advanced bioinformatics
DESCRIPTION
Advanced Bioinformatics. BIF-30806. Welcome. Content of the course. Basic Linux Perl scripting Open Bioinformatics Software Protein Motifs Protein Interactions Semantic web. NGS RNA-seq/splicing Comparative genomics Chip-Seq Project. Teachers. Jack Leunissen Harm Nijveen - PowerPoint PPT PresentationTRANSCRIPT
Advanced Bioinformatics
BIF-30806
Welcome
Content of the course
Basic Linux Perl scriptingOpen Bioinformatics
Software
Protein MotifsProtein InteractionsSemantic web
NGSRNA-seq/splicingComparative genomicsChip-Seq
Project
Teachers
Jack LeunissenHarm NijveenAalt-Jan van DijkEdouard SeveringElio SchijlenFelipe Leal ValentimJoachim Bargsten
Jose MuinoKe LinPierre-Yves ChibonPjotr PrinsSandra SmitSaulo Alves AflitosTom de Man
Grading
Exercises(8) + Perl exam 30%Project Report 50%Project Presentation 20%
(inter)active participation during lectures and practical sessions is highly appreciated
Hours
Mornings:9 - 12
Afternoon:13 - 17:15
Coffee/tea breaks as required
Location
Lectures: PC 771
Practical sessions and project work:PC 771, G 790, G 794, G 795
Project
Create an analysis pipeline using Perl to answer a biological question
2 weeks
Small teams of ~4 students
One report and presention per student
Perl
Introduction to the language
Focus on practical use
Exercises numbered 1 - 8 should to be mailed before Feb 23 to: [email protected]
Written exam after one week
Perl Gurus
Already a Perl Guru?
Then you can skip the Perl classes
But:You should hand in the exercise solutions and do the written exam (easy)
Overestimation of Perl skills is at your own risk...