all in the family - university of utah · • informing ohp about results . proband reports /...
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All in the Family
How Genetic Counselors Facilitate Familial Genetic Testing
Genetic Counselor, ARUP Laboratories
Amanda Openshaw, MS, LCGC
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Objectives
• Recognize different methodologies for performing
family specific genetic testing
• Explain why positive control samples and a proband’s
original test report are important for accurate testing
• Identify how genetic counselors can serve as a
resource during the familial testing process
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Why This Topic is Important
• Potential for false reassurance of a normal result
– If we didn’t know what we were looking for or how to look for it,
the family member may still be at risk.
• Original proband’s report, or providing a positive control
is important but can take effort
– Best to be prepared prior to testing family members
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Why do Familial Testing?
• Medical management and recurrence risks
• Some OHPs opt for the SAME test as the proband
– Targeted, site-specific testing is often cheaper and faster than
the more comprehensive version that the proband had
– Especially when dealing with NGS panels, or genomic
microarray, it’s a better use of healthcare dollars to go
searching only in the region with a genetic change
• Assumes you know how the proband was tested…
• Assumes you know exactly where to look…
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Types of Proband Test Results
• Single gene testing
– Gene(s) sequencing (Sanger or NGS panel)
– Single gene del/dup testing
• Genomic testing
– FISH
– Microarray
– Chromosome analysis
– (Exome sequencing)
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Familial Genetic Tests
• Recommended test to order on family members
depends on several factors
– How the proband was tested and what the results were
– Clinical question for the family member – carrier status?
Affected status? Recurrence risk?
• Methodology used for proband’s testing may not be
appropriate for a family member
• There may be more than one option for familial testing
each with pros and cons
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Test Selection (sometimes)
PROBAND
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
FAMILY MEMBER
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
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Testing Selection (more common)
PROBAND
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
FAMILY MEMBER
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
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Brief Overview of Test Methods – Sequencing
Targeted mutation/exon
Modified from slide by Yuan Ji, PhD
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Sequencing
Full-gene
Modified from slide by Yuan Ji
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MLPA
http://www.mrc-holland.com
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FISH
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Image courtesy of Affymetrix.
Genomic Microarray
www.affymetrix.com
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Images courtesy of Affymetrix.
www.affymetrix.com
Genomic Microarray
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Chromosome Analysis
htt
p:/
/ww
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pect
ral-
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om
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So many options – now what?
PROBAND
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
FAMILY MEMBER
Sequencing
del/dup (MLPA)
FISH
Array
Chromosomes
• Ask a genetic counselor to help select and
coordinate testing!
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Genetic Counselor’s Role
• Test selection
– Implication of results
• Test coordination
– Obtaining reports, paperwork, and making sure lab is informed
– Checking that family member and control samples are ordered
correctly
• Interpretive comments
• Informing OHP about results
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Proband Reports / Positive Controls
• Proband report and positive control are both important
• Controls ensure the test ordered would have identified the familial
variant if present
– Lab methodologies can be slightly different
– Nomenclature for mutations can be different
– Some familial testing might be possible without a control
• Control options:
– Proband’s previous sample
– New blood or buccal sample from proband
– Maternal blood for fetal tests
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Summary - Suggestions
• Involve genetics / genetic counselors
• Be prepared to obtain a report
• Investigate sooner rather than later
– May avoid a proband redraw
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Objectives
• Distinguish different methodologies for performing
family specific genetic testing
• Explain why positive control samples and a proband’s
original test report are important for accurate testing
• Understand how genetic counselors can serve as a
resource during the familial testing process
![Page 21: All in the Family - University of Utah · • Informing OHP about results . Proband Reports / Positive Controls • Proband report and positive control are both important • Controls](https://reader035.vdocument.in/reader035/viewer/2022071022/5fd6c7c4c114933b6f3fff6c/html5/thumbnails/21.jpg)
Acknowledgements
• Erin Baldwin, MS, CGC
• Sara Brown, MS, CGC
• Shelly Bosworth, MS, CGC
• Yuan Ji, PhD, DABCP, FACMG
• Fellow ARUP GCs, Medical Directors
• ARUP Genetics Division Labs and non-genetics personnel participating in this testing