 187–189.
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12. Thomas NS, Durkie M, Potts G et al. Parental and chromosomalorigins of microdeletion and duplication syndromes involving 7q11.23,15q11-q13 and 22q11. Eur J Hum Genet 2006: 14: 831–837.
13. Merritt JL, Lindor NM. Further clinical description of duplicationof Williams-Beuren region presenting with congenital glaucoma andbrachycephaly. Am J Med Genet A 2008: 146A: 1055–1058.
14. Lai CS, Fisher SE, Hurst JA, Vargha-Khadem F, Monaco AP. Aforkhead-domain gene is mutated in a severe speech and languagedisorder. Nature 2001: 413: 519–523.
15. Beunders G, van de Kamp JM, Veenhoven RH, van Hagen JM,Nieuwint AW, Sistermans EA. A triplication of the Williams-Beurensyndrome region in a patient with mental retardation, a severe
expressive language delay, behavioural problems and dysmorphisms.J Med Genet 2010: 47: 271–275.
16. Phatak V, Gray D, Jones E, Cubitt K, Gayatri N, Thomson J. A secondcase of triplication of the Williams-Beuren region with markedlyabnormal neurodevelopment and neuroimaging. J Med Genet 2011:48: S59.
17. Kent WJ, Sugnet CW, Furey TS et al. The human genome browser atUCSC. Genome Res 2002: 12: 996–1006.
18. Sanders SJ, Ercan-Sencicek AG, Hus V et al. Multiple recurrent denovo CNVs, including duplications of the 7q11.23 Williams syn-drome region, are strongly associated with autism. Neuron 2011: 70:863–885.
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