background proposed method

1
Lymph Node Gross Tumor Volume Detection and Segmentation via Distance-based Gating using 3D CT/PET Imaging in Radiotherapy Zhuotun Zhu 1,2 , Dakai Jin 1 , Ke Yan 1 , Tsung-Ying Ho 3 , Xianghua Ye 5 , Dazhou Guo 1 , Chun-Hung Chao 4 , Jing Xiao 6 , Alan Yuille 2 , Le Lu 1 1 PAII Inc, 2 Johns Hopkins University, 3 Chang Gung Memorial Hospital 4 National Tsing Hua University, 5 The First Affiliated Hospital Zhejiang University, 6 Ping An Technology We are the first to address the clinically critical task of detecting, identifying and characterizing GTV_LNs. v Size and shape is in a large variance v Radiotherapy is on the non-contrast CT (RTCT) v GTV_LNs have more distributions in smaller sizes than enlarged LNs In order to do this, we collected 141 patients with esophageal cancer (underwent radiotherapy treatment), in average 4 ~ 5 GTV_LNs for each patient, 651 GTV_LNs in total, all of them are on non-contrast CT with the labelled GTV_LN volume mask. Challenges Background Results Visualization Framework Methods single-net multi-net BG[21] multi- branch BG (Ours) multi- branch SG (Ours) MULAN [17] CT ü ü EF ü ü ü ü ü mRecall 0.66 0.73 0.75 0.76 0.78 0.71 0.73 Recall max 0.76 0.82 0.83 0.85 0.84 0.76 0.78 mRFOC 0.60 0.68 0.70 0.68 0.72 0.63 0.71 FROC @4 0.55 0.67 0.67 0.67 0.73 0.63 0.72 FROC @6 0.68 0.71 0.74 0.72 0.74 0.64 0.72 Table 1. Quantitative results of our proposed methods with the comparison to other setups and the previous state-of-the-art. Proposed Method Figure 3. Top row (a-d): examples of the GTV_LN (red arrow) with varying size and appearance at scatteredly distributed locations. Bottom row (e-h): (e) A coronal view of RTCT for an esophageal cancer patient. (f) The manual annotated GTV_LN mask. (g) The tumor distance transformation map overlaid on RTCT, where the primary tumor is indicated by red in the center and the white dash line shows an example of the binary tumor proximal and distal region division. (h) PET imaging shows several FPs with high signals (yellow arrows). Two FN GTV_LN are indicated by green arrow where PET has even no signals on a GTV_LN . 128 256 512 256+512 64 64 128+256 64+128 1 ! "#$% ! &'() 256+512 128+256 64+128 64 1 Conv 1x1x1 stride 1 Crop and Concat Double Conv 3x3x3 stride 1 pad 1, Upsample 2x2x2 Maxpool 2x2x2, Double Conv 3x3x3 stride 1 pad 1 Double Conv 3x3x3 stride 1 pad 1 Elementwise Product Cross-Entropy Loss Input volume X Output label Y Figure 5. Four qualitative examples of the detection results using different methods. Red color represents the ground-truth GTV_LN overlaid on the RTCT images; Green color indicates the predicted segmentation masks. Figure 4. The overall framework of our proposed multi-branch GTV_LN detection and segmentation method. The light green part shows the encoder path, while the light yellow and light blue parts show the two decoders, respectively. The number of channels is denoted either on the top or the bottom of the box. Dataset tumor lymph nodes high radiation dose region LN in Oncology initial esophageal cancer diagnosis determine of cancer staging and treatment plan Targets contouring & RT dose calculation involve lymph node Figure 1. The workflow of esophagus cancer treatment, in which the second and third steps are involved with the lymph nodes. Figure 2. In radiotherapy, the radiation covers the primary tumor and lymph node gross tumor volume (GTV_LN).

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Lymph Node Gross Tumor Volume Detection and Segmentation via Distance-based Gating using 3D CT/PET Imaging in Radiotherapy

Zhuotun Zhu1,2, Dakai Jin1, Ke Yan1, Tsung-Ying Ho3, Xianghua Ye5, Dazhou Guo1, Chun-Hung Chao4, Jing Xiao6, Alan Yuille2, Le Lu1

1 PAII Inc, 2 Johns Hopkins University, 3 Chang Gung Memorial Hospital4 National Tsing Hua University, 5 The First Affiliated Hospital Zhejiang University, 6 Ping An Technology

We are the first to address the clinically critical task of detecting, identifying and characterizing GTV_LNs. v Size and shape is in a large variancev Radiotherapy is on the non-contrast CT (RTCT)v GTV_LNs have more distributions in smaller sizes than enlarged LNs

In order to do this, we collected 141 patients with esophageal cancer (underwent radiotherapy treatment), in average 4 ~ 5 GTV_LNs for each patient, 651 GTV_LNs in total, all of them are on non-contrast CT with the labelled GTV_LN volume mask.

Challenges

Background

Results Visualization

Framework

Methods single-net multi-net BG[21]

multi-branch

BG (Ours)

multi-branch

SG (Ours)

MULAN [17]

CT ü ü

EF ü ü ü ü ü

mRecall 0.66 0.73 0.75 0.76 0.78 0.71 0.73

Recallmax 0.76 0.82 0.83 0.85 0.84 0.76 0.78

mRFOC 0.60 0.68 0.70 0.68 0.72 0.63 0.71

FROC@4 0.55 0.67 0.67 0.67 0.73 0.63 0.72

FROC@6 0.68 0.71 0.74 0.72 0.74 0.64 0.72

Table 1. Quantitative results of our proposed methods with the comparison to

other setups and the previous state-of-the-art.

Proposed Method

Figure 3. Top row (a-d): examples of the GTV_LN (red arrow) with varying size and

appearance at scatteredly distributed locations. Bottom row (e-h): (e) A coronal view

of RTCT for an esophageal cancer patient. (f) The manual annotated GTV_LN

mask. (g) The tumor distance transformation map overlaid on RTCT, where the

primary tumor is indicated by red in the center and the white dash line shows an

example of the binary tumor proximal and distal region division. (h) PET imaging

shows several FPs with high signals (yellow arrows). Two FN GTV_LN are

indicated by green arrow where PET has even no signals on a GTV_LN .

128 256 512

256+512

64

64

128+256

64+128 1

!"#$%

!&'()

256+512

128+256

64+128

64 1Conv 1x1x1 stride 1Crop and ConcatDouble Conv 3x3x3 stride 1 pad 1, Upsample 2x2x2Maxpool 2x2x2, Double Conv 3x3x3 stride 1 pad 1

Double Conv 3x3x3 stride 1 pad 1Elementwise Product

Cross-Entropy Loss

Input volume XOutput label Y

Figure 5. Four qualitative examples of the detection results using different methods. Red color represents the ground-truth GTV_LN overlaid on the

RTCT images; Green color indicates the predicted segmentation masks.

Figure 4. The overall framework of our proposed multi-branch GTV_LN detection and segmentation method. The light green part shows

the encoder path, while the light yellow and light blue parts show the two decoders, respectively. The number of channels is denoted

either on the top or the bottom of the box.

Dataset

tumor lymph nodes high radiation dose region

LN in Oncology

initial esophageal

cancer diagnosis

determine of cancer staging

and treatment plan

Targets contouring &

RT dose calculationinvolve lymph

node

Figure 1. The workflow of esophagus cancer treatment, in which the second and third steps are

involved with the lymph nodes.

Figure 2. In radiotherapy, the radiation covers the primary tumor and lymph node gross tumor

volume (GTV_LN).