a novel gene (hip) activated in human primary liver cancer1 · in colon, brain, kidney, or lung. in...

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[CANCER RESEARCH 52, 5089-5095, September 15, 1992] A Novel Gene (HIP) Activated in Human Primary Liver Cancer1 Chantai Lasserre,2 Laurence Christa, Marie-Thérèse Simon, Philippe Vernier, and Christian Bréchot INSERM U75, CHU Necker, 156 rue de Vaugirard, 75742 Paris cedex 15 fC. L., L. C., M-T. S., C. B.]; Unité d'Hépatologie,HôpitalLaënnec,rue de Sevrés, 75007 Paris [C. B.]; and Laboratoire de Neurobiologie Cellulaire et Moléculaire,CNRS, Gif sur Yvette F-91190 [P. V.], France ABSTRACT Differential screening of a human hepatocellular carcinoma comple mentary DNA library using subtracted probes allowed us to identify a novel gene named HIP whose expression at the transcriptional level was elevated in liver tumors. The protein potentially encoded by the com plementary DNA showed 68.5% identity with the bovine pancreatic thread protein and 49% identity with the human reg protein, which has been proposed as a pancreatic islet cell regenerating factor and is iden tical to the pancreatic stone or pancreatic thread protein. Sequence analysis suggests that the bovine pancreatic thread protein encoding gene is, in fact, the bovine homologue of the HIP gene. Furthermore, data base searches revealed a significant similarity of the HIP and pancreatic stone protein/pancreatic thread protein/reg sequences with the C-type lectin superfamily. The HIP sequence, like pancreatic stone protein/pancreatic thread protein/reg protein, consists of a single car bohydrate recognition domain linked to a signal peptide which would be involved in secretion of the protein. HIP mRNA was expressed at a high level in the tumors of seven of 29 hepatocellular carcinomas. In contrast, HIP mRNA was not detected in nontumorous adjacent areas or in normal adult and fetal liver, sug gesting that HIP could be involved in liver cell proliferation or differ entiation. HIP mRNA expression is tissue specific, since it is present in the normal small intestine and pancreas, while it could not be evidenced in colon, brain, kidney, or lung. In summary, our results show the existence of a novel family within the superfamily of C-type lectin which may be involved in liver, pancre atic, and intestinal cell proliferation or differentiation. INTRODUCTION Although highly differentiated hepatocytes retain replicative potential. In response to partial hepatectomy, rodent liver re generation involves almost all hepatocytes, which divide either once or twice before returning to their normal quiescent state (1). Liver cells can also proliferate in response to cell necrosis due to viral infections or chemicals. Similarly, liver cirrhosis in humans is characterized by so-called regenerative nodules sep arated by areas of fibrosis; cell proliferation within these nod ules likely accounts in part for the emergence of HCC3 within the cirrhotic tissue (2). As altered gene expression is a common feature of neoplastic cells, several authors have sought the identification of genes which are abundantly or specifically expressed in tumorous tissues as compared with the corresponding normal tissues (3, 4). It is assumed that such genes might be involved in some steps in cell transformation. In addition, the steady-state level of their transcripts may also provide information on the hepa- tocyte differentiation both during carcinogenesis and in fully developed tumors. In the present report we used a subtractive hybridization technique which allows genes to be selected on the basis of their Received 5/27/92; accepted 7/3/92. The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked advertisement in accord ance with 18 U.S.C. Section 1734 solely to indicate this fact. 1 Work supported by INSERM, ARC, LNC, Fondation de France, EC. 2 To whom requests for reprints should be addressed. 3 The abbreviations used are: HCC, hepatocellular carcinoma; cDNA, comple mentary DNA; PSP, pancreatic stone protein; FTP, pancreatic thread protein; poly A+ RNA, polyadenylate-containing RNA; BPTP, bovine pancreatic thread protein; CRD, carbohydrate-recognition domain; HCA, Hydrophobie cluster analysis. differential expression in tumorous as compared with normal liver tissues. This procedure (5, 6), greatly facilitates the iden tification of tumor-specific mRNAs. A cDNA library was gen erated from RNAs extracted from a human primary liver can cer. Differential screening of this library with subtracted cDNA probes allowed us to identify a novel gene named HIP, whose mRNA level was elevated in liver tumors. HIP mRNA expres sion in normal tissues was restricted to the small intestine and pancreas and, in particular, was not detected in normal liver. The protein potentially encoded by HIP cDNA shows a signif icant similarity with the products of three genes which were recently shown (7) to be identical: PSP (8) or PTP (9) and reg (7, 10). In addition, on the basis of structural similarities, HIP protein probably belongs to the C-type lectin superfamily (11). It has been hypothesized that the PSP/PTP/reg protein might be involved in cell regeneration in the pancreas (10, 12) and brain (13) and in the prevention of pancreatic calculi for mation (14). Therefore, our report identifies a gene belonging to a novel gene family, which may be involved in liver, pancre atic, and intestinal cell differentiation and/or proliferation. MATERIALS AND METHODS Tissue Samples. The liver sample used to construct for the cDNA library was an early, well-differentiated HCC obtained at surgery from a young woman (Patient C. H.) uninfected by hepatitis B or C viruses. The HCC developed on the left liver lobe, while a histologically benign adenoma was present on the right lobe. The nontumoral liver was histologically normal. Twenty-nine primary liver cancers were also ob tained at surgery; both tumorous and nontumorous liver samples were available in 28 cases. Human pancreas, liver, and intestine were ob tained at surgery. Rat tissue samples were obtained from male Sprague- Dawley rats. All tissues were immediately frozen in liquid nitrogen and stored at -80°C until use. RNA Extraction and Northern Blots. Total RNA was extracted us ing the hot phenol method (15). Poly A+ RNA was purified by means of oligo(dT) cellulose affinity chromatography. RNAs were separated on a denaturing formaldehyde gel as previously described (16) and then transferred onto Hybond-C-extra nitrocellulose membranes (Amer- sham, United Kingdom). The probe used to hybridize the filters was the BamHl-BamHl fragment prepared from HIP cDNA. Mouse /3-actin cDNA was used as reference probe to verify the quantity of RNA applied to the filters. Hybridization and washing were carried out as previously described (16). HCC cDNA Library and Subtracted cDNA Probes: Generation and Screening. Oligo(dT)-primed, double-stranded cDNA was prepared from poly A+ RNA isolated from the primary liver cancer of Patient C. H. (17). Blunt ends were obtained by treatment with T4 polymerase. £coRIsites were methylated, and EcoRl linkers were ligated to the cDNA. After £coRI digestion the cDNA was size-fractionated in a sucrose gradient. The cDNAs exhibiting a mean size between 1 and 2 kilobases were selected and inserted into the EcoRI site of the blue-script vector (Stratagene). DH 5«competent cells (BRL) were transformed with ligation mix. The library gave rise to 5 x IO4 recombinant clones that were stored by plating on Hybond C extra nitrocellulose mem branes (Amersham, United Kingdom) and screened without amplifica tion. Oligo(dT)-primed, single-stranded cDNA probes were prepared from 3 Mgof poly A+ RNA isolated from (a) Patient C. H. (HCC), (b) Patient C. H. (adenoma), and (c) normal liver. Probes were labeled during the cDNA synthesis by adding 1.2 ¡iC\/u\of [a-32P]dCTP (400 pCi/ml; 5089 Research. on January 7, 2021. © 1992 American Association for Cancer cancerres.aacrjournals.org Downloaded from

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Page 1: A Novel Gene (HIP) Activated in Human Primary Liver Cancer1 · in colon, brain, kidney, or lung. In summary, our results show the existence of a novel family within the superfamily

[CANCER RESEARCH 52, 5089-5095, September 15, 1992]

A Novel Gene (HIP) Activated in Human Primary Liver Cancer1

Chantai Lasserre,2 Laurence Christa, Marie-ThérèseSimon, Philippe Vernier, and Christian BréchotINSERM U75, CHU Necker, 156 rue de Vaugirard, 75742 Paris cedex 15 fC. L., L. C., M-T. S., C. B.]; Unitéd'Hépatologie,Hôpital Laënnec,rue de Sevrés,75007Paris [C. B.]; and Laboratoire de Neurobiologie Cellulaire et Moléculaire,CNRS, Gif sur Yvette F-91190 [P. V.], France

ABSTRACT

Differential screening of a human hepatocellular carcinoma complementary DNA library using subtracted probes allowed us to identify anovel gene named HIP whose expression at the transcriptional level waselevated in liver tumors. The protein potentially encoded by the complementary DNA showed 68.5% identity with the bovine pancreaticthread protein and 49% identity with the human reg protein, which hasbeen proposed as a pancreatic islet cell regenerating factor and is identical to the pancreatic stone or pancreatic thread protein. Sequenceanalysis suggests that the bovine pancreatic thread protein encodinggene is, in fact, the bovine homologue of the HIP gene. Furthermore,data base searches revealed a significant similarity of the HIP andpancreatic stone protein/pancreatic thread protein/reg sequences withthe C-type lectin superfamily. The HIP sequence, like pancreatic stone

protein/pancreatic thread protein/reg protein, consists of a single carbohydrate recognition domain linked to a signal peptide which would beinvolved in secretion of the protein.

HIP mRNA was expressed at a high level in the tumors of seven of29 hepatocellular carcinomas. In contrast, HIP mRNA was not detectedin nontumorous adjacent areas or in normal adult and fetal liver, suggesting that HIP could be involved in liver cell proliferation or differentiation. HIP mRNA expression is tissue specific, since it is present inthe normal small intestine and pancreas, while it could not be evidencedin colon, brain, kidney, or lung.

In summary, our results show the existence of a novel family withinthe superfamily of C-type lectin which may be involved in liver, pancre

atic, and intestinal cell proliferation or differentiation.

INTRODUCTION

Although highly differentiated hepatocytes retain replicativepotential. In response to partial hepatectomy, rodent liver regeneration involves almost all hepatocytes, which divide eitheronce or twice before returning to their normal quiescent state(1). Liver cells can also proliferate in response to cell necrosisdue to viral infections or chemicals. Similarly, liver cirrhosis inhumans is characterized by so-called regenerative nodules separated by areas of fibrosis; cell proliferation within these nodules likely accounts in part for the emergence of HCC3 within

the cirrhotic tissue (2).As altered gene expression is a common feature of neoplastic

cells, several authors have sought the identification of geneswhich are abundantly or specifically expressed in tumoroustissues as compared with the corresponding normal tissues(3, 4). It is assumed that such genes might be involved in somesteps in cell transformation. In addition, the steady-state levelof their transcripts may also provide information on the hepa-tocyte differentiation both during carcinogenesis and in fullydeveloped tumors.

In the present report we used a subtractive hybridizationtechnique which allows genes to be selected on the basis of their

Received 5/27/92; accepted 7/3/92.The costs of publication of this article were defrayed in part by the payment of

page charges. This article must therefore be hereby marked advertisement in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

1Work supported by INSERM, ARC, LNC, Fondation de France, EC.2 To whom requests for reprints should be addressed.3 The abbreviations used are: HCC, hepatocellular carcinoma; cDNA, comple

mentary DNA; PSP, pancreatic stone protein; FTP, pancreatic thread protein; polyA+ RNA, polyadenylate-containing RNA; BPTP, bovine pancreatic thread protein;CRD, carbohydrate-recognition domain; HCA, Hydrophobie cluster analysis.

differential expression in tumorous as compared with normalliver tissues. This procedure (5, 6), greatly facilitates the identification of tumor-specific mRNAs. A cDNA library was generated from RNAs extracted from a human primary liver cancer. Differential screening of this library with subtracted cDNAprobes allowed us to identify a novel gene named HIP, whosemRNA level was elevated in liver tumors. HIP mRNA expression in normal tissues was restricted to the small intestine andpancreas and, in particular, was not detected in normal liver.The protein potentially encoded by HIP cDNA shows a significant similarity with the products of three genes which wererecently shown (7) to be identical: PSP (8) or PTP (9) and reg(7, 10). In addition, on the basis of structural similarities, HIPprotein probably belongs to the C-type lectin superfamily (11).

It has been hypothesized that the PSP/PTP/reg proteinmight be involved in cell regeneration in the pancreas (10, 12)and brain (13) and in the prevention of pancreatic calculi formation (14). Therefore, our report identifies a gene belongingto a novel gene family, which may be involved in liver, pancreatic, and intestinal cell differentiation and/or proliferation.

MATERIALS AND METHODS

Tissue Samples. The liver sample used to construct for the cDNAlibrary was an early, well-differentiated HCC obtained at surgery froma young woman (Patient C. H.) uninfected by hepatitis B or C viruses.The HCC developed on the left liver lobe, while a histologically benignadenoma was present on the right lobe. The nontumoral liver washistologically normal. Twenty-nine primary liver cancers were also obtained at surgery; both tumorous and nontumorous liver samples wereavailable in 28 cases. Human pancreas, liver, and intestine were obtained at surgery. Rat tissue samples were obtained from male Sprague-Dawley rats. All tissues were immediately frozen in liquid nitrogen andstored at -80°C until use.

RNA Extraction and Northern Blots. Total RNA was extracted using the hot phenol method (15). Poly A+ RNA was purified by means

of oligo(dT) cellulose affinity chromatography. RNAs were separatedon a denaturing formaldehyde gel as previously described (16) and thentransferred onto Hybond-C-extra nitrocellulose membranes (Amer-sham, United Kingdom). The probe used to hybridize the filters was theBamHl-BamHl fragment prepared from HIP cDNA. Mouse /3-actincDNA was used as reference probe to verify the quantity of RNAapplied to the filters. Hybridization and washing were carried out aspreviously described (16).

HCC cDNA Library and Subtracted cDNA Probes: Generation andScreening. Oligo(dT)-primed, double-stranded cDNA was preparedfrom poly A+ RNA isolated from the primary liver cancer of Patient C.

H. (17). Blunt ends were obtained by treatment with T4 polymerase.£coRIsites were methylated, and EcoRl linkers were ligated to thecDNA. After £coRIdigestion the cDNA was size-fractionated in asucrose gradient. The cDNAs exhibiting a mean size between 1 and 2kilobases were selected and inserted into the EcoRI site of the blue-script

vector (Stratagene). DH 5«competent cells (BRL) were transformedwith ligation mix. The library gave rise to 5 x IO4 recombinant clones

that were stored by plating on Hybond C extra nitrocellulose membranes (Amersham, United Kingdom) and screened without amplification.

Oligo(dT)-primed, single-stranded cDNA probes were prepared from3 Mgof poly A+ RNA isolated from (a) Patient C. H. (HCC), (b) Patient

C. H. (adenoma), and (c) normal liver. Probes were labeled during thecDNA synthesis by adding 1.2 ¡iC\/u\of [a-32P]dCTP (400 pCi/ml;

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

Amersham) with cold dCTP (80 MMfinal concentration). Subtraction ofthe cDNA population was performed by liquid hybridization with 60 ¿tgof normal liver poly A* RNA at 68°Cfor 40 h. Subtracted single-

stranded cDNA was separated from cDNA-RNA hybrid molecules using hydroxylapatite (Biorad) chromatography. Subtracted single-stranded DNA was used to hybridize the cDNA library. Recombinantclones were ordered on nitrocellulose filters in order to facilitate theanalyses of differential hybridization patterns obtained with the subtracted cDNA probes. Filters were triplicated, and each was hybridizedwith 10s cpm/ml of subtracted cDNA probes for 14 h. Filters werewashed for 30 min at 65°Cin 0.1% sodium dodecyl sulfate:0.3x stan

dard saline citrate buffer and subjected to autoradiography for 10 daysat -80°Cwith intensifying screens.

Ileum cDNA Library. Oligo(dT)-primed, double-stranded cDNAwas prepared from poly A+ of human ileum, and a XZAP cDNA library

was generated using the XZAP cDNA synthesis kit (Stratagene).Nucleotide Sequence Analysis. HIP cDNA was digested with

BamHl restriction enzyme, and the inserts obtained were subcloned inthe bluescript vector (Stratagene). Double-stranded DNA was se-

quenced using the dideoxy chain termination method. Data basesearches and sequence analyses were performed with the GCG package(18) and hydrophobic cluster analysis (19, 20) with the MANSERprogram on a VAX computer (Digital).

Primer Extension Experiments. Primer extension assays were performed using 20 Mgof ileum total RNA, 5' end-labeled [7-'2P]ATP, and

murine leukemia virus reverse transcriptase (BRL). The primer was asynthetic 21-mer oligonucleotide corresponding to nucleotides —¿�1+20

of the cDNA. The size of extended primer was measured by comparisonwith a sequencing ladder.

RESULTS

Differential Screening of the HCC cDNA Library. A cDNAlibrary was generated from the tumorous tissues of a patientwith a well-differentiated HCC (Patient C. H.). Among the50,000 recombinant clones obtained, 2,500 were analyzed ontriplicate filters by differential screening. Three single-stranded

cDNA probes were synthesized from (a) the HCC tumor liversample used for the cDNA library, (b) the adenoma from thesame patient, and (c) liver samples from several normal controlindividuals and then subtracted with liver poly A+ RNA from

several normal subjects. Among the 2,500 clones tested with thethree probes, 330 showed a differential pattern of hybridization,i.e., the cDNA probe derived from the HCC tissue yielded amarkedly more intense signal than the probes obtained from theadenoma and normal liver. These 330 clones were again submitted to the differential screening procedure in order to enhance the selectivity of the analysis.

As for the first screening, hybridization was performed withthe cDNA probes derived from liver RNA samples of Patient C.H. However, subtraction was achieved with total RNA from ahistologically normal liver sample adjacent to the tumor andthus obtained from the same liver. This procedure shouldindeed avoid selection of genes activated by the surgical resection itself. In the second round of hybridization, 10 recombinant clones strongly hybridizing with the subtracted cDNAprobe derived from the HCC were picked up. These cDNAclones were then used as probes in a Northern blot analysis ofRNAs extracted from the HCC, adenoma, and normal livertissues of Patient C. H. Intense expression of the correspondingmRNAs was detected in the HCC and adenoma, while no signalwas detectable in the nontumorous tissues and normal liver(Fig. 1). One of these 10 clones was selected for further analysis,on the basis of intensity of hybridization.

Nucleotide and Amino Acid Sequence of the HIP Gene. ThiscDNA, which identified a 0.9-kilobase mRNA molecule, was

KB

0.9

Fig. 1. RNA blot analysis of liver RNA from Patient C. H. and from normalliver. The probe was the BamH\-BamH[ fragment purified from HIP cDNA.Lanes I lo 4 (exposure times are in parentheses). Patient C. H. I une /, HCC, 40/ig of total RNA (20 h); Lane 2, nontumorous area of HCC, 40 Mgof total RNA(7 days); Lane 3, adenoma, 40 eg of total RNA (20 h); Lane 4 nontumorous areaof adenoma, 40 eg of total RNA (7 days); Lanes 5 and 6, normal liver from twodifferent subjects, 40 ua of total RNA (7 days).

further analyzed and forms the basis of this report. Its nudootide sequence was determined. As shown in Fig. 2, the cDNAhad one open-reading frame encoding a 175-amino acid protein, assuming that the ATG at nucleotide +1 is the start codon(21) and the TGA at nucleotide 526 is the stop codon. The 3'

untranslated region included the last 222 nucleotides and exhibited the canonical polyadenylation signal (AATAAA) in position 735. The poly(A) tail was included in the cDNA. Aprimer extension assay indicated that cap sites were located 40and 60 nucleotides upstream of the first ATG (data not shown).

The nucleotide and deduced amino acid sequences werescreened for potential similarities. We found a 49% amino acidhomology with the products of three human genes which wererecently shown (7) to be identical, the PSP (8), PTP (9), and thereg protein (10) encoding genes, as well as with their rat counterparts [PSP and reg rat proteins] ( 10, 22) (Fig. 3). However,the protein potentially encoded by the HIP cDNA sequenceexhibited a better (68.5%) similarity with a BPTP (23). Furthermore, the BPTP sequence is closer to that of HIP than tothat of the PSP/PTP/reg gene (68.5% versus 44%) at the aminoacid level. In addition, the number of amino acids in HIP andBPTP is identical (n = 175); in contrast it is different from thatof PSP/PTP/reg human and rat proteins (166 and 165 aminoacids, respectively). It is therefore very likely that the HIP protein comprises the human homologues bovine BTP, HIP, andBPTP, being more distantly related to the PSP/PTP/reg humanand rat proteins (Fig. 3).

The jV-terminus of the HIP protein sequence is highly hydro-phobic and reminiscent of the signal peptide cleaved in themature PSP/PTP/reg and bovine PTP proteins. It is not yetclear whether the NH2 end of the mature protein is theglutamine in position 23 (which is conserved in HIP/BPTP andPSP/reg) or that in position 25 (which is changed to glutamicacid in HIP/BPTP) (8). The potential trypsin cleavage site at

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

position 33-34 of PSP/PTP/reg protein is also conserved inHIP/BPTP. Lastly, a potential JV-glycosylation site is situatedat position 136 of the HIP sequence but is not conserved in theBTP or PSP/PTP/reg sequences.

-iagtcgcaqacact

ATG CTG CCT CCC ATO GCC CTG CGC ACT GTA TCT TGG ATGMet Leu Pro Pro Met Ala Leu Pro Ser Val Ser Trp Met

CTG CTT TCC TGC CTC ATG CTG CTG TCT CAG GTT CAÕGGTLeu Leu Ser Cys Leu Met Leu Leu Ser Gin Val Gin Gly

GAA GAA CCC CAG AGG GAA CTG CCC TCT GCA CGG ATC CGCGlu Glu Pro Gin Arg Glu Leu Pro Ser Ala Arg Ile Arg

TGT CCC AAA GGC TCC AAG GCC TAT GGC TCC CAC TGC TATCys Pro Lys Gly Ser Lys Ala Tyr Gly Ser His Cys Tyr

GCC TTG TTT TTG TCA CCA AAA TCC TGG ACA GAT GCA GATAla Leu Phe Leu Ser Pro Lys Ser Trp Thr Asp Ala Asp

CTG GCC TGC CAG AAG CGG CCC TCT GGA AAC CTG GTG TCTLeu Ala Cys Gin Lys Arg Pro Ser Gly Asn Leu Val Ser

GTG CTC AGT GGG GCT GAG GGA TCC TTC GTG TCC TCC CTGVal Leu Ser Gly Ala Glu Gly Ser Phe Val Ser Ser Leu

GTG AAG AGC ATT GGT AAC AGC TAC TCA TAC GTC TGG ATTVal Lys Ser Ile Gly Asn Ser Tyr Ser Tyr Val Trp Ile

GGG CTC CAT GAC CCC ACA CAG GGC ACC GAG CCC AAT GGAGly Leu His Asp Pro Thr Gin Gly Thr Glu Pro Asn Gly

GAA GGT TGG GAG TGG AGT AGC AGT GAT GTG ATG AAT TACGlu Gly Trp Glu Trp Ser Ser Ser Asp Val Met Asn Tyr

TTT GCA TGG GAG AGA AAT CCC TCC ACC ATC TCA AGC CCCPhe Ala Trp Glu Arg Asn Pro Ser Thr Ile Ser Ser Pro

GGC CAC TGT GCG AGC CTG TCG AGA AGC ACA GCA TTT CTGGly His Cys Ala Ser Leu Ser Arg Ser Thr Ala Phe Leu

AGG TGG AAA GAT TAT AAC TGT AAT GTG AGG TTA CCC TATArg Trp Lys Asp Tyr Asn Cys Asn Val Arg Leu Pro Tyr

GTC TGC AAG TTC ACT GAC tagtgcaggagggaagtcagcagcctgVal Cys Lys Phe Thr Asp *

tgtttggtgtgcaactcatcatgggcatgagaccagtgtgaggactcaccct 604

ggaagagaatattcgcttaattcccccaacctgaccacctcattcttatctt 656

tcttctgtttcttcctccccgctgtcatttcagtctcttcattttgtcatac 708

ggcctaaggctttaaagagcaataaaatttttagtctgcpolyA 747

Fig. 2. Sequence of human HIP mRNA and deduced sequence of encodedpreprotein. Noncoding sequences are in lowercase letters, and the polyadenylationsite aataaa is underlined. The stop codon is marked by an asterisk.

3913

7826

11739

15652

19565

23478

27391

312104

351117

390130

429143

468156

507169

552175

HIP and PSP/PTP/reg Proteins Belong to the C-Type Lectin

Superfamily. Data base searches revealed another interestingfeature, namely, the significant similarity of the HIP and PSP/PTP/reg sequences with the calcium-dependent, C-type, animal

lectin superfamily. Although this similarity has already beennoticed (24), a systematic structural analysis and its potentialfunctional consequences remained to be done. The C-type lectin

family comprises either multifunctional membrane proteinslike the hepatic asialoglycoprotein receptor or small solubleproteins with no second type of binding site such as mannose-binding proteins and invertebrate lectins. C-type animal lectinsare structurally characterized by a conserved CRD comprising120 to 130 amino acid residues including four invariable cys-

teines which form two intrachain disulfide bridges (11). Theresolution of the three-dimensional structure of CRD inthe crystallized rat mannose binding Protein A at 2.5 A (25)allowed an accurate comparison of the HIP/PSP/PTP/regsequences with the structural regions of C-lectin CRD to bemade. As a first step we used a two-dimensional analysis of the

sequences to facilitate the alignment of CRD in representativemembers of the C-lectin superfamily with the HIP and regsequences. The HCA, an example of which is presented inFig. 4, gave rise to a sequence segmentation which fits, withvery few exceptions, with the three-dimensional structure of theCRD of the mannose-binding Protein A. The two a helices andthe five /3-strands were easily identified in the CRD of the 14sequences of C-lectins we analyzed. It was more difficult todelineate the four loops, and their lengths vary significantlyamong different CRDs. However, the residues, probably involved in the coordination of the two calcium ions required forcarbohydrate binding, are highly conserved in loops LI, L3, andL4 and in strand 04 (Fig. 5). In this respect, HIP/reg sequencesexhibited variations of consensus amino acids belonging to thecalcium binding site 2 in Loop 4. Acidic amino acids arechanged for serine-threonine/serine and glycine-histidine/

tyrosine, respectively, at the beginning and the end of Loop 4,in the sequence of HIP and PSP/PTP/reg proteins.

Four conserved cysteines can form disulfide bridges betweenal and (35 on one hand and between /33 and /34 on the otherhand. An identical situation has been shown to occur for PSP/PTP/reg protein (26, 27) and bovine-PTP (28) and could

HshipBtptp

HaregHsptpRnptp

Consensus H"S"

X Q T 3 3 YA Q T N 3T R . N K

Consensus Q- - 120

Consensus - Q - 0 Q- - Q 0-13-0 D - Q - - B LM;1J 176

Fig. 3. Comparison of amino acid sequences of HIP (Hship), bovine PTP (Btptp) (23). human reg (Hsreg) (10), human pre-PSP (Hsptp) (8), and rat PTP (Rnptp)(10, 22). Six conserved cysteine residues are marked by arrows. The stop codons are marked by asterisks.

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

RNMBPA

HSHIP

HSREG

a.2 ß2L1L2 L3L4ß3 B4 ß5^MM ^^m —¿� —¿�— —¿� —¿�^^ i^HI ___

Fig. 4. HCA plots of the potential CRD of several C-leetins. HCA plot alignments were performed with the Mansek program (18). RNMBPA, rat mannose-binding Protein A (38); HSHIP, human HIP; HSREG, human reg (7); MRLEC2,barnacle lectin Bra-2 (30); RNLECI, rat hepatic lectin 1 (39); MMLHR, mouselymphocyte homing receptor (40); HSPGCC, human cartilage proteoglycan (41).Vertical bars delineate consensus stretches determined by HCA plots. Domainsdefined by the crystallographic analysis of RNMBPA are indicated by horizontalbars upon the sequence (thick bars, a helices; medium bars, ßstrands; thin bars,loops). *, prolines; *, glycines; D, threonines; El, serines. The numbering wasgiven according to the method of Weiss et al. (25).

therefore be predicted for HIP protein too. Two extra cysteines,found at the end terminus of HIP and PSP/PTP/reg proteins(Fig. 3), are surrounded by a sequence stretch conserved in thesea urchin lectin (29) as well as in the acorn barnacle lectinsBra-2 and Bra-3 (30, 31) where they generate, as for PSP/PTP/reg, another intrachain disulfide bridge.

In summary, the HIP sequence, like PSP/PTP/reg protein, ismade of a single CRD of C-type lectin, linked to a signal pep-tide required for the soluble lectin to be secreted.

Northern Blot Analysis of HIP mRNA. We then analyzedthe expression of the 0.9-kilobase HIP mRNA in various normal rat and human tissues. In rats, HIP mRNA was not detected in regenerating rat liver (data not shown), brain, muscle,colon, or adult and fetal liver (Fig. 6A). In contrast, the HIPmRNA was clearly detected in the duodenum, jejunum, andileum (Fig. 6A). In humans, HIP mRNA was found in the smallintestine and pancreas (Fig. 6.-I) but not in the colon, brain,

kidney, or lung (Fig. 6A). We also examined HIP mRNA in apanel of human HCCs and in two cases of human pancreaticcell hyperplasia (hyperinsulinism). The 0.9-kilobase transcriptwas clearly detected in 7 of 29 HCCs examined, while it was notshown in nontumorous areas or in fetal and adult normal liver(Fig. 6Ä).It was also identified in the two cases of hyperinsulinism tested (Fig. 6B). As this gene was expressed in normal smallintestine and pancreas as well as in HCC, it was designated"HIP" (hepatocellular carcinoma, small intestine, pancreas).

Finally, to confirm that the nucleotide sequence of the HIPcDNAs, obtained from tumor liver, was identical to the normalgene sequence, we synthesized a cDNA library from humanileum poly A+ RNA and screened it with the HIP probe. This

allowed us to clone another HIP cDNA and to show that thecoding sequence in the HIP cDNA obtained from the normaland tumorous tissues was identical (data not shown). Southernblot analysis showed a single band with EcoRl digestion andtwo bands with Hindlll digestion. There was no evidence of agross rearrangement in the tumor (C. H.) used for the cDNAlibrary (data not shown).

DISCUSSION

We report the identification of a novel gene isolated from ahuman HCC cDNA library by means of differential screening.The gene was named HIP since its expression is markedly increased in human primary liver cancer while it is normallyfound in the small intestine and pancreas. Sequence comparison showed that the HIP-encoded protein presents significanthomology with the human and rat reg proteins, the human andrat PSPs, and the human and bovine thread proteins (PTP andBPTP); the human PTP, PSP, and reg proteins are in factidentical products of a single copy gene (7). PTP/reg and PSPonly differ by three amino acids located in the NH2 extremity ofthe protein. Other minimal nucleotide sequences are observedbetween PSP/PTP and reg in the 5' untranslated region of the

mRNA (8) and in the first intron of the gene (7). PTP/reg andPSP sequences thus probably correspond to allelic variants ofthe same gene.

A bovine gene, homologous to PSP/PTP/reg, has recentlybeen isolated from a normal pancreatic cDNA library (23).Interestingly, amino acid sequence comparison showed that theHIP protein is more similar to the bovine PTP (68.5% homology) than to the human and rat PTP/PSP/reg sequences (49%and 42%, respectively). The bovine PTP (BPTP) sequence isalso closer to HIP (68.5%) than to human PTP/PSP/reg protein (45%). HIP- and BPTP-translated proteins also have thesame length (175 amino acids), but are 9 and 10 amino acidslonger than the human and rat PSP/PTP/reg proteins, respectively. It is therefore very likely that the BPTP protein is thebovine homologue of the HIP protein and is more distantlyrelated to the PSP/PTP/reg human proteins. HIP and BPTP,on the one hand, and the human and rat PSP/PTP/reg, on theother hand, therefore define a new protein family which shareswith the C-type lectins all the structural characteristics of theirCRD (11). The recent elucidation of the three dimensionalstructure of the CRD of the crystallized mannose binding Protein A at high resolution greatly facilitates sequence comparisons between the C-type lectins (25). Owing to on intermediatestep of two-dimensional cluster analysis, it is possible to assignwithout ambiguity the various stretches of HIP and the otherrelated sequences to the structural domain delimited by thecrystallographic approach. The most conserved domains correspond either to the hydrophobic core of the protein or the

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

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Fig. 5. Comparison of sequences of the potential CRD. Hship. HIP; Hsreg, PSP/PTP/reg (7); Aclec, sea urchin lectin (39); Mrlec2, acorn barnacle lectin Bra 2 (30);Splec, flesh fly lectin (35); Pmlec, tunciate lectin (34); Hspgcf, human fibroblast proteoglycan core protein (42); Hspgcc, human cartilage proteoglycan core protein (41);Rnlecl, rat hepatic lectin (39); Hslec2, human asialoglycoprotein receptor (43); Rnmbpa, rat mannose-binding Protein A (38); Hsmbp, human mannose-binding protein(32); Mmlhr. mouse lymphocyte homing receptor (40); Hselam, human leukocyte adhesion molecule (44); *. stop codon; ».sites where sequence alignments wereinterrupted; black boxes, proposed calcium-binding residues in the mannose-binding protein: [/) or (2), potential consensus for calcium binding in the C-lectin family.Precise residue is nevertheless difficult to assign in some proteins. Sequence stretches corresponding to defined domains of Rnmbpa are boxed, a helices and .¡strandsnumbering is that proposed by Weiss el al. (25).

crucial residues which bind the calcium ions characterizing thislectin family. In this respect, it is interesting to note the aminoacid divergence in the second calcium binding site of HIP andPSP/PTP/reg proteins relative to most of the other CRDs. Asimilar variation is, however, found in some of the eight CDRrepeats of the mannose receptor and at the first calcium bindingsite in Loop 1 for several selectins (32). It might have someconsequences on the affinity, the specificity, or the pH dependence of the carbohydrate binding.

On the basis of sequence identities, functional properties, andmultidomain arrangements of the proteins and the exon-intronorganization of the genes, Drickamer et al. proposed a classification of the C-lectins into four families, i.e., I, proteoglycans;II, endocytosis receptors for serum glycoprotein (type II receptors); III, CRDs connected to collageneous domains; and IV,cell adhesion molecules with a lectin domain (33). HIP andPSP/PTP/reg proteins have structural characteristics whichmake them difficult to classify in the four C-lectin familiesdefined above. Contrary to the other C-lectin families, HIP- andreg-related proteins are built of a single CRD linked to a signalpeptide, likely to be cleaved in the mature protein when secretedinto the extracellular environment. In that respect, they areclose to invertebrate lectins like sea-urchin lectin (29), acorn

barnacle lectins Bra-2 and Bra-3 (30,31), tunicate lectin (34), orthe flesh-fly lectin (35) (although this latter has an extra domain). In addition, the divergence between the HIP/PSP/PTP/reg and each of the four C-type lectin subclasses is similar tothat between the four subclones of lectins. Moreover, althoughthe structure of the HIP gene is not yet known, the humanPSP/PTP/reg CRD is encoded by four exons instead of eitherone or three for the other CRD of C-lectins, and has a verydifferent position of exon-intron junctions (7). It is thereforeplausible that HIP/PSP/PTP/reg proteins belong to a fifth classof C-lectins, more closely related to the invertebrate lectins thanto the other types of animal C-lectins. Although the role of HIPis unknown, the sequence homology provides working hypotheses which have now to be tested.

With regard to its expression, the HIP cDNA was obtainedby differential screening of a cDNA library generated from ahuman HCC. It was expressed at high levels in the tumor tissueof 7 of 29 human HCCs. In contrast, HIP mRNA was notdetected in normal fetal or adult liver nor in regenerating ratliver; these observations raise the issue of its role in liver celldifferentiation and proliferation. In this respect, it is interestingto note that the reg protein has been proposed to be a pancreaticislet cell regenerating factor; it was initially identified in the rat

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

123456 7 •¿� » 10 11 11 IJ 14

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BFig. 6. A, RNA from various normal tissues. The probe was the BamHl-

BamHl fragment purified from HIP cDNA. Lanes I to 6, human tissues; Lane I,colon, 40 ng of total RNA (2 days); Lane 2, ileum, 40 jig of total RNA (2 days);Lane 3, brain, 2.5 Mgof polyA* RNA (4 days); Lane 4, kidney, 40 jig of total RNA

(4 days); Lane 5, lung, 40 ng of total RNA (4 days); Lane 6, pancreas, 40 ng oftotal RNA (1 day). Lanes 7 to 14, rat tissues; Lane 7, duodenum. 40 jig of totalRNA (7 days); Lane 8, colon. 40 ng of RNA (7 days); Lane 9, ileum, 40 ng of totalRNA (7 days); Lane 10, jejunum. 40 Mgof total RNA (7 days); Lane 11, brain, 40»igof total RNA (7 days); Lane 12. fetal liver, 40 jig of RNA (7 days); Lane 13,adult liver, 40 <*gof total RNA (7 days); Lane 14, muscle, 40 wg of total RNA (7days). B, Lanes I and 2, Patient K.; Lane 1, HCC tumorous area, 40 ng of totalRNA (2 days); Lane 2, nontumorous area of HCC. 40 ng of total RNA (2 days);Lanes 3 and 4, Patient A.; Lane 3, HCC tumorous area, 40 »igof total RNA (5days); Lane 4, nontumorous area of HCC, total RNA (5 days); Lane 5, normaladult liver, 40 *igof total RNA (5 days); Lane 6, normal fetal adult liver. 40 uv,oftotal RNA (5 days); Lane 7, hyperinsulinic pancreas, 40 ng of total RNA (2 days).(Exposure times are in parentheses.)

by differential screening of a cDNA library derived from a regenerating pancreatic islets-derived cDNA library (10). The human reg gene was then isolated and found to be expressed inpancreatic cells and, to a lesser extent, in the kidney and thegastric mucosa (7). In rats, expression of the reg protein occursin normal acinar pancreatic cells, whereas its location in /3-cellsecretory granules is only observed in regenerating islets (12).Reg expression has also been shown to increase in some humancolon and rectal cancers (10). On the other hand, expression ofthe PSP or FTP protein is decreased in human chronic calcifying pancreatitis and is an inhibitor of CaCO3 crystal growthin vitro, suggesting that it could normally control CaCO3 crys-tallorea in pancreatic juice (8, 14). Finally, this pancreatic protein has also been shown to accumulate in the developing human brain and Alzheimer's disease (13).

With regard to the tissue specificity of HIP gene expression,HIP RNA expression in adults was only detected in the smallintestine and pancreas. We will investigate in detail which celltypes express the gene. In this view it should be remembered

that the liver, pancreas, and small intestine have a commonembryonic origin. In addition, the so-called "oval" liver cells,

presumably of ductal origin, proliferate in rodents in responseto various chemical carcinogens and are candidates for generating HCC (1). They can differentiate into both pancreatic cellsand hepatocytes (1) and, in certain conditions, give rise to intestinal metaplasia (36). Conversely, rat pancreatic ductularcells can differentiate into hepatocytes following a copper depletion-repletion regimen (37). Given the expression pattern ofHIP, as well as the potential role of lectins in differentiationand development (34), it will be interesting to explore its possible expression in candidate liver progenitor cells. In conclusion, we have identified a new gene whose sequence homologywith the PSP/PTP/reg gene shows the existence of a novelfamily of genes with different tissue specificities, possibly involved in liver, pancreatic, and intestinal differentiation and/orcell proliferation.

ACKNOWLEDGMENTS

We thank A. Lamouroux, M. Darmon, and J. Mallet for their interest and contribution to this work, D. Houssin and D. Franco for theliver samples, J-P. Bonnefont and A. Lemoine for pancreatic samples,and I. de Waziers for intestinal samples. We also thank J. Weimann forproviding some rat RNAs.

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A NOVEL GENE (HIP) AND HUMAN PRIMARY LIVER CANCER

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1992;52:5089-5095. Cancer Res   Chantal Lasserre, Laurence Christa, Marie-Thérèse Simon, et al.   A Novel Gene (HIP) Activated in Human Primary Liver Cancer

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