publish or perish : how to write and submit a research manuscript

Publish or Perish:How to write and submit a research manuscript

Workshop3 July 2013

Who we are?• Peer-reviewed• Open access• Multidisciplinary

• Mission and Vision: Platform for relevant HIV research accessible to all stakeholders. We encourage submissions from LMIC.

• Published by

Impact Factor: 3.936

Agenda

Session outline

14h30-15h50 How to write a research manuscript15h50-16h10 Choosing a journal and submitting a manuscript 16h10-16h25 Editorial decision making and common reasons for rejection16h25-16h40 Responding to reviewers and revising a manuscript16h40-17h00 Scientific integrity in publishing17h00-17h30 Question-answer time with editors’ panel

XIX International AIDS Conference www.aids2012.org

From a scientific point of view –

Results that are not published mean the research did not take

place

Type of research

• Qualitative (Social and Political Sciences, Humanities)

• Quantitative (Basic, Biomedical and Clinical Sciences)

• Case studies / Mixed method

How to write a research manuscriptPart 1: Papa Salif Sow

What makes a good manuscript?

It’s all about the question …

QuestionAnalysis of the

data

Design and implementation of

research

Discussion of the findings

Manuscript structure (IMRaD)

Title/title pageAbstract

IntroductionMethods and materials

ResultsTables and Figures

DiscussionReferences

What is the most important part of a scientific article? ...

Title

Title

Abstract

Maintext

The part most often readOften the only part read

ShortSpecific

RepresentativeInformative

Title – Individual Exercise 1

What different types of information does this title contain?

Effect of multiple micronutrient supplementation on survival of HIV-infected children in Uganda: a randomised controlled trial

Title – Individual Exercise 1

Effect of multiple micronutrient supplementation on survival of HIV-infected children in Uganda: a randomised controlled trial

Ndeezi et al, JIAS 2010

Study population Setting Study design

Intervention Outcome

Title – Group Exercise 2 (5min)

What information is missing in this title and what would be a better alternative?

Alcohol intake increases sexual risk behaviour

Title – Group Exercise 2

What? Alcohol intake and sexual risk behaviour Who? ? eg. adolescentsHow? ? eg. survey, cross-sectional studyWhere? ? eg. Thailand

A survey on the effect of alcohol intake on sexual risk behaviour among Thai adolescents

Abstract• Main problems encountered by editors:

– Inconsistent – Incomplete

• Brief summary • Complete

– Background– Experimental design– Major findings– Conclusion

• Stand alone• Consistent with the paper

Title

Abstract

Maintext

Introduction: What was your question

• Background – what is the topic • Context – what is known, what previous research has been done • Challenge – nature and importance of knowledge gap• Question – what was the aim of the study

Problem: the reason for the study is not clear

Funnel-shaped, from general to specific

Introduction – Group Exercise (5min)

In which order would you place these sentences in your introduction?– A Although a more strategic monitoring for ART efficacy is now

also recommended, virological monitoring is still not feasible for the majority of patients

– B Here we describe virological outcome and emergence of drug resistance in a cross-sectional study

– C Implementation of ART is recognized as a public health priority in resource-limited countries

– D It is thus important to evaluate the outcome and effectiveness of ART programmes in routine care settings

… And why?

C Implementation of ART is recognized as a public health priority in resource-limited countries BACKGROUND

A Although a more strategic monitoring for ART efficacy is now also recommended, virological monitoring is still not feasible for the majority of patients CONTEXT

B Here we describe virological outcome and emergence of drug resistance in a cross-sectional study AIM

D It is thus important to evaluate the outcome and effectiveness of ART programmes in routine care settings CHALLENGE

Dagnra et al, JIAS 2011

Methods and Materials: How did you study your question?

• Validates your study• Use subheadings to organize this section if needed• Details on ethical approval and patient consent• Detailed enough to allow replication

– Procedures, materials used, data collected, data analysis and statistical methods

• Past tense

• No results yet!

Methods• Who? …was the study population?• What? …was the primary outcome?• How? …was the outcome measures?• Where? …did the study take place?• When? …was the data collected?

Sufficient details Word limit of manuscript

How to write a research manuscriptPart 2: Mark Wainberg

Results: What findings did your question generate?

• What is the best way to present your data: table, figure or text?– Avoid repetition– Be specific

• Present only the results relevant to your question• Relate results to methods, but do not describe them again

• Do not discuss yet! And be precise!

Careful with the word ‘significant’ and vagues terms (some - many - few)

Results: Gender analysis

• Study participants Sex/Gender numbers Single-sex study, …why?

• Sex-disaggregated data Reporting results of sub-populations

• Gender analysis Effect of…, associated with…?

Figures – Vote Exercise

Source: UNAIDS/WHO, 2008

0

5

10

15

20

25

1990 1993 1996 1999 2002 2005

Adult HIVprevalence (%)High estimate

Low estimate

Which of these graphs is better to show change over time?

A. B.

Figures: different figures for different messages

A line graph is better to show data over time or

trends

Source: UNAIDS/WHO, 2008

Source: UNAIDS/WHO, 2006

A bar graph would work better for a different type

of data for example ratios

Figures: different figures for different messages

Figures and Tables

• Only when helpful to convey information• Should be understandable without text• Choose type based on the kind of data you have• Avoid overlap with text • Informative titles and additional details in legend• Label all axes, columns and rows• Careful with colours (colour blindness and black/white

printing)

Discussion: How did the findings answer your question?

• Do not repeat results, but should be based on the results!

• Discuss the importance and implications of your findings

• Use separate paragraphs for different points you are making

• Use key references to place your study within context

• Did the results answer your question?

Discussion

• In our study, more than 35% of patients attending the Themba Lethu Clinic in Johannesburg, South Africa, failed to attend at least one clinic visit on time in the first six months of treatment. This finding is consistent with previous reports, from industrialized countries, documenting 25%-44% of recently diagnosed HIV-infected individuals failing to adhere to scheduled visits early on in their care or treatment [28-32].

• Documenting the amount of missed visits early on in treatment is critical because of its potential implications for poorer treatment outcomes. Previous studies have shown that patients who miss visits soon after initiating ART are at increased risk of early mortality and loss [16,17].

• Our data are not able to elucidate the specific mechanisms by which missing visits lead to poorer outcomes, but it is likely that this is a marker for poor adherence.

• Our results also support previous research showing that older patients mount poorer CD4 cell count responses [33],

• Surprisingly, we did not detect a relationship between CD4 count and missed visits in our population. Distrust in the healthcare system, stigmatization of those infected by their communities and patient financial constraints could also play a major role in how adherent patients are to visit schedules in a resource-limited setting [39]. Brennan et al, JIAS 2010, 13:49

Limitations and ConclusionsLimitations• Last paragraph before conclusion• You can mention the strengths of the study• Discuss any limitations including

– how do they affect your data – if applicable how you addressed them– any further implications– mention all relevant ones

Conclusions• Main take-home messages• More general, but not overgeneralize!• Wider implications, recommendations and future research

What where – Group Exercise (5min)

1. Biomarker testing was completed for 1108 participants out of the total sample of 1127 IDUs.

2. Five cross-sectional surveys of IDUs were conducted in Georgia in 2009. 3. Comparison with our study findings demonstrates increases in HIV prevalence

in both locations. 4. The study protocols and questionnaires were approved by the Ethics Review

Committee. 5. HIV prevention in this sub-population, therefore, may lie in strengthening

harm-reduction programmes.6. Major characteristics of the sample were median age 35 years, male 98.7%

and married 49.7%.7. Injection drug use remains a major risk factor for HIV transmission.8. More research is required to analyze the determinants of HIV risk

in Georgian IDUs.

Which section do each of these sentences belong to?

What where – Group Exercise

Adapted from Chikovani et al, JIAS 2011

1. Biomarker testing was completed for 1108 participants out of the total sample of 1127 IDUs. Results

2. Five cross-sectional surveys of IDUs were conducted in Georgia in 2009. Methods

3. Comparison with our study findings demonstrates increases in HIV prevalence in both locations. Discussion

4. The study protocols and questionnaires were approved by the Ethics Review Committee. Methods

5. HIV prevention in this sub-population, therefore, may lie in strengthening harm-reduction programmes. Discussion

6. Major characteristics of the sample were median age 35 years, male 98.7% and married 49.7%. Table!

7. Injection drug use remains a major risk factor for HIV transmission. Introduction

8. More research is required to analyze the determinants of HIV risk in Georgian IDUs. Discussion

Which section of a manuscript usually contains the most errors?

References• Credibility

– Knowledge and awareness of the field– Validate your claims and arguments

• Format your references according to the journal’s guidelines

• Read your sources!!