grid activities at mta sztaki

GRID activities at MTA SZTAKI

Peter Kacsuk

MTA SZTAKI

Laboratory of Parallel and Distributed Systems

www.lpds.sztaki.hu

ContentsContents

• SZTAKI participation in EU and Hungarian Grid projects

• P-GRADE (Parallel Grid Run-time and Application Development Environment)

• Integration of P-GRADE and Condor• TotalGrid• Meteorology application by TotalGrid• Future plans

Hungarian and international GRID projects

CERN LHC Grid

VISSZKI-Globus test-Condor test

DemoGrid - file system - monitoring- applications

SuperGrid - P-GRADE- portal- security- accounting

Condor

EU DataGrid

EU COSTSIMBEX

APART-2

EUGridLab

Cactus

EU Grid projects of SZTAKIEU Grid projects of SZTAKI

• DataGrid – application performance monitoring and visualization

• GridLab – grid monitoring and information system

• APART-2 – leading the Grid performance analysis WP

• SIMBEX – developing a European metacomputing system for chemists based on P-GRADE

Hungarian Grid projects of SZTAKIHungarian Grid projects of SZTAKI

• VISSZKI– explore and adopt Globus and Condor

• DemoGrid – grid and application performance monitoring and

visualization• SuperGrid (Hungarian Supercomputing Grid)

– integrating P-GRADE with Condor and Globus in order to provide a high-level program development environment for the Grid

• ChemistryGrid (Hungarian Chemistry Grid) – Developing chemistry Grid applications in P-GRADE

• JiniGrid (Hungarian Jini Grid) – Combining P-GRADE with Jini and Java– Creation the OGSA version of P-GRADE

• Hungarian Cluster Grid Initiative– To provide a nation-wide cluster Grid for universities

Structure of theStructure of the HungarianHungarian Supercomputing Supercomputing GridGrid

2.5 Gb/s Internet

NIIFI 2*64 proc. Sun E10000

BME 16 proc. Compaq AlphaServer

ELTE 16 proc. Compaq AlphaServer

• SZTAKI 58 proc. cluster

• University (ELTE, BME) clusters

P-GRADE

PVM MW

Condor-G

Globus

SUN HPC

Compaq AlphaServer

Compaq AlphaServer

Grid middleware

Grid fabric

High-level parallel development layer

Grid level job management

Condor, SGE

MPI

GRID portal

Web based GRID access

Condor, SGE

GRID application

GRID application

Low-levelparallel development

The Hungarian Supercomputing GRID project

Condor, SGEClusters

Condor, SGE

Distributed supercomputing: P-GRADEDistributed supercomputing: P-GRADE

• P-GRADE (Parallel Grid Run-time and Application Development Environment)

• A highly integrated parallel Grid application development system

• Provides:– Parallel, supercomputing programming for the Grid – Fast and efficient development of Grid programs– Observation and visualization of Grid programs– Fault and performance analysis of Grid programs

• Further development in the: – Hungarian Supercomputing Grid project– Hungarian Chemistry Grid project– Hungarian Jini Grid project

Three layers of GRAPNELThree layers of GRAPNEL

Communication TemplatesCommunication Templates

• Pre-defined regular process topologies– process farm– pipeline– 2D mesh

• User defines: – representative

processes– actual size

• Automatic scaling

Mesh TemplateMesh Template

Hierarchical Hierarchical DebuggingDebuggingby DIWIDEby DIWIDE

Macrostep DebuggingMacrostep Debugging

Support for systematic debugging to handle non-deterministic behaviour of parallel applications

Automatic dead-lock detection

Replay technique with collective breakpoints

Systematic and automatic generation of Execution Trees

Testing parallel programs for every time condition

GRM semi-on-line monitorGRM semi-on-line monitor

• Monitoring and visualising parallel programs at GRAPNEL level.

• Evaluation of long-running programs based on semi-on-line trace collection

• Support for debugger in P-GRADE by execution visualisation

• Collection of both statistics and event traces

• Application monitoring and visualization in the Grid

• No lost of trace data at program abortion. The execution can be visualised to the point of abortion.

PROVE Statistics WindowsPROVE Statistics Windows

Profiling based on counters Analysis of very long running

programs is enabled

PROVE: Visualization of Event TracesPROVE: Visualization of Event Traces

User controlled focus on processors, processes and messages

Scrolling visualization windows forward and backwards

Integration of Integration of Macrostep Macrostep Debugging Debugging and PROVEand PROVE

Features of Features of P-GRADEP-GRADE

Designed for non-specialist programmers Enables fast reengineering of sequential

programs for parallel computers and Grid systems

Unified graphical support in program design, debugging and performance analysis

Portability on supercomputers heterogeneous clusters components of the Grid

Two execution modes: Interactive mode Job mode

P-GRADE Interactive ModeP-GRADE Interactive Mode

P-GRADEInteractive

mode

Design/Edit

Compile

Map Debug

Monitor

VisualizeDevelopment cycle

Typical usage on supercomputers or clusters

P-GRADE Job Mode with CondorP-GRADE Job Mode with Condor

P-GRADEand

Condor

Compile

Design/Edit

CondorMap

Attach

Detach

Submit job

Typical usage on clusters or in the Grid

Condor/P-GRADE on the whole range of Condor/P-GRADE on the whole range of parallel and distributed systemsparallel and distributed systems

Super-computers

2100 2100 2100 2100

2100 2100 2100 2100

Clusters Grid

GFlops

Mainframes

P-GRADE

Condor

P-GRADE

Condor

P-GRADE

Condor flocking

Berlin CCGrid Grid Demo workshop: Berlin CCGrid Grid Demo workshop: Flocking of P-GRADEFlocking of P-GRADE programs by Condorprograms by Condor

m0 m1

P-GRADEBudapest

Budapest

n0 n1

Madison

p0 p1

Westminster

P-GRADE program runs at the Madison cluster

P-GRADE program runs at the Budapest cluster

P-GRADE program runs at the Westminster cluster

Next step: Check-pointing and Next step: Check-pointing and migration of P-GRADEmigration of P-GRADE programsprograms

m0 m1

P-GRADEGUI

Wisconsin

Budapest

n0 n1

London1

P-GRADE program downloaded to London as a Condor job

2

P-GRADE program runs at the London cluster

London cluster overloaded => check-pointing

3

P-GRADE program migrates to Budapest as a Condor job

4P-GRADE program runs at the Budapest cluster

Further develoFurther developpment: TotalGridment: TotalGrid

• TotalGrid is a total Grid solution that integrates the different software layers of a Grid (see next slide) and provides for companies and universities – exploitation of free cycles of desktop

machines in a Grid environment after the working/labor hours

– achieving supercomputer capacity using the actual desktops of the institution without further investments

– Development and test of Grid programs

Layers of TotalGridLayers of TotalGrid

Internet Ethernet

PVM or MPI

Condor or SGE

PERL-GRID

P-GRADE

PERL-GRIDPERL-GRID

• A thin layer for – Grid level job management between P-

GRADE and various local job managers like• Condor• SGE, etc.

– file staging

• Application in the Hungarian Cluster Grid

Hungarian Cluster Grid InitiativeHungarian Cluster Grid Initiative

• Goal: To connect the 99 new clusters of the Hungarian higher education institutions into a Grid

• Each cluster contains 20 PCs and a network server PC.– Day-time: the components of the clusters are used for

education– At night: all the clusters are connected to the Hungarian

Grid by the Hungarian Academic network (2.5 Gbit/sec)– Total Grid capacity by the end of 2003: 2079 PCs

• Current status:– About 400 PCs are already connected at 8 universities– Condor-based Grid system– VPN (Virtual Private Network)

• Open Grid: other clusters can join at any time

Structure of the Structure of the Hungarian Cluster GridHungarian Cluster Grid

2.5 Gb/s Internet

2003: 99*21 PC Linux clusters, total 2079 PCs

Condor => TotalGrid

Condor => TotalGrid

Condor => TotalGrid

Live demonstration of TotalGridLive demonstration of TotalGrid

• MEANDER Nowcast Program Package:– Goal: Ultra-short forecasting (30 mins)

of dangerous weather situations (storms, fog, etc.)

– Method: Analysis of all the available meteorology information for producing parameters on a regular mesh (10km->1km)

• Collaborative partners:– OMSZ (Hungarian Meteorology Service)– MTA SZTAKI

Structure of MEANDERStructure of MEANDER

First guess dataALADIN

SYNOP data Satelite Radar

CANARIDelta analysis

Basic fields: pressure, temperature, humidity, wind.

Derived fields: Type of clouds, visibility, etc.

GRID

Radar to grid

Satelite to grid

Current time

Type of clouds

Overcast

Visibility

Rainfall state

VisualizationFor meteorologists:HAWK

For users: GIF

Lightning

decode

P-GRADE version of MEANDERP-GRADE version of MEANDER

25 x

10 x 25 x 5 x

Implementation Implementation of the Delta of the Delta method in method in P-GRADEP-GRADE

netCDFoutput

34 MbitShared

PERL-GRIDCONDOR-PVM

job

11/5 MbitDedicated

P-GRADEPERL-GRID

job

HAWK

netCDFoutput

Live demo of MEANDER Live demo of MEANDER based on TotalGridbased on TotalGrid

ftp.met.hu

netCDF

512 kbitShared

netCDFinput

Parallel execution

Results of the delta methodResults of the delta method

• Temperature fields at 850 hPa pressure• Wind speed and direction on the 3D mesh of the MEANDER system

GRMTRACE

34 MbitShared

PERL-GRIDCONDOR-PVM

job

11/5 MbitDedicated

P-GRADEPERL-GRID

job

On-line Performance Visualization in On-line Performance Visualization in TotalGridTotalGrid

ftp.met.hu

netCDF

512 kbitShared

netCDFinput

Parallel execution and GRM

GRMTRACE

PROVE PROVE performance performance visualisationvisualisation

Edit, debugging

Performance-analysis

Execution

P-GRADEP-GRADE: Software Development and : Software Development and ExecutionExecution

Grid

Applications in P-GRADEApplications in P-GRADE

Completed applications• Meteorology: Nowcast package (Hungarian

Meteorology Service)• Urban traffic simulation (Univ. of Westminster)

Applications under development• Chemistry applications • Smog forecast system• Analysis of smog alarm strategies

Further extensions of P-GRADEFurther extensions of P-GRADE

• Automatic check-pointing of parallel applications inside a cluster (already prototyped)– Dynamic load-balancing at – Fault-tolerant execution mechanism

• Automatic check-pointing of parallel applications in the Grid (under development)– Automatic application migration in the Grid– Fault-tolerant execution mechanism in the Grid– Saving unfinished parallel jobs of the Cluster Grid

• Extensions under design– Parameter study support– Connecting P-GRADE with GAT– Workflow layer for complex Grid applications

Workflow interpretation of Workflow interpretation of MEANDERMEANDER

1st job

2nd job 3rd job 4th job

5th job

ConclusionsConclusions

• SZTAKI participates in the largest EU Grid projects and in all the Hungarian Grid projects

• Main results:– P-GRADE (SuperGrid project)– Integration of P-GRADE and Condor (SuperGrid)

• demo at Berlin CCGrid

– TotalGrid (Hungarian Cluster Grid)– Meteorology application in the Grid based on

the P-GRADE and TotalGrid approaches• demo at the 5th EU DataGrid conference

• Access of P-GRADE 8.2.2:

www.lpds.sztaki.hu

Thanks for your attention

Thanks for your attention

?

Further information: www.lpds.sztaki.hu

GRM semi-on-line monitorGRM semi-on-line monitor

• Semi-on-line– stores trace events in local storage (off-line)– makes it available for analysis at any time during

execution for user or system request (on-line pull model);

• Advantages– analyse the state (performance) of the application at

any time– scalability: analyse trace data in smaller sections and

delete them if they are not longer needed – Less overhead/intrusion to the execution system

than with on-line collection (see NetLogger)– Less network traffic: pull model instead of push

model. Collections initiated only from top.

GRM/PROVE in the DataGrid project

Basic tasks:

step 1: To create a GRM/PROVE version that is independent from P-GRADE and runable in the Grid

step 2: To connect the GRM monitor to the R-GMA information system

Main MonitorMM

App. Process App. ProcessApp. Process

Site 1

Submit machine

PC 1 PC 2 PC 1

Local MonitorLM

Local MonitorLM

Site 2

Local MonitorLM

GRM GRM in the in the gridgrid

App. Process

shm shm shm

Trace file PROVE

Pull model => smaller network traffic than in NetLogger

Local monitor => more scalable than NetLogger

Start-up of Local MonitorsStart-up of Local Monitors

Submit host Site

Server host

host 2 host 4

host 3

Grid broker

LAN

Local job manager

applicationprocess1

LocalMonitor

MainMonitor

GUI

WAN

applicationprocess2

LocalMonitor

MM Host:port

This mechanism is used in TotalGrid and in the live demo

Main Monitor

Site

Client machine

Machine 1

App.Process

App.Process

App.Process

R-GMA

PROVE

2nd step: Integration with2nd step: Integration with R-GMA R-GMA

Machine 2

Sensor

ProducerAPI

Application

ConsumerAPI

R-GMA R-GMA

Producer Servlet

RegistryAPI

Registry Servlet

SchemaAPI

Schema Servlet

“database of event types”

Consumer Servlet

RegistryAPI

Main Monitor

Instrumented application code

SQL SELECT

XML

SQL CREATE TABLE

SQL INSERT

Integration withIntegration with R-GMA R-GMA