analysis tools for turbulence studies at alcator c …...meryl and stewart robertson urop fund. c....

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1 Analysis Tools for Turbulence Studies at Alcator C-Mod C. Burns, S. Shehata, A. E. White, I. Cziegler, A. Dominguez, D. Ernst, M. Greenwald, D.C. Pace 1 , T. L. Rhodes 2 , J. Terry MIT – Plasma Science and Fusion Center 1 University of California, Irvine 2 University of California, Los Angeles 52nd Annual Meeting Division of Plasma Physics November 8–12, 2010, Chicago, Illinois Supported by the US Department of Energy under DE-FC02- 99ER54512. C. Burns research supported through the MIT Undergraduate Research Opportunities Program (UROP) and Alcator. S. Shehata’s research supported by the Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52 nd APS-DPP Chicago, IL 2010

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Page 1: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Analysis Tools for Turbulence Studies at Alcator C-Mod

C. Burns, S. Shehata, A. E. White, I. Cziegler, A. Dominguez, D. Ernst, M. Greenwald, D.C. Pace1, T. L. Rhodes2, J. Terry

MIT – Plasma Science and Fusion Center 1University of California, Irvine 2University of California, Los Angeles

52nd Annual Meeting Division of Plasma Physics November 8–12, 2010, Chicago, Illinois

Supported by the US Department of Energy under DE-FC02- 99ER54512. C. Burns research supported through the MIT Undergraduate Research Opportunities Program (UROP) and Alcator. S. Shehata’s research supported by the Meryl and Stewart Robertson UROP Fund.

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 2: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Suite of analysis tools written in IDL is being developed to support turbulence studies at C-Mod

•  New GUI for higher-order spectral analysis to study 3-wave coupling • Presently optimized for Gas Puff Imaging (GPI) data • Quick visual analysis of time history, Easy selection of different GPI channels • Choice of bispectrum normalizations • Preliminary use of bicoherence widget shows possible coupling during I-Mode, but not during H-mode and L-Mode. More analysis is needed.

•  New routines for in-between shot calculation of plasma cut-offs, resonances and optical depth

• Utilizes automatic ne and Te FITS routine developed by D. Ernst • Writes save files to user directory for ease in future analysis/plotting • Allows for easy tracking of reflectometer measurement locations in time

• Adaptation of spectral analysis tool, INSPECT, for C-mod • Capability to use identical data analysis routines at DIII-D and C-Mod benefits validation studies and supports joint experiments

•  User-friendly interface for ray-tracing tool, GENRAY • Is under development and will implement in-between shot profile analysis for automated ray-tracing analysis

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 3: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Data from fluctuation diagnostics and turbulence simulations can be analyzed with same analysis tools

Gas Puff Imaging (GPI) Correlation reflectometer http://www.psfc.mit.edu/research/alcator/pubs/APS/APS2009/dominguez_APS2009.pdf

Synthetic diagnostics and gyrokinetic codes

Page 4: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

• User-friendly spectral analysis tools are already available at C-Mod • FFT-based autopower spectrum (W_FLUCT, M. Greenwald) • Autopower spectrum is a linear spectral analysis technique

• Higher order spectral analysis techniques are needed to better characterize the fluctuating signal, study nonlinear processes

• New FFT based bicoherence GUI to study 3-wave coupling has been developed, called GPIW3, and run with IDL gpiw3.pro

• Allows for study of three-wave coupling in Gas Puff Imaging (GPI) data • User-friendly interface has been implemented • Preliminary analysis of H-Mode and I-Mode transitions has begun

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Time-series analysis beyond the power spectrum can be used to study nonlinear processes

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 5: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

• Cross-section of Alcator C-Mod with a representative LSN magnetic equilibrium and the GPI viewing-array

• 2-D GPI array has 9x10 views covering 4 cm x 4cm area. Data from this array of views is used for bicoherence calculations.

• Diagnostic gas puff enters from a nozzle mounted in the low-field-side limiter, ~ 2.5 cm below the height of the magnetic axis.

• GPI measures Dα emission from diagnostic gas puff, Dα~ n0 x f(ne, Te). DEGAS-2 modeling shows typical Dα response to be ~ ne

0.7 x Te0.3.

• Fluctuations in Dα emission are NOT fluctuations in n0

• Dα fluctuations are measured edge, in region of closed flux surfaces, inside separatrix (shown in red) and also in region of open field lines, in scrape off layer (SOL)

Gas Puff Imaging (GPI) Diagnostic at Alcator C-Mod Responds to ne & Te fluctuations in edge and SOL

1µs snapshot of GPI emission showing turbulence structures

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 6: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Biocherence is used to detect phase coupling between three waves

• The bispectrum in frequency space is defined as

• The bicoherence is defined as

• φ(f) is the fourier transform of the time signal at the mode frequency, f.

• The modes obey the three wave coupling rules f1+f2 = f3 or f1-f2 = f3 and the bicoherence picks out the presence of phase coupling where the three modes maintain a phase relationship φ1+φ2 = φ3 or φ1-φ2 = φ3

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 7: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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To illustrate bicoherence, consider test signal that is superposition of four sine waves

• The waves obey the three wave coupling rules for frequency: f1 = 220 kHz and f2 =375 kHz, and f3 = f1 + f2 and f4 = f2 – f1

• The power spectrum cannot distinguish between coupled phase relationships: φ1+φ2 = φ3 and φ4 – φ2 = φ1 And random, or non-coupled, phase relationships: φ1+φ2 ≠ φ3 and φ4 – φ2 ≠ φ1

Page 8: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Bicoherence is high when the four sine waves are phase coupled

• The waves obey the three wave coupling rules for frequency: f1 = 220 kHz and f2 =375 kHz, and f3 = f1 + f2 and f4 = f2 – f1

• In case on left , the waves are given phase relationships: φ1+φ2 = φ3 and φ4 – φ2 = φ1

• In case on right, the waves are given random phase relationships: φ1+φ2 ≠ φ3 and φ4 – φ2 ≠ φ1

0.8

0.6

0.4

0.2

1.0

0.0

0.08

0.06

0.04

0.02

0.1

0.0

Phase coupling No phase coupling

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 9: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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New Bicoherence GUI allows for rapid analysis of 3-Wave Coupling using GPI data

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Version gpiwb.pro

Page 10: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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I-Mode confinement regime characterized by pedestal in temperature, but not density

I-Mode H-Mode High energy confinement, matching H-mode scalings (H98y2=1)

Electron and impurity confinement remain near L-mode levels

Typically ELM-free

High frequency, f~ 250 kHz, weakly coherent magnetic/density fluctuation feature in edge, r/a ~ 0.9

Reflectometer data (A. Dominguez, TP9.00066, Thursday am)

Time (sec)

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 11: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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I-Mode, to H-mode to L-mode transitions are analyzed using bicoherence widget

I-Mode H-Mode L-Mode

Page 12: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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I-Mode, H-mode and L-mode confinement regimes are demarcated by changes in edge fluctuations

I-Mode H-Mode L-Mode

Reflectometer data (A. Dominguez, TP9.00066, Thursday am)

Time (sec)

Power spectrum of edge density fluctuations from reflectometer, r/a ~ 0.9

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 13: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Bicoherence of GPI signals indicates existence of quadratic phase coupling during I-Mode

I-Mode

• Coupling is present in multiple frequency bands

• Strongest coupling is between fluctuations at 200 kHz and low frequency fluctuations near 20-30 kHz

Preliminary analysis shows evidence of nonlinear coupling (b2 > 0.5) during I-Mode

Peak in squared bicoherence, b2 , at the bifrequency (f1,f2) is interpreted as proportion of energy at f1 + f2 that is quadratically phase coupled to the components at f1 and f2

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

GPI [7, 5]: R = 91 cm, z = 3.3 cm below midplane

Page 14: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Bicoherence widget allows for quick visual analysis of data to determine if time history is stationary

Nonstationary time series can result in artifacts or false positives in the bicoherence

H-Mode

Page 15: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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No coupling is seen during H-Mode and L-Mode

H-Mode data with stationary time history is selected using widget

• No coupling is observed in H-Mode or L-Mode

H-Mode: 1100204015, t = 1.12-1.18 sec, GPI [7, 5]: R = 91 cm, z = 3.3 cm below midplane

H-Mode

Page 16: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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In-between shot profile analysis supports study of turbulence with mm-wave diagnostics

• In between shot profile analysis with FITS (D. Ernst) and QUICKFITS tools (Y. Ma) is being used for calculation of plasma cutoffs, resonance and optical depth

• Automatic in between shot profile analysis supports ray-tracing with GENRAY code: used for interpretation of reflectometry, scattering and ECE measurements

• In-between shot profile analysis will also allow for in-between shot power balance analysis and linear stability analysis (TGLF at C-Mod – see Y. Ma TP9.00059, Thursday am)

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 17: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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In-between shot analysis of characteristic frequencies using CHARFREQ IDL routines

Test version /home/whitea/idl/charfreq/shehata

• CHARFREQ routines • In-between shot calculations of plasma cut-offs, resonance and optical depth • Utilizes automatic ne and Te FITS routine developed by D. Ernst

Allow for easy visualization of reflectometer and ECE measurement locations

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

88 GHz reflectometer

2fece

frh

fece

fp

flh

Page 18: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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In-between shot analysis of characteristic frequencies using CHARFREQ IDL routines

• CHARFREQ routines

•  Allow for easy tracking of O-Mode and X-mode reflectometer measurement locations in time

•  Aid in interpretation of edge fluctuations across confinement transitions

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Test version /home/whitea/fits/freqx.pro

Page 19: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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In-between shot analysis of characteristic frequencies using CHARFREQ IDL routines

• CHARFREQ routines

•  Allow for easy tracking of optical depth for ECE in edge

• Optical depth vs. Time at R = 0.88 m

• Density and Te vs. Time at R = 0.88 m

• Aid in interpretation of edge fluctuations across confinement transitions

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Test version /home/whitea/fits/freqx.pro

tau2x = 1

Density (1x1020 m-3)

Te (keV)

Page 20: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Adaptation of IDL-based INSPECT analysis widget allows for advanced spectral analysis at C-Mod

• INSPECT (T. Rhodes UCLA) developed for fluctuation analysis, used at DIII-D

• INSPECT is being adapted for use at Alcator C-Mod

• Beneficial for cross-machine comparisons of turbulence measurements and validation efforts

• Identical analysis can be applied to variety of diagnostics at both DIII-D and C-Mod

• Calculations of • Cross-power • Coherency • Cross-Phase

Test version /home/whitea/inspect/inspect_fast_frcece.pro

Edge fluctuations in I-mode at C-Mod monitored in cross-power spectrum of adjacent fast edge ECE signals from UT Austin 32-channel radiometer

WC-mode

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 21: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Suite of analysis tools written in IDL is being developed to support turbulence studies at C-Mod

•  GPIW3 GUI for higher-order spectral analysis to study 3-wave coupling • Presently optimized for Gas Puff Imaging (GPI) data • Quick visual analysis of time history, Easy selection of different GPI channels • Choice of bispectrum normalizations • Preliminary use of bicoherence widget shows coupling during I-Mode, but not during H-mode and L-Mode. More analysis is needed

•  CHARFREQ routines for in-between shot calculation of plasma cut-offs, resonances and optical depth

• Utilizes automatic ne and Te FITS routine developed by D. Ernst • Writes save files to user directory for ease in future analysis/plotting • Allows for easy tracking of reflectometer measurement locations in time

• Adaptation of INSPECT for C-mod • Capability to use identical data analysis routines at DIII-D and C-Mod benefits validation studies and supports joint experiments

•  User-friendly interface for the GENRAY code • Is under development and will implement in-between shot profile analysis for automated ray-tracing analysis

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

Page 22: Analysis Tools for Turbulence Studies at Alcator C …...Meryl and Stewart Robertson UROP Fund. C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010 2 Suite of analysis tools written

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Future Work

• GPIW3 GUI for higher-order spectral analysis to study 3-wave coupling • Add colorbar to output image, add low power correction option • Output option for .eps file • Add Biphase and Cross-Bispectrum analysis • Add in capability to read data from reflectometer and radiometer • Adapt for use with DIII-D turbulence data

• CHARFREQ routines for in-between shot calculation of plasma cut-offs, resonances and optical depth

• Update to use also automatic ne and Te QUICKFITS routine (Y. Ma) • Allow user to overplot optical depth and cut-offs from two shots • Couple with in-between shot power balance analysis code (e.g. TRANSP or ONETWO), and linear stability analysis with TGLF

• Adaptation of INSPECT for C-mod • Incorporate CHARFREQ into INSPECT at C-Mod • Drop down menu for plotting reference time series is needed

• GENRAY code run on workstations to allow for in-between shot ray-tracing analysis

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

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References

1. Random Data, Bendat and Piersol, (2000)

2. Digital bispectral analysis and its applications to nonlinear wave interactions, Kim and Powers, IEEE Transactions on Plasma Science, (1979)

3. Bicoherence estimation using the direct method. Part 1: Theoretical considerations, Fackrell, McLaughlin and White, Applied Signal Processing, (1995)

4. Bispectral analysis of low- to high-confinement mode transitions in the National Spherical Torus Experiment, A. E. White, S. J. Zweben, M. J. Burin, T. A. Carter, T. S. Hahm, J. A. Krommes, and R. J. Maqueda, Phys. Plasmas 13, 072301 (2006)

5. I-mode: an H-mode energy confinement regime with L-mode particle transport in Alcator C-Mod, Whyte et al., Nuclear Fusion, (2010)

6. Experimental studies of edge turbulence and confinement in Alcator C-Mod, Cziegler, Terry, Hughes, LaBombard, Physics of Plasmas, (2010)

7. High resolution electron cyclotron emission temperature profile and fluctuation diagnostic for Alcator C-Mod, Heard et al., Review of Scientific Instruments, (1999)

8. Upgrade of reflectometry profile and fluctuation measurement in Alcator C- Mod, Lin et al., Review of Scientific Instruments, (1999)

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010

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Copy Requests

C. Burns and S. Shehata, 52nd APS-DPP Chicago, IL 2010