801 prime™ il-15 (rptr-147): preliminary clinical results ......prime™ il-15 (rptr-147):...

1
PRIME™ IL-15 (RPTR-147): Preliminary clinical results and biomarker analysis from a first-in-human Phase 1 study of IL-15 loaded peripherally-derived autologous T cell therapy in solid tumor patients Erika P. Hamilton 1 , Sarah Nikiforow 2 , Philip D. Bardwell 3 *, Christine M. McInnis 3 , Jeffrey Zhang 3 , George Blumenschein, Jr. 4 , Mihaela Cristea 5 , Keren Osman 6 , Anthony Shields 7 , Marlyane Motta 3 , Sanela Bilic 3 , Oliver Schoenborn-Kellenberger 3 , James A. Rakestraw 3 , Shawn P. Carey 3 , Elena Geretti 3 , Karsten Sauer 3 , Tim Harris 3 , Tap Maniar 3 , Becker Hewes 3 , Thomas Andresen 3 , Jonathan B. Fitzgerald 3 †, Harriet Kluger 8 1 Sarah Cannon Research Institute, 2 Dana-Farber Cancer Institute, 3 Repertoire Immune Medicines, 4 MD Anderson Cancer Center, 5 City of Hope, 6 Mount Sinai Medical Center, 7 Karmanos Cancer Institute, 8 Yale Cancer Center *presenting author †corresponding author [email protected] BACKGROUND & METHODS 801 Patient Population and Safety Profile Tumor Type Number of Patients Melanoma 6 Non-Small Cell Lung Carcinoma 4 Renal Cell Carcinoma 2 Head & Neck 2 Appendiceal Carcinoma 1 Ovarian Carcinoma 1 Synovial Carcinoma 1 Table 1: Tumor types of the 17 patients with advanced metastatic disease refractory to SOC who took part in the PRIME IL-15 study. Safety Summary No Dose Limiting Toxicities 10 SAEs o Majority of SAEs were due to disease o A single patient had three grade 2 infusion reactions Events all were resolved Patient had history of similar reactions to previous biologic therapies No cytokine release syndrome, neurotoxicity or other concerning immune-related toxicity o At highest cell dose, 2 patients had transient elevated IFNγ and IL-18 levels 5 related non-serious AEs all grade 1-2, resolved (other than Grade 2 fatigue) Dose escalation meeting for 360M/m 2 dose: Investigators & Sponsor agreed to escalate to the next dose level Figure 4 Figure 2 Figure 3 Figure 1 Flow Cytometry: Non-significant Increase of NK & CD8+ T Cells in Circulation at 360M cells/m2 A non-significant increase in the average cell number of NK & CD8 + T cells but not CD4 + T cells was observed at the highest cell dose. This is consistent with the expected mechanism of action and pharmacokinetics of IL-15. 1 2 4 8 16 32 64 1E-6 1E-5 1E-4 1E-3 Days Frequency of Vβ Clones 001-0001 001-0002 001-0003 009-0001 012-0001 003-0001 006-0002 0 30 60 90 0 5 10 15 Days Number of Vβ Clones Screening C2D15 C3D15 Pre-tx biopsy 1st post-tx biopsy 2nd post-tx biopsy 001-0001 Product Specific Clones Show Persistence in Blood and Tumor Product-specific clones Peripheral Blood Biopsies TCR Vβ chains were sequenced (Adaptive Biotech) from peripheral blood PBMC samples (n=7 patients) and matched FFPE tumor biopsies (n=1 patient). Product-specific clones were identified by focusing on clones that were not detected in the apheresis or pre-treatment blood samples (red boxes). The clones were tracked over time to estimate cellular PK. Experiments to identify the antigen-specificity of the T cell clones are ongoing. PRIME IL-15 T cell therapy (RPTR-147) has a favorable safety profile o No DLTs observed up to and including 360M cells/m 2 dose o Nanogel formulation attached to cells results in low systemic exposure to IL-15Fc o Dose-Escalation is proceeding Preliminary evidence of clinical activity o 10 of 17 late-stage tumor patients experienced stable disease o In 4 patients, stable disease lasted longer than 6 months Pharmacodynamic changes in immune system and tumor microenvironment were consistent with MOA o Increase in tumor infiltrating CD8 and CD4 T cells observed post infusion o Evidence of persisting product-specific T cell clones in blood and tumor (analysis of antigen specificity ongoing) Ongoing biomarker analysis will inform future clinical strategies to optimize PRIME IL-15 immunotherapy o Determine product reactivity towards individual antigens and assess for epitope spreading o Proprietary antigen decoding technologies will be applied to track epitope-specific CD8 and CD4 clonotypes in products, periphery and tumors o Deeper understanding of the effects of PRIME IL-15 therapy on the tumor microenvironment CONCLUSIONS RPTR-147 has been well-tolerated to date with preliminary evidence of biological activity Trial registered with clinicaltrials.gov NCT03815682 The study was approved by local institutional IRBs after acceptance of the IND by the FDA. Written informed consent was obtained from patients for publication of this poster and any accompanying images. PRIME IL-15 Antigen Primed Multi-Clonal T Cells Loaded with an IL-15Fc Nanogel Antigen Cassette 1 PRAME Survivin WT-1 NY-ESO-1 SSX2 Surface Modifier Cleavable Crosslinker IL-15Fc IL-15Fc Nanogel PRIME IL-15 (PRIME T cells with IL-15 payload) Study Design: A phase 1/2, first-in- human, multi-center study to characterize the safety, tolerability, pharmacokinetics (PK), pharmacodynamics, and preliminary antitumor activity of RPTR-147 administered i.v. as a monotherapy in patients with relapsed/refractory metastatic or locally-advanced solid tumors PRIME IL-15 Results in Low Systemic Exposure of IL-15Fc The 360M/m² dose of PRIME IL-15 contained 3X more IL-15Fc than the MTD of ALT-803 1 , but produced less than a tenth of the systemic exposure to free IL-15Fc o PRIME IL-15 is designed to function in an autologous manner, so low exposure is expected o In cohorts treated with 20, 40 and 120 M cells/m 2 IL-15Fc was not detected o IL-15Fc PK curve of PRIME IL-15 is >10X less than ALT-803 at 10µg/kg (C MAX ~150ng/mL i.v.) 1 o There was no ADA observed 1. Romee R, Cooley S, Berrien-Elliott MM, et al. First-in-human phase clinical study of the IL-15 superagonist complex ALT-803 to treat relapse after transplantation. Blood. 2018;131(23):2515-2527. Dose level is in million of cells per m 2 Arrow indicates continued on study Analysis cut off 12 October 2020 10 of 17 patients with Stable Disease 4 patients with SD lasting > 6 months 2 melanoma, 1 RCC, 1 NSCLC Swimmer Plot : Best Overall Response Majority of Evaluable Matched Biopsies Demonstrate an Increase in CD8 & CD4 T cell Tumor Infiltrates Pre-Tx biopsy 1st Post-Tx biopsy 2nd Post-Tx biopsy 0 500 1000 1500 2000 CD8 Cell density (# cells/mm 2 ) 2500 Pre-Tx biopsy 1st Post-Tx biopsy 2nd Post-Tx biopsy 0 1000 2000 3000 4000 CD4 Cell density (# cells/mm 2 ) Each line is a separate patient increased No increase increased No increase Increase in infiltrating CD8 T cells in 5/7 pre-/post-treatment matched biopsies Increase in infiltrating CD4 T cells in 4/6 pre-/post-treatment matched biopsies CD8 density 550 cells/mm2 CD4 density* 362 cells/mm2 *Only lymphocytes are counted macrophages are manually excluded Expression of Targeted TAAs in Tumor Biopsies was confirmed by RNASeq and IHC Protein Expression by PRAME IHC in Melanoma Patients Screening C1/2D15 C3D15 0 100 200 300 H-Score 001-0001-Pt1 001-0003-Pt3 006-0002-Pt10 006-0003-Pt11 006-0005-Pt14 Tumor associated antigen(TAA) expression by RNASeq of patient biopsies compares well with TCGA database across multiple tumor types (RCC, NSCLC, & HNSCC- data not shown) Example of RNASeq expression of the 5 TAAs and PRAME expression by IHC are shown below. As expected, PRAME expression is high in the majority of melanoma patients (4/5) Figure legend: FFPE tissue curls from patient biopsies were used for whole transcriptome RNASeq and the data was normalized to public databases (TCGA & GTEx) by using the Recount2 algorithm (doi.org/10.1038/nbt.3838 ). The peach open bars represent the mean TPM values for TAA antigen expression within specific tumor types. The green bars represent an average normal expression across a variety of healthy tissues. IHC=immunohistochemistry H-score = [1 × (% cells 1+) + 2 × (% cells 2+) + 3 × (% cells 3+)]; range 0-300 Metastatic Melanoma Patients PRAME NY-ESO-1 SSX2 Survivin WT1 0 5 10 15 Transcipts per million (TPM) P01-01-Baseline P01-03-Baseline P012-01-Baseline P06-02-C2D15 P06-03-C1D15 P06-05-Baseline Ocular Melanoma Melanoma TCGA Normal tissue Mean of medians PRAME IHC H-score = 60 Isotype control Product Description: The cell product was derived from rare peripheral anti-tumor T cell clones that were primed against a multi-antigen cassette containing tumor associated antigens (TAA). Autologous anti-TAA T cells were generated with a proprietary dendritic cell priming process and then loaded with an IL-15Fc nanogel to generate PRIME IL-15 product. Apheresis Immune Agonist Delivery Platform DENDRITIC Priming Technology Isolate cells Monocytes T cells D D Antigen cassettes Dendritic cell T cell priming by dendritic cells T Antigen- trained T cells T Cytokines/ Immune modulators PRIME T Cells Armed with Immuno-modulators Frozen Drug Product for Repeat Dosing T T M Dose Escalation IL-15Fc Dosing Level 2 mcg/kg 4 mcg/kg 11 mcg/kg 33 mcg/kg 93 mcg/kg MTD of ALT-803 (soluble IL-15Fc) 1 Current Safe Dose of PRIME IL-15 Cell Dose Level (cells/m2) 20 Million n=1 40 Million n= 3-6 120 Million n= 3-6 360 Million n=3-6 1 Billion n=6 0 5 10 15 20 25 100 1000 10000 100000 1000000 Time (hr) IL-15Fc Conc. (pg/mL) 10 µg/kg ALT-803 (reported) 360M/m 2 PRIME IL-15: (n=5) LLOQ 160M PRIME IL-15: 006-0003 Tumors Types Specified Melanoma NSCLC Bladder Head & Neck RCC DLBCL Sarcoma Ovarian RESULTS 0 5 10 15 20 25 30 0.0 0.5 1.0 1.5 2.0 2.5 NK cells 0 5 10 15 20 25 30 0.0 0.5 1.0 1.5 2.0 2.5 CD4 + cells Fold-change 0 5 10 15 20 25 30 0.0 0.5 1.0 1.5 2.0 2.5 CD8 + cells Days after first dose 360 (n=5) 120 (n=6) 20 (n=1) 40 (n=3) Other (110,160) Figure 5 Figure 6 Pre-treatment (C1D1 blood) Apheresis (~Day-28) TCR-Vβ freq. vs. TCR-Vβ freq. plots T-cell Drug Substance Freq. Range = 10 -6 to 10 -1 Figure 8 Figure 7 www.repertoire.com

Upload: others

Post on 29-Jan-2021

1 views

Category:

Documents


0 download

TRANSCRIPT

  • PRIME™ IL-15 (RPTR-147): Preliminary clinical results and biomarker analysis from a first-in-human Phase 1 study of IL-15 loaded peripherally-derived autologous T cell therapy in solid tumor patients

    Erika P. Hamilton1, Sarah Nikiforow2, Philip D. Bardwell3*, Christine M. McInnis3, Jeffrey Zhang3, George Blumenschein, Jr.4, Mihaela Cristea5, Keren Osman6 , Anthony Shields7, Marlyane Motta3, Sanela Bilic3, Oliver Schoenborn-Kellenberger3, James A. Rakestraw3, Shawn P. Carey3, Elena Geretti3, Karsten Sauer3, Tim Harris3, Tap Maniar3, Becker Hewes3, Thomas Andresen3, Jonathan B. Fitzgerald3†, Harriet Kluger8 1Sarah Cannon Research Institute, 2Dana-Farber Cancer Institute, 3Repertoire Immune Medicines, 4MD Anderson Cancer Center, 5City of Hope, 6Mount Sinai Medical Center, 7Karmanos Cancer Institute, 8Yale Cancer Center *presenting author †corresponding author [email protected]

    BACKGROUND & METHODS

    801

    Patient Population and Safety Profile

    Tumor Type Number of Patients

    Melanoma 6Non-Small Cell Lung Carcinoma 4Renal Cell Carcinoma 2Head & Neck 2Appendiceal Carcinoma 1Ovarian Carcinoma 1Synovial Carcinoma 1

    Table 1: Tumor types of the 17 patientswith advanced metastatic diseaserefractory to SOC who took part in thePRIME IL-15 study.

    Safety Summary

    • No Dose Limiting Toxicities • 10 SAEs o Majority of SAEs were due to diseaseo A single patient had three grade 2 infusion reactions

    • Events all were resolved • Patient had history of similar reactions to previous

    biologic therapies• No cytokine release syndrome, neurotoxicity or other

    concerning immune-related toxicity o At highest cell dose, 2 patients had transient elevated

    IFNγ and IL-18 levels• 5 related non-serious AEs all grade 1-2, resolved (other

    than Grade 2 fatigue)• Dose escalation meeting for 360M/m2 dose: Investigators &

    Sponsor agreed to escalate to the next dose level

    Figure 4

    Figure 2

    Figure 3

    Figure 1

    Flow Cytometry: Non-significant Increase of NK & CD8+ T Cells in Circulation at 360M cells/m2

    A non-significant increase in the average cell number of NK & CD8+ T cells but not CD4+ T cells was observed at the highest cell dose. This is consistent with the expected mechanism of action and pharmacokinetics of IL-15.

    1 2 4 8 16 32 641E-6

    1E-5

    1E-4

    1E-3

    Days

    Freq

    uenc

    y of

    Clo

    nes

    001-0001001-0002001-0003009-0001012-0001003-0001006-0002

    0 30 60 900

    5

    10

    15

    Days

    Num

    ber o

    f Vβ

    Clo

    nes

    Screening

    C2D15

    C3D15

    Pre-t

    x biop

    sy

    1st p

    ost-tx

    biop

    sy

    2nd p

    ost-tx

    biop

    sy

    001-0001

    Product Specific Clones Show Persistence in Blood and Tumor

    Product-specific clones

    Peripheral Blood Biopsies

    TCR Vβ chains were sequenced (Adaptive Biotech) from peripheral blood PBMC samples (n=7 patients) and matched FFPE tumor biopsies (n=1 patient). Product-specific clones were identified by focusing on clones that were not detected in the apheresis orpre-treatment blood samples (red boxes). The clones were tracked over time to estimate cellular PK. Experiments to identify theantigen-specificity of the T cell clones are ongoing.

    • PRIME IL-15 T cell therapy (RPTR-147) has a favorable safety profileo No DLTs observed up to and including 360M cells/m2 doseo Nanogel formulation attached to cells results in low systemic exposure to IL-15Fco Dose-Escalation is proceeding

    • Preliminary evidence of clinical activityo 10 of 17 late-stage tumor patients experienced stable diseaseo In 4 patients, stable disease lasted longer than 6 months

    • Pharmacodynamic changes in immune system and tumor microenvironment were consistent with MOAo Increase in tumor infiltrating CD8 and CD4 T cells observed post infusion o Evidence of persisting product-specific T cell clones in blood and tumor (analysis of antigen

    specificity ongoing)• Ongoing biomarker analysis will inform future clinical strategies to optimize PRIME IL-15 immunotherapy

    o Determine product reactivity towards individual antigens and assess for epitope spreadingo Proprietary antigen decoding technologies will be applied to track epitope-specific CD8 and

    CD4 clonotypes in products, periphery and tumorso Deeper understanding of the effects of PRIME IL-15 therapy on the tumor microenvironment

    CONCLUSIONSRPTR-147 has been well-tolerated to date with preliminary evidence of biological activity

    Trial registered with clinicaltrials.gov NCT03815682 The study was approved by local institutional IRBs after acceptance of the IND by the FDA. Written informed consent was obtained from patients for publication of this poster and any accompanying images.

    PRIME IL-15 Antigen Primed Multi-Clonal T Cells Loaded with an IL-15Fc Nanogel

    Antigen Cassette 1

    PRAME

    Survivin

    WT-1

    NY-ESO-1

    SSX2

    SurfaceModifier

    CleavableCrosslinker

    IL-15FcIL-15Fc NanogelPRIME IL-15

    (PRIME T cells with IL-15 payload)

    Study Design: A phase 1/2, first-in-human, multi-center study to characterize the safety, tolerability, pharmacokinetics (PK), pharmacodynamics, and preliminary antitumor activity of RPTR-147 administered i.v. as a monotherapy in patients with relapsed/refractory metastatic or locally-advanced solid tumors

    PRIME IL-15 Results in Low Systemic Exposure of IL-15Fc

    • The 360M/m² dose of PRIME IL-15 contained 3X more IL-15Fc than the MTD of ALT-8031, but produced less than a tenth of the systemic exposure to free IL-15Fc

    o PRIME IL-15 is designed to function in an autologous manner, so low exposure is expected

    o In cohorts treated with 20, 40 and 120 M cells/m2 IL-15Fc was not detected

    o IL-15Fc PK curve of PRIME IL-15 is >10X less than ALT-803 at 10µg/kg (CMAX ~150ng/mL i.v.)1

    o There was no ADA observed1. Romee R, Cooley S, Berrien-Elliott MM, et al. First-in-human phase

    clinical study of the IL-15 superagonist complex ALT-803 to treat relapse after transplantation. Blood. 2018;131(23):2515-2527.

    • Dose level is in million of cells per m2• Arrow indicates continued on study• Analysis cut off 12 October 2020

    • 10 of 17 patients with Stable Disease• 4 patients with SD lasting > 6 months

    • 2 melanoma, 1 RCC, 1 NSCLC

    Swimmer Plot : Best Overall Response Majority of Evaluable Matched Biopsies Demonstrate an Increase in CD8 & CD4 T cell Tumor Infiltrates

    Pre-T

    x biop

    sy

    1st P

    ost-T

    x biop

    sy

    2nd P

    ost-T

    x biop

    sy0

    500

    1000

    1500

    2000

    CD8

    Cell

    dens

    ity(#

    cel

    ls/m

    m2 )

    2500

    Pre-T

    x biop

    sy

    1st P

    ost-T

    x biop

    sy

    2nd P

    ost-T

    x biop

    sy0

    1000

    2000

    3000

    4000

    CD4

    Cell

    dens

    ity(#

    cel

    ls/m

    m2 )

    Each line is a separate patient

    increased

    No increase

    increased

    No increase

    Increase in infiltrating CD8 T cells in 5/7 pre-/post-treatment matched biopsies

    Increase in infiltrating CD4 T cells in 4/6 pre-/post-treatment matched biopsies CD8 density

    550 cells/mm2CD4 density*

    362 cells/mm2

    *Only lymphocytes are countedmacrophages are manually excluded

    Expression of Targeted TAAs in Tumor Biopsies was confirmed by RNASeq and IHC

    Protein Expression by PRAME IHC in Melanoma Patients

    Screening C1/2D15 C3D15

    0

    100

    200

    300

    H-S

    core

    001-0001-Pt1001-0003-Pt3006-0002-Pt10006-0003-Pt11006-0005-Pt14

    • Tumor associated antigen(TAA) expression by RNASeq of patient biopsies compares well with TCGA database across multiple tumor types (RCC, NSCLC, & HNSCC- data not shown)

    • Example of RNASeq expression of the 5 TAAs and PRAME expression by IHC are shown below.• As expected, PRAME expression is high in the majority of melanoma patients (4/5)

    Figure legend: FFPE tissue curls from patient biopsies were used for whole transcriptome RNASeq and the data was normalized to public databases (TCGA & GTEx) by using the Recount2 algorithm (doi.org/10.1038/nbt.3838). The peach open bars represent the mean TPM values for TAA antigen expression within specific tumor types. The green bars represent an average normal expression across a variety of healthy tissues. IHC=immunohistochemistryH-score = [1 × (% cells 1+) + 2 × (% cells 2+) + 3 × (% cells 3+)]; range 0-300

    Metastatic Melanoma Patients

    PRAME NY-ESO-1 SSX2 Survivin WT10

    5

    10

    15

    Tran

    scip

    ts p

    er m

    illio

    n (T

    PM)

    P01-01-BaselineP01-03-BaselineP012-01-BaselineP06-02-C2D15P06-03-C1D15P06-05-BaselineOcular Melanoma

    MelanomaTCGANormal tissueMean of medians

    PRAME IHCH-score = 60

    Isotype control

    Product Description: The cell product was derived from rare peripheral anti-tumor T cell clones that were primed against a multi-antigen cassette containing tumor associated antigens (TAA). Autologous anti-TAA T cells were generated with a proprietary dendritic cell priming process and then loaded with an IL-15Fc nanogel to generate PRIME IL-15 product.

    Apheresis

    Immune Agonist Delivery PlatformDENDRITIC Priming TechnologyIsolate cells

    Monocytes

    T cells

    D D

    Antigen cassettes

    Dendritic cell

    T cell priming by dendritic cells

    TAntigen-trainedT cells

    T

    Cytokines/Immune modulators

    PRIME T Cells Armed with Immuno-modulators

    Frozen Drug Product for

    Repeat Dosing

    T

    T

    M

    Dose Escalation

    IL-15Fc Dosing Level

    2 mcg/kg

    4 mcg/kg

    11 mcg/kg

    33 mcg/kg

    93 mcg/kg

    MTD of ALT-803 (soluble IL-15Fc)1

    Current Safe Dose of PRIME IL-15

    Cell Dose Level(cells/m2)

    20 Millionn=1

    40 Millionn= 3-6

    120 Millionn= 3-6

    360 Millionn=3-6

    1 Billion n=6

    0 5 10 15 20 25100

    1000

    10000

    100000

    1000000

    Time (hr)

    IL-1

    5Fc

    Conc

    . (p

    g/m

    L) 10 µg/kg ALT-803 (reported)

    360M/m2 PRIME IL-15: (n=5)

    LLOQ

    160M PRIME IL-15: 006-0003

    Tumors Types Specified

    Melanoma

    NSCLC

    Bladder

    Head & Neck

    RCC

    DLBCL

    Sarcoma

    Ovarian

    RESULTS

    0 5 10 15 20 25 300.0

    0.5

    1.0

    1.5

    2.0

    2.5

    NK cells

    0 5 10 15 20 25 300.0

    0.5

    1.0

    1.5

    2.0

    2.5

    CD4+ cells

    Fold

    -cha

    nge

    0 5 10 15 20 25 300.0

    0.5

    1.0

    1.5

    2.0

    2.5

    CD8+ cells

    Days after first dose

    360 (n=5)

    120 (n=6)20 (n=1)

    40 (n=3)Other (110,160)

    Figure 5

    Figure 6

    Pre-

    trea

    tmen

    t (C1

    D1 b

    lood

    )Ap

    here

    sis (~

    Day-

    28)

    TCR-Vβ freq. vs. TCR-Vβ freq. plots

    T-cell Drug Substance

    Freq. Range = 10-6 to 10-1

    Figure 8

    Figure 7

    www.repertoire.com

    mailto:[email protected]?subject=SITC%202020%20Poster%20Inquiryhttps://doi.org/10.1038/nbt.3838https://www.repertoire.com/

    PRIME™ IL-15 (RPTR-147): Preliminary clinical results and biomarker analysis from a first-in-human Phase 1 study �of IL-15 loaded peripherally-derived autologous T cell therapy in solid tumor patients