weka & knime open source machine learning tools · 2009-12-30 · introduction • open source...

WEKA & KNIME

Open Source Machine Learning Tools

Abd-ur-Rehman

Sajid Mahmood

Agenda

• Introduction

• List of Open Source Machine Learning Tools

– WEKA

– KNIME

• Supported Formats by WEKA & KNIME

– CSV

– ARFF

• Techniques presented

• Data Sets Used

• Demonstration

Introduction

• Open source softwares becoming increasingly accepted.

• Variety of open source Machine Learning tools available

• Equally popular in both researchers and practitioners.

• Increasing demand for integrated environments to experiment

and evaluate Machine Learning algorithms

#4

• Weka 3, Data Mining Software in Java

• KNIME, Konstanz Information Miner (Java)

• D2K, Data to Knowledge (Java)

• RapidMiner (formerly YALE, Yet Another Learning Environment) (Java)

• Orange, a component-based data mining software (C++)

• MLC++ is a library of C++ classes for supervised machine learning

WEKA: Main Features

• 49 data preprocessing tools

• 76 classification/regression algorithms

• 8 clustering algorithms

• 10 feature selection algorithms

• 3 algorithms for finding association rules

• 3 graphical user interfaces

– “The Explorer” (exploratory data analysis)

– “The Experimenter” (experimental environment)

– “The KnowledgeFlow” (new process model inspired interface)

6

WEKA Purpose

• Used for research, education, and applications

• Main features:

– Comprehensive set of data pre-processing tools, learning

algorithms and evaluation methods

– Graphical user interfaces (incl. data visualization)

– Environment for comparing learning algorithms

• Can be used in two different ways:

– User approach

• Experimental & Explorer options

– Developmental approach

• Using compressed library source code

7

User Approach

• The explorer view allows options for:

– Import Data

• from files in various formats or from URL or an SQL

database (using JDBC)

– Pre-processing

• tools in WEKA are called “filters”

– Classification

• Decision trees and lists, instance-based classifiers, support

vector machines, multi-layer perceptrons, logistic regression,

Bayes’ nets

– Clustering

• k-Means, EM, Cobweb, X-means, FarthestFirst

– Associations

• Contains a version of the Apriori algorithm, works only with

discrete data

Supported File Formats

• CSV

• ARFF

• URL

• Database using jdbc connection

Flat file in .CSV format (Heart-Disease)

Age, sex, chest_pain_type, cholesterol, exercise_induced_angina,class

63,male,typ_angina,233,no,not_present

67,male,asympt,286,yes,present

67,male,asympt,229,yes,present

38,female,non_anginal,?,no,not_present

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Flat file in .ARFF format (Heart-Disease)

• WEKA only deals with flat files, e.g.,@relation heart-disease

@attribute age numeric

@attribute sex { female, male}

@attribute chest_pain_type { typ_angina, asympt, non_anginal, atyp_angina}

@attribute cholesterol numeric

@attribute exercise_induced_angina { no, yes}

@attribute class { present, not_present}

@data

63,male,typ_angina,233,no,not_present

67,male,asympt,286,yes,present

67,male,asympt,229,yes,present

38,female,non_anginal,?,no,not_present

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KNIME: Interactive Data Exploration

Features:

Modular Data Pipeline Environment

Large collection of Data Mining techniques

Data and Model Visualizations

Interactive Views on Data and Models

Java Code Base as Open Source Project

Integration with: R Library, Weka, etc.

Based on the Eclipse Plug-in technology

Easy extendibilityNew nodes via open API and integrated wizard

Data Sets Used

• Manually Generated

– 2 features

– 3 classes

– 10 instances per class

• Iris Data Set– 4 features

– 3 classes

– 50 instances per class

Manually Generated

X Y class

7.2 7.9 c3

8.1 7.1 c3

7.5 7.9 c3

7.6 8.3 c3

7.5 7.1 c3

7.8 7.6 c3

8 7.4 c3

7.4 8.1 c3

7.8 8.1 c3

7.3 8.3 c3

X Y class

2.2 2.9 c1

3.1 2.1 c1

2.5 2.9 c1

2.6 3.3 c1

2.5 2.1 c1

2.8 2.6 c1

3 2.4 c1

3.1 3.1 c1

2.8 3.1 c1

3.1 3.3 c1

X Y class

7.2 2.9 c2

7.9 2.1 c2

7.5 2.9 c2

7.6 3.3 c2

7.5 2.1 c2

7.8 2.6 c2

7.4 2.4 c2

8.1 3.1 c2

7.8 3.1 c2

8.1 3.3 c2

0

1

2

3

4

5

6

7

8

9

0 1 2 3 4 5 6 7 8 9

Series1

Series2

Series3

Sepal

Length

Sepal

Width

Petal

Length

Petal

WidthClass

5.1 3.5 1.4 0.2 Iris-setosa

4.9 3 1.4 0.2 Iris-setosa

4.7 3.2 1.3 0.2 Iris-setosa

4.6 3.1 1.5 0.2 Iris-setosa

5 3.6 1.4 0.2 Iris-setosa

5.4 3.9 1.7 0.4 Iris-setosa

4.6 3.4 1.4 0.3 Iris-setosa

5 3.4 1.5 0.2 Iris-setosa

4.4 2.9 1.4 0.2 Iris-setosa

4.9 3.1 1.5 0.1 Iris-setosa

5.4 3.7 1.5 0.2 Iris-setosa

4.8 3.4 1.6 0.2 Iris-setosa

4.8 3 1.4 0.1 Iris-setosa

4.3 3 1.1 0.1 Iris-setosa

5.8 4 1.2 0.2 Iris-setosa

5.7 4.4 1.5 0.4 Iris-setosa

5.4 3.9 1.3 0.4 Iris-setosa

5.1 3.5 1.4 0.3 Iris-setosa

5.7 3.8 1.7 0.3 Iris-setosa

5.1 3.8 1.5 0.3 Iris-setosa

5.4 3.4 1.7 0.2 Iris-setosa

5.1 3.7 1.5 0.4 Iris-setosa

4.6 3.6 1 0.2 Iris-setosa

5.1 3.3 1.7 0.5 Iris-setosa

4.8 3.4 1.9 0.2 Iris-setosa

Sepal

Length

Sepal

Width

Petal

Length

Petal

WidthClass

7 3.2 4.7 1.4 Iris-versicolor

6.4 3.2 4.5 1.5 Iris-versicolor

6.9 3.1 4.9 1.5 Iris-versicolor

5.5 2.3 4 1.3 Iris-versicolor

6.5 2.8 4.6 1.5 Iris-versicolor

5.7 2.8 4.5 1.3 Iris-versicolor

6.3 3.3 4.7 1.6 Iris-versicolor

4.9 2.4 3.3 1 Iris-versicolor

6.6 2.9 4.6 1.3 Iris-versicolor

5.2 2.7 3.9 1.4 Iris-versicolor

5 2 3.5 1 Iris-versicolor

5.9 3 4.2 1.5 Iris-versicolor

6 2.2 4 1 Iris-versicolor

6.1 2.9 4.7 1.4 Iris-versicolor

5.6 2.9 3.6 1.3 Iris-versicolor

6.7 3.1 4.4 1.4 Iris-versicolor

5.6 3 4.5 1.5 Iris-versicolor

5.8 2.7 4.1 1 Iris-versicolor

6.2 2.2 4.5 1.5 Iris-versicolor

5.6 2.5 3.9 1.1 Iris-versicolor

5.9 3.2 4.8 1.8 Iris-versicolor

6.1 2.8 4 1.3 Iris-versicolor

6.3 2.5 4.9 1.5 Iris-versicolor

6.1 2.8 4.7 1.2 Iris-versicolor

6.4 2.9 4.3 1.3 Iris-versicolor

Sepal

Length

Sepal

Width

Petal

Length

Petal

WidthClass

6.3 3.3 6 2.5 Iris-virginica

5.8 2.7 5.1 1.9 Iris-virginica

7.1 3 5.9 2.1 Iris-virginica

6.3 2.9 5.6 1.8 Iris-virginica

6.5 3 5.8 2.2 Iris-virginica

7.6 3 6.6 2.1 Iris-virginica

4.9 2.5 4.5 1.7 Iris-virginica

7.3 2.9 6.3 1.8 Iris-virginica

6.7 2.5 5.8 1.8 Iris-virginica

7.2 3.6 6.1 2.5 Iris-virginica

6.5 3.2 5.1 2 Iris-virginica

6.4 2.7 5.3 1.9 Iris-virginica

6.8 3 5.5 2.1 Iris-virginica

5.7 2.5 5 2 Iris-virginica

5.8 2.8 5.1 2.4 Iris-virginica

6.4 3.2 5.3 2.3 Iris-virginica

6.5 3 5.5 1.8 Iris-virginica

7.7 3.8 6.7 2.2 Iris-virginica

7.7 2.6 6.9 2.3 Iris-virginica

6 2.2 5 1.5 Iris-virginica

6.9 3.2 5.7 2.3 Iris-virginica

5.6 2.8 4.9 2 Iris-virginica

7.7 2.8 6.7 2 Iris-virginica

6.3 2.7 4.9 1.8 Iris-virginica

6.7 3.3 5.7 2.1 Iris-virginica

Algorithm Presented

• Decision trees

– C4.5

• Clustering– K-Means

• Classification– Naïve Bays

References and Resources

• References:– WEKA website: http://www.cs.waikato.ac.nz/~ml/weka/index.html

– WEKA Tutorial:• Machine Learning with WEKA: A presentation demonstrating all graphical user

interfaces (GUI) in Weka.

• A presentation which explains how to use Weka for exploratory data mining.

– WEKA Data Mining Book:• Ian H. Witten and Eibe Frank, Data Mining: Practical Machine Learning

Tools and Techniques (Second Edition)

– WEKA Wiki: http://weka.sourceforge.net/wiki/index.php/Main_Page

– Others:• Jiawei Han and Micheline Kamber, Data Mining: Concepts and

Techniques, 2nd ed.

Demonstration

#22

#23

Drag & Drop

Nodes from

Repository

to Workbench

#24

Configure

Nodes

individually

#25

Configure

Nodes

individually

#26

Connect

Nodes via

Simple

dragging

#27

Connect

Nodes via

Simple

dragging

#28

#29

Execute one

or more nodes

#30

#31

Open individual

views per node

#32

#33

Mark (hilite)

selected points

#34

HiLiting also

spreads to

other views

HiLiting also

spreads to

other views

#35

Many more

views and also

other types

available…