2020-11-12 egon willighagen open access world access publishing... · 2021. 1. 12. · egon...
Post on 16-Feb-2021
2 Views
Preview:
TRANSCRIPT
-
Open science in an open access world
Egon Willighagen2020-11-12
@egonwillighagen0000-0001-7542-0286
School of Nutrition and Translational Research in Metabolism
-
Every year in autumn, Open Access receives a lot of attention, and invariably it is conflated with Open
Science. While they both an overlap in intentions, they are quite distinct. This talk will focus on how we can
enable Open Science with Open Access, using scholarly journals as the vehicle. Currently, too many articles
share tiny bits of knowledge that could have been more efficiently shared via a database. The journal article
has, in many cases, effectively become an advertisement: to understand the full experiment, they article is
not always enough. It is not open science. Worse, with the modern fetish around impact factors, we only
recognize and reward the advertisement, which does great damage to open science. For more than 20 years,
Open Science has been about efficient and openly sharing of research output. It does so by allowing other to
reuse, modify, and redistribute that research. Journals used to enable this behavior. How can a journal further
enable Open Science? First and foremost, a scientific journal must recognize and reward all research output.
Research output is not only articles, but also data, software and standards. Journals can recognize and reward
these by adoption of standards for data, software, etc citation. Sustainable and FAIR supplementary
information is essential. Adoption of Open Citations and the Citation Typing Ontology will give more insight in
reuse of output and will support the second urgent need: general improvement of dissemination of
knowledge, for example with semantic web technologies, global unique identifiers, machine readability, etc.
The adoption of Open Science by Open Access journals is slow but steady: a key advantage of Open Science is
that it doesn't go away; it just accumulates. Problems remain, but this talk will give you a good idea of Open
Access can embrace Open Science.
-
Disclaimer: Editor-in-Chief J. Cheminform.
School of Nutrition and Translational Research in Metabolism
-
Acknowledgements
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
Open Access is not the same as Open Science
-
Open, Publish, and FAIR
School of Nutrition and Translational Research in Metabolism
Open Publish
FAIR
Modify
Distribute
Use
-
Open, Publish, and FAIR
School of Nutrition and Translational Research in Metabolism
Open Publish
FAIR
Modify
Distribute
Use
-
Can Open Access support Open Science?
-
RecognitionandRewarding
School of Nutrition and Translational Research in Metabolism
-
RecognitionandRewarding
School of Nutrition and Translational Research in Metabolism
-
Research and Research Output
• Articles• Data (data sets,
databases, …)• Software• Standards
(specifications, policies, …)
• Protocolos• ...
School of Nutrition and Translational Research in Metabolism
-
Research and Research Output
• Articles• Data (data sets,
databases, …)• Software• Standards
(specifications, policies, …)
• Protocolos• ...
School of Nutrition and Translational Research in Metabolism
• Journals, Books• Repositories, “web"
• GitHub/Zenodo• Zenodo•
• ? • ...
-
Should all RO be published as an article?
School of Nutrition and Translational Research in Metabolism
-
Should all RO be published as an article?
School of Nutrition and Translational Research in Metabolism
-
Should all RO be published as an article?
School of Nutrition and Translational Research in Metabolism
-
Improving knowledge dissemination
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
Hanspers, K., Riutta, A., Summer-Kutmon, M. et al. Pathway information extracted from 25 years of pathway figures. Genome Biol 21, 273 (2020). https://doi.org/10.1186/s13059-020-02181-2
-
How FAIR is an article?
https://twitter.com/petermurrayrust/status/1326660269481799680
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
Availability section (inherited from BMC)
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
Additional files on Figshare (more FAIR)
-
School of Nutrition and Translational Research in Metabolism
-
ORCID integration
School of Nutrition and Translational Research in Metabolism
-
Scholia, ORCID, Wikidata
School of Nutrition and Translational Research in Metabolism
-
Scholia, ORCID, Wikidata
School of Nutrition and Translational Research in Metabolism
-
Scholia, ORCID, Wikidata
School of Nutrition and Translational Research in Metabolism
-
Scholia, ORCID, Wikidata
School of Nutrition and Translational Research in Metabolism
-
Scholia, ORCID, Wikidata
School of Nutrition and Translational Research in Metabolism
-
GitHub
School of Nutrition and Translational Research in Metabolism
-
Open Citations & I4OC
School of Nutrition and Translational Research in Metabolism
-
Citation distribution
School of Nutrition and Translational Research in Metabolism
-
Citation Typing Ontology
School of Nutrition and Translational Research in Metabolism
-
Citation Typing Ontology (CiTO) Pilot
School of Nutrition and Translational Research in Metabolism
-
School of Nutrition and Translational Research in Metabolism
-
CiTO harvested by Wikidata
School of Nutrition and Translational Research in Metabolism
-
Uptake (pilot + other)
School of Nutrition and Translational Research in Metabolism
-
What is says about a journal?
School of Nutrition and Translational Research in Metabolism
-
What is next?
School of Nutrition and Translational Research in Metabolism
-
Use Open Access to promote Open Science
• GitHub (etc)• Zenodo/Figshare• code/data review
• built a community
-
Easy: Manuscript checklists
https://casp-uk.net/School of Nutrition and Translational Research in Metabolism
-
Figshare: more cheminformatics formats
School of Nutrition and Translational Research in Metabolism
-
BMC/Figshare: FAIR biological pathways
Anders Riutta, pvjs → JavaScript viz library for GPMLSchool of Nutrition and Translational Research in Metabolism
-
Linked chemical data
Samwald et al. (2011), J. Cheminform.10.1186/1758-2946-3-19
-
Harder
School of Nutrition and Translational Research in Metabolism
-
Open Science in an Open Access World
Egon Willighagen2020-11-12
@egonwillighagen0000-0001-7542-0286
-
Open Access in an Open Science World
Egon Willighagen2020-11-12
@egonwillighagen0000-0001-7542-0286
top related