avena genetic resources for quality in human consumption (aveq) startup meeting, clermont ferrand...
TRANSCRIPT
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Federal Centre of Breeding Research on Cultivated Plants
WP10: Project documentation and internet portal
Christoph U.Germeier
WP10: Project documentation and internet portal
Christoph U.Germeier
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Project Management and Coordination through an internet portal
Scientific coordination of the implementation of the action
- Ensure working of logistics.
-> Project web applications will be available for:
- Ensure orthogonality of field and lab work.- Ensure inclusion of results into an online accessible database.- Statistical analysis and generation of knowledge from the data.
- Generate fieldplans according an agreed randomization design:suggested design: augmented randomized block design
- Generate downloadable pdf and Excel sheets for data acquisitionin the field including methodology description
- Downloadable lab protocols including methodology description and sample lists
- Upload or online input of project results including pictures
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Project Platform and Web Application
- The project platform consists of two parts
1. A content management system (Typo 3) holding description of objectives, actions and means involved, list of partners and of sponsors, link to the European Avena Database, link to a test and productive version of the web applicationfile upload and download mechanism
2. A web application (JEE 5, JBoss)for interactive work with the project database (MySQL)and the EADB (Oracle)
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
http://eadb.bafz.de/aveq/1. A content management part
here our institute labels should rotate
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Link to the test application
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - List working collection
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan: Ontology
Working collection:Subset of accessions selected from different sources to be used in a projectEvalution:Plan for characterisation and evaluation of a subset of the working collection in a certain vegetation period
(Field) experiment:Arrangement of treatment - accession combinations (treatments) in a certain randomisation design (experiment = randomization unit)
Fieldplan:Layout of the field design for a certain experiment (matrix of plots arranged in lanes)
Lane:Track of the sowing device, contains a (certain) number of rows.
Plot:Sowing unit in the lane with a certain treatment / accession
Row:Single line of plants
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan: Roles and Workflow
The project group decides on a set of accessions for a certain evaluation
The coordinator initializes the evaluation and its set of accessions in the project database: this ensures orthogonality of accessions evaluated on different sites in one year.
Project partners define online their experiment (name) with their restrictions: number of plots per lane (determined by their field size)and generate their adapted randomized field plan
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Generate Fieldplan
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Web application - Methodology List
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
View Experiments
View Experiment
Scale
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldlist
Fieldlist
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Plot Yield
Input Plot Yield From Scale
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Enter TGW
Enter TGW
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Moisture & Testweight
Input Moisture & Testweight
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Save Fieldlist
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Thanks for your attention
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Scale
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
General View
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
General View
General View
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
List Working Collection
List Working Collection
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
View Fieldplans
View Fieldplans
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldplan
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Fieldlist
Fieldlist
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Generate Fieldplan
Generate Fieldplan
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Generate Fieldplan
Generate Fieldplan
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
Edit Experiment
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Experiment
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
CSV (Excel-File)
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Upload Picture
Upload Pictures
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Upload
Input Data For Upload
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data & Upload Picture
Input Data & Upload Picture
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
List Methodology
List Methodology
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Edit Methodology
Edit Methodology
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Search Project
Search Project
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Search Project
Input Data For Search Project
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Search Project
Input Data For Search Project
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Select Site
Select Site
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Select Site
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Input Data For Select Site
Input Data For Select Site
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Modification + Save For Select Site
Modification & Save For Select Site
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007
Index• Edit Experiment - Page 15-18• Edit Methodology - Page 35• Generate Fieldplan - Page 13-14• List Methodology - Page 34• List Working Collection - Page 9• Search Project - Page 36-38• Select Site - Page 39-42• Upload Pictures - Page 31-33• View Experiment (Fieldlist) - Page 19-29
(Fieldplan) Page 11-12 (CSV) Page 30
• View Fieldplan - Page 10-12
Avena genetic resources for quality in human consumption (AVEQ)Startup Meeting, Clermont Ferrand 2007