closing ceremony august 20 2021 - cancer.ubrite.org

Closing Ceremony

August 20 2021

Agenda

10:00 – 10:20 Welcome and Overview

Amy Y. Wang, MD, MBI

Associate Professor of Medicine and Scientist, UAB Informatics Institute

10:20 – 10:40 Impact: Reflections from Key Stakeholders

10:40 – 10:50 Presentation of Awards

Amy Y. Wang, MD, MBI

10:50 – 10:55 Closing

Amy Y. Wang, MD

Looking Back – 2018 U-BRITE Pilot Hackathon

Jeff Edberg, PhD Lou Bridges, MD/PhD Christopher Willey, MD/PhD Eddy

Yang,

MD

…the hackathon was a significant

factor in the project's success…scheduling the

hackathon earlier in the

tool development

process would have been

even more beneficial.

Looking Back – 2020 COVID-19 Hackathon

Feedback from 2020 COVID-19 Hackathon

Cancer

Second leading cause of death worldwide

9.6 million deaths in 2018

1 in 6 deaths

$1.16 trillion estimated cost in U.S. in 2010

World Health Association. https://www.who.int/health-topics/cancer

Communication

Calendar of Events

Team 1 – Team Ditto

Team 2 – M-Precise

Libo Sun

Valeriya

Kuznetsova

Rahul Sharma

Priyanka

Gupta, PhD

Ransome

Eke, MD, PhD

Team 3 – Team Soory

Darshan

Chandrashekar, PhD

Santhosh

Karthikeyan

Zhilei “George”

Qiao, PhD

Sooryanarayana

Varambally, PhD

Team 4 - PhenoMiner

Zhiying Lu, PhD

Bharat Mishra

Nilesh Kumar

Team 5 – BirthSeq-AI

Gurpreet Kaur, PhD Brandon Wilk Shaurita Huchins Kristen Coutinho Liz Worthey, PhD

Team 6 – Alpha

Zongliang Yue, PhD

Clark Xu, MS

Vanessa Xiao

Vasileios Alevizos

Team 7 – PathologyAI

Team 8 – D TeamRadomir Slominski

Mohammad Saleem

Yuwei Song

Radomir Slominski, MD

Team 9 – Team Tokyo

Yao-Zhong Zhang

Team 10 – Team Kinome

Joshua Anderson, PhD Kevin Lee, MD, PhD Christopher Willey, MD, PhDEhsan Saghapour, PhD

Team 11 – TU-AICancer

Wu Fan, PhD

Stephen Sodeke, PhD

Xiao Chang, PhD

Team 12 – Colorectal Coders

Justin Harvell

Ph.D. Trainee

Chemical Engineering

Auburn University

Peter Abraham

B.S. Student

Chemical Engineering

Auburn University

Ifeoluwa Adebayo Odeniyi, MS

Ph.D. Trainee

Nutrition

Auburn University

Asmaa Farrag El-Sayed Othman, MPH

Ph.D. Trainee

Public Health/Community Medicine

Cairo University, Egypt

Reflections

Presentation of Awards

Judging Criteria

Significance

Appropriate team

Innovation

Approach

Scientific rigor and progress

Integrity, transparency, and sharing

Presentation Quality

Overall Impact

Third Place - $1,000

Zhiying Lu, PhD

Bharat Mishra

Nilesh Kumar

Second Place - $1,500

First Place - $2,500

Joshua Anderson, PhD

Kevin Lee, MD, PhD Christopher Willey, MD, PhD

Ehsan Saghapour, PhD

MCBIOS Interdisciplinary Team Science Award - $1,000

Diverse fields/areas of expertise

Across the translational spectrum

Multiple institutions

Different career stages

Significant contributions from all members in research, work, and presentation

Sponsored by MCBIOS

At least one member in MCBIOS

Zongliang Yue, PhD Clark Xu, MS Vanessa Xiao Vasileios Alevizos

Health Equity Award - $1,000

Prevent or reduce health

disparities – Particular differences

in health

Social, economic, environmental

disadvantages

Affect groups with systematically

greater barriers to health

Gurpreet Kaur, PhD Brandon Wilk Shaurita Hutchins Kristen Coutinho Liz Worthey, PhD

Congratulations to all Award Winners!Award

Team Name

and NumberTeam Members Title of Project

First PrizeTeam Kinome

(Team 10)

Joshua Anderson, PhD

Ehsan Saghapour, PhD

Kevin Lee, MD, PhD

Christopher Willey, MD, PhD

Development of Kinomic Profiling Signatures that Associate

with Kinase Inhibitor Sensitivity in Glioblastoma PDX

Second PrizeTeam Ditto

(Team 11)

Ryal L. Melvin, PhD

Tarun Mamidi, MS

Thi K. Tran-Nguyen, PhD

Rati Chkheidze, MD

Liz Worthey, PhD

AI Guided Multiomics Data Mapping on Pathology Whole Slide

Images of Glioblastoma

Third PrizePhenoMiner

(Team 4)

Nilesh Kumar

Bharat Mishra

Zhiying Lu, PhD

Natural Language Processing System for Retrieving Information

about Cancer Phenotypes from Published Articles

MCBIOS

Interdisciplinary

Team Science

Award

Alpha

(Team 6)

Zongliang Yue, PhD

Clark Xu, MS

Vanessa Xiao

Vasileios Alevizos

Conjunctival and Corneal Tumor detection and Recognition

Health Equity

Award

BirthSeq-AI

(Team 5)

Gurpreet Kaur, PhD

Brandon Wilk

Shaurita Hutchins

Kristen Coutinho

Liz Worthey, PhD

Development of an AI-based Approach to Better Understand

Chorangiomas by Studying Placental Heterogeneity

Hackathon Survey

Demographics – Gender, age, race/ethnicity

Location – Birmingham, Alabama, Deep South, national, international

Role – Organization type, title/position

Learning about the hackathon

Reason for joining

Prior experience

Likes and dislikes

Readiness, progress

Hackathon length

Comments and suggestions

What is your age?

Your Comments and Suggestions “Awesome~ we met together and learned a lot from teammates and competitors.“

"Overall, I really enjoyed the hackathon. Thanks for organizing it!"

“Great platform to learn new concepts and establish good collaborations."

"Special Lecture by Jake Chen...was great and informative. I wish it should have been

delivered earlier…to help the researchers who are beginners in ML.

"Will it happen next year?"

"Would be nice to collaborate with more exclusive, clinical datasets only for the

hackathon. Thank you everyone :-)"

"Time for showcase is not enough“

"Earlier announcement and preparation“, “sharing the resources and links with better

documentation“, “present the contact information clearly“, “team formation process

could be more clear.”

"Too formal....have the lead up sessions simply be a workshop....It felt a bit daunting.

Thanks to our Sponsors

Organizing Committee

Matt Wyatt Jelai Wang

Jake Chen

Heather Watts Amanda Carballo Nafisa Ayala

Amy Wang Matt Might Andrew Crouse Lucio MieleJennifer Croker

Acknowledgments

Organizing Committee: Amy Wang, MD, MBI, Jake Chen, PhD, Matt Might, PhD, Andrew Crouse, PhD,

Lucio Miele, Md, PhD, Zhandos Sembay Jelai Wang, MS, Matt Wyatt, MS, Jennifer Croker, PhD,

Heather Watts, Nafisah Ajala, Amanda Carballo

Awards Committee: Lucio Miele, MD, PhD, Aik Choon Tan, PhD, Steve Qin, PhD, Jake Chen, PhD

Judges: Aik Choon Tan, PhD, Steve Qin, PhD, Nimrita Koul, Jennifer Croker, PhD, Andrew Azuero, PhD,

MBA, Sadeep Shrestha, PhD, Zechen Chong, Min Gao, PhD, Thanh Nguyen, PhD

Thank you!

Questions?

See you at the next hackathon!

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