a names backbone - a graph of taxonomy

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A names backbone: a graph of taxonomy Nicky Nicolson, RBG Kew Informatics Horizons for the Natural History Museum 24 th July 2013

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Page 1: A names backbone - a graph of taxonomy

A names backbone: a

graph of taxonomy

Nicky Nicolson, RBG Kew

Informatics Horizons for the Natural History Museum

24th July 2013

Page 2: A names backbone - a graph of taxonomy

Project and aim

Project

• DEFRA funded

• Split into 3 phases:

• Names and taxonomy

• Collections

• Taxon based information

Aim

• To create, curate and cite semantically-meaningful

objects

• “Things “ not “strings”

Page 3: A names backbone - a graph of taxonomy

A 3-layered model

“Strings”

“Things”

“Graph of

things”

Page 4: A names backbone - a graph of taxonomy

Attempts a transcribing a name:

“strings”

Page 5: A names backbone - a graph of taxonomy

Names in the nomenclatural sense:

“things”

Page 6: A names backbone - a graph of taxonomy

Taxonomic concepts:

“a graph of things”

Page 7: A names backbone - a graph of taxonomy
Page 8: A names backbone - a graph of taxonomy
Page 9: A names backbone - a graph of taxonomy

A 3-layered model

“Strings”

“Things”

“Graph of

things”

Page 10: A names backbone - a graph of taxonomy

A 3-layered model

Name occurrences

Names

Concepts

Page 11: A names backbone - a graph of taxonomy

Relations become more

interesting than the nodes

Page 12: A names backbone - a graph of taxonomy

Multiple opinions – using the

same name nodes

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Summary

Implications:

- Changes in the way we create, curate and cite data

and how we present it to systems and users

Applications:

- Integration of data, when that data has been stored

using different classifications

- Analysis - why do differences of opinion occur?

- Synthesis - propose classifications by integrating

existing overlapping concept data

Page 14: A names backbone - a graph of taxonomy

Thanks

Nicky Nicolson

[email protected]