cindy zheng, pragma9, 10/21/2005 pragma grid testbed & routine-basis experiments may – october...
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Cindy Zheng, PRAGMA9, 10/21/2005
PRAGMA Grid Testbed&
Routine-basis ExperimentsMay – October 2005
Cindy ZhengPacific Rim Application and Grid Middleware Assembly
San Diego Supercomputer CenterUniversity of California, San Diego
http://pragma-goc.rocksclusters.org
Cindy Zheng, PRAGMA9, 10/21/2005
PRAGMA Grid TestbedPRAGMA Grid Testbed
AIST, Japan
CNIC, China
KISTI, Korea
ASCC, Taiwan
NCHC, Taiwan
UoHyd, India
MU, Australia BII, Singapore
KU, Thailand
USM, Malaysia
NCSA, USA
SDSC, USA
CICESE, Mexico
UNAM, Mexico
UChile, Chile
TITECH, Japan
UMC, USA
UZurich, Switzerland
GUCAS, China
http://pragma-goc.rocksclusters.org
Cindy Zheng, PRAGMA9, 10/21/2005
PRAGMA Grid resources http://pragma-goc.rocksclusters.org/pragma-doc/resources.html
Cindy Zheng, PRAGMA9, 10/21/2005
QMMDhttp://pragma-goc.rocksclusters.org/applications/qmmd/qmmd_requirement.html
• Quantum mechanics application• Ninf-G based• Driver: Hiroshi Takemiya (AIST)• Running on 6+4 sites for 5 days• Ready on 12 sites:
– AIST: Yoshio Tanaka, Yusuke Tanimura – ASCC: Hurng-Chun Lee, Mike Chiang– CNIC: Kai Nan, Kevin Dong– KISTI: Jysoo Lee, Jae-Hyuck Kwak– KU: Somsak Sriprayoonsakul, Sugree Phatanapherom – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki – UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon– UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy– USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
Savannahhttp://pragma-goc.rocksclusters.org/applications/savannah/default.html
• Wildfire simulation• Nimrod/G based• Driver: Colin Enticott (MU)• Ready on 10 sites:
– AIST: Yoshio Tanaka, Yusuke Tanimura– ASCC: Hurng-Chun, Lee, Mike Chiang– KISTI: Jysoo Lee, Jae-Hyuck Kwak– KU: Sugree Phatanapherom, Somsak
Sriprayoonsakul– MU: David Abramson – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki– UNAM: Jose Luis Gordillo Ruiz, Eduardo
Murrieta Leon– UoHyd: Arun Agarwal, Rajeev Wankar,
Neelakanta Reddy
Cindy Zheng, PRAGMA9, 10/21/2005
Gfarmhttp://pragma-goc.rocksclusters.org/applications/gfarm/gfarm.html
• Gfarm – grid virtual file system
• Development lead: Osamu Tatebe (AIST)
• Ready on 7 sites:– AIST: Yusuke Tanimura, Yoshio Tanaka – ASCC: Mike Chiang, Hurng-Chun, Lee – KISTI: Jae-Hyuck Kwak, Jysoo Lee – NCHC: Chien-Lin Huang, Weicheng Huang – NCSA: Tom Roney, Radha Nandkumar – SDSC: Cindy Zheng, Mason Katz – TITECH: Hitoshi Aoki, Satoshi Matsuoka
Cindy Zheng, PRAGMA9, 10/21/2005
Community Scheduling Frameworkhttp://pragma-goc.rocksclusters.org/softdepot/zding_csf.ppt
• Interface GT4 and local schedulers• Implementation and deployment lead: XiaoHui Wei and
ZhaoHui Ding (JLU)• Supported by:
– SDSC: Wilfred Li, Cindy Zheng– AIST: Yoshio Tanaka
4CSF
24 3
PBSPBS
PBS
SGE
SGE
Cindy Zheng, PRAGMA9, 10/21/2005
iGAPhttp://pragma-goc.rocksclusters.org/applications/igap/igap.html
• Genome annotation pipeline
• Use CSF/Gfarm
• Driver: Wilfred Li (SDSC)
• Ready on 7 sites:– AIST: Yoshio Tanaka, Yusuke Tanimura– ASCC: Hurng-Chun Lee, Mike Chiang– KISTI: Jysoo Lee, Jae-Hyuck Kwak – NCHC: Weicheng Huang, Chien-Lin Huang– NCSA: Radha Nandkumar, Tom Roney– SDSC: Mason Katz, Cindy Zheng– TITECH: Satoshi Matsuoka, Hitoshi Aoki
Cindy Zheng, PRAGMA9, 10/21/2005
SCMSWebhttp://pragma-goc.rocksclusters.org/scmsweb/
• Grid monitoring + accounting
• Development lead: KU: Putchong Uthayopas, Somsak Sriprayoonsakul, Sugree Phatanapherom
• Collaborations:
– Solaris porting at CICESE: Raul Hazas, Areli Garcia
– IA64 porting at CNIC: Kevin Dong
• Deployed on 15 sites:– AIST: Yoshio Tanaka, Yusuke Tanimura
– ASCC: Hurng-Chun Lee, Mike Chiang
– BII: Stephen Wong, Damien Leong Wye Kit
– CICESE: Raul Hazas, Salvador Castaneda, Julian Delgado
– CNIC: Kai Nan, Kevin Dong
– KISTI: Jysoo Lee, Jae-Hyuck Kwak
– KU: Sugree Phatanapherom, Somsak Sriprayoonsakul
– NCHC: Weicheng Huang, Chien-Lin Huang
– NCSA: Radha Nandkumar, Tom Roney
– SDSC: Mason Katz, Cindy Zheng
– TITECH: Satoshi Matsuoka, Hitoshi Aoki
– UChile: Alejandro Jofre, Juan Carlos Maureira
– UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon
– UoHyd: Arun Agarwal, Rajeev Wankar, Neelakanta Reddy
– USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
MOGAShttp://ntu-cg.ntu.edu.sg/pragma/gridacctinfo
• Grid accounting system• Development lead: NTU – Francis Lee, Junwei Lee• Deployed on 7 sites:
– AIST: Yoshio Tanaka, Yusuke Tanimura
– KISTI: Jysoo Lee, Jae-Hyuck Kwak
– NCSA: Radha Nandkumar, Tom Roney
– SDSC: Mason Katz, Cindy Zheng
– TITECH: Satoshi Matsuoka, Hitoshi Aoki
– UNAM: Jose Luis Gordillo Ruiz, Eduardo Murrieta Leon
– USM(hawk): Habibah Wahab, Suhaini Ahmad
Cindy Zheng, PRAGMA9, 10/21/2005
Grid-enabling Applications• Ocean science (CICESE, Mexico)
– IGrid05 demoRaul Hazas, Luis Farfán, Salvador Castaneda,
Julian Delgado • GAMESS/APBS (UZurich, Switzerland)
Kim Baldridge, Celine Amoreira• FLARM, Drug-design (CNIC, China)
Bin Shen, Kevin Dong• San Andreas Fault simulation (iGEON)
Mian Liu (UMC), Huai Zhang (GUCAS)
Cindy Zheng, PRAGMA9, 10/21/2005
Ninf-G/NMI/Rocks Integration
• Ninf-G-2.4/NMI– Lead integrators:
• Yoshio Tanaka (AIST)• Mats Rynge (NMI)
• Ninf-G 2.4 Rocks Roll – Lead integrators:
• Mason Katz (SDSC)• Yoshio Tanaka (AIST)
Cindy Zheng, PRAGMA9, 10/21/2005
• Naregi-CA - certificate authorization system• Gama - trust management system• Collaborators:
– Naregi, Japan• Shinichi Mineo• Takto Okuno
– SDSC, USA• Sandeep Chandra• Kurt Mueller• Mason Katz• Cindy Zheng
GAMGAMAA
GAMA/Naregi-CA Integration
Cindy Zheng, PRAGMA9, 10/21/2005
Network Measurementshttp://pragma-goc.rocksclusters.org/pragma-grid-status/testbed_amp.htm
• Deployed NLANR AMP to all testbed sites• AMP data map on pragma-goc• AMP map software
– PRIME project– AMP data interface
• Collaborators:– NLANR: Tony McGregor, Ronn Ritke, Bud Hale,
Jeremy Kallstrom– UCSD: Peter Arzberger, Cindy Zheng, John Lee– CNIC: Kai Nan, Kevin Dong– UChile: Alejandro Jofre, Juan Carlos Maureira– UoHyd: Arun Agarwal, Vinod Kumar– USM(hawk): Suhaini Ahmad, Habibah Wahab,
Ruzaimi Azizan– UZurich: Kim Baldrige, Wibke Sudholt
Cindy Zheng, PRAGMA9, 10/21/2005
Group paperIssues and Methods for Building a Multi-Application International Grid Resource
Cindy Zheng, Mason Katz, Peter Arzberger, Philip M. Papadopoulos
University of California, San Diego, USA
Yoshio Tanaka, Yusuke Tanimura, Osamu Tatebe
National Institute of Advanced Industrial Science and Technology, Japan
David Abramson, Colin Enticott, Slavisa Garic, Shahaan Ayuub
Monash University, Australia
Putchong Uthayopas, Somsak Sriprayoonsakul, Sugree Phatanapherom
Kasetsart University, Thailand
Jae-Hyuck Kwak
Korea Institute of Science and Technology Information, Korea
Cindy Zheng, PRAGMA9, 10/21/2005
Thank you
http://pragma-goc.rocksclusters.org
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