facilitating next generation science collaboration: marine ecosystems status reports and assessments...

Facilitating Next Generation Science Collaboration: Marine Ecosystems Status

Reports and Assessments

June 24, 2014 IMBER – D2

Peter Fox (RPI/ Tetherless World Constellation and WHOI/AOP&E) pfox@cs.rpi.edu (@taswegian) and collaborators on the NSF INTEROP ECOOP project. http://tw.rpi.edu/web/project/ECOOP

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Why important?

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Vision?

• “Our vision is to develop, facilitate, and maintain sustained multi-way engagement of natural and social scientists and many practitioners in multi-scale local to global networks for LMEs”.

• Goal: We want to perform routine assessments of LMEs involving all (or as many) stakeholders and we want robust science data presented in forms that various end-users can consume… and verify

Environmental Assessment

Northeast Status Report

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Generation

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Tracing

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Traceability

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Leveraging the Global Change Information System

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Instrument a tool - iPython

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http://ipython.org/Screenshot of IPython Notebook used to track both data and workflow

provenance

Code inPython,Matlab,R, other Stace Beaulieu

http://ipython.org/Screenshot of IPython Notebook used to track both data and workflow

provenance

Notebook can be shared, or output as script, HTML, PDF,other Stace Beaulieu

PDF output of IPython Notebook with clickable links to data and code

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Screenshot of csv file at GitHub

Access not only to the data that are plotted, but also to provenance metadata for reproducibility

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Outcomes

• Implemented PROV-O in iPython NoteBook*

• Extended global change information system ontology for this work to include dataset generation

• Improved the practice of annotation and generation of report materials

Thanks!

Past Experience with PROV

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Extended Use Case

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