downloaded from on april 4, 2020 by guest · tzv vdpsohg ll wkh67 l h wkhvdph67exwvhsdudwhge\odujh...

Escherichia coli

E. coli

JCM Accepted Manuscript Posted Online 22 April 2015J. Clin. Microbiol. doi:10.1128/JCM.00378-15Copyright © 2015, American Society for Microbiology. All Rights Reserved.

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

E. coli

E. coli

E. coli

bla

bla bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

E. coli

E. coli

E. coli

E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Staphylococcus aureus

E. coli

Sample description

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Laboratory methods

E. coli

E. coli

DNA extraction and sequencing

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Sequence read processing and data analysis

E. coli

de novo

in silico de

novo

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

Clostridium difficile

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

E. coli

E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E.

coli de novo

In silico multi-locus sequence (MLST) typing

silico E. coli

fumC purA recA

Determination of genotypes accounting for cefpodoxime resistance

bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

bla

bla bla

bla

bla

bla

bla bla

Analysis of within-host E. coli core and accessory genome diversity

E. coli

bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Significance of the study and implications for transmission studies of intestinally

carried CTX-M-positive E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

E. coli

E. coli

bla

E. coli

Clostridium difficile

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

in silico

E. coli

Limitations of the study

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

E. coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

bla bla

bla

bla

bla

bla

bla bla

bla

bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

bla

bla

bla on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

bla

bla bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

bla

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia

Enterobacter cloacae

Escherichia coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Klebsiella pneumoniae

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Klebsiella

pneumoniae

Escherichia coli

Escherichia coli

Staphylococcus aureus

Staphylococcus aureus

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

C. difficile

Escherichia coli

Escherichia coli Klebsiella pneumoniae

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

Escherichia coli

Escherichia coli

Clostridium difficile

Escherichia coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

Escherichia coli

Escherichia coli

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from

on May 25, 2020 by guest

http://jcm.asm

.org/D

ownloaded from