galaxy on the genomecloud (galaxy community conference 2014)
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on theYet another on-demand Galaxy cloud,
but only powered by Apache CloudStack
6 9
2
2
1
1
1014
# GCC 2014 Talks
# GCC 2014 Posters
Korea
http://genome-cloud.com
2X more hosts than
GenomeCloud
0
0.5
1
1.5
2
2.5
3
U S E G A L A XY . O R G G E N O ME - C L O U D . C O M
DATA TRANSFER SPEED (MB/S)
Launch
GenomeCloud2012.12
Start Galaxy setup in servers
• 2013.7
Complete Galaxy system architecture and software stacks•2013.9
Automated and integrated with GenomeCloud•2013.12
Launch
Galaxy on the GenomeCloud
• 2014.01
OS(Linux [ubuntu v12])
Python
DBMS
[Postgr
eSQL]
HTTP Server
[NGINX]
FTP Server
[ProFTPD]
Ganglia Master
Grid Engine
(Head)
Galaxy
Job
Handler0
Job
HandlerN
Web
Handler0
Web
HandlerNNFS/LVM
NTP
(Server)
HTTP Server
[Apache]
OS(ubuntu v12)
Grid Engine
(Worker)
NTP
(Client)
NFS
(Client)
Ganglia
(slave)
R / R packages
Head Worker
Galaxy
Users
Head
Worker X N
Galaxy
Cluster
Central NFS
/DB/BIO
Galaxy core, tools, user data
Shared storage for Grid Engine
1 2
1
2 Reference genomes data,
Genome data locations
NFS
Clustering
,
Software
setup,
Galaxy
setup
Deploy
head node
Associate
public IP
Create port
forwarding
rule
Create and
attach disk
volumes
Deploy
worker
nodes
1
4
3
2
5
6
Clo
ud
Sta
ck A
PIs
Head
Worker X 15
Galaxy Cluster
Workshop
/BIO
Head
Worker X N
Galaxy Cluster
Research
/BIO X N
100
GB100
GB
OS(Linux [ubuntu v12])
DBMS
Nginx
FTP Server
Ganglia Master
Grid Engine
(Head)
Galaxy
NFS/LVM
Apache
OS(ubuntu v12)
Gride Engine
(Worker)
NFS/LVM
(Client)
Ganglia
(slave)
R / R packages
Head Worker
Galaxy
Users
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