bioinformatic tools in pheromone technology
TRANSCRIPT
ROLE OF BIOINFORMATICS TOOLS
IN PHEROMONE TECHNOLOGY
LS 1154
MTHILAKAR
4rsquoth MSc LIFE SCIENCES
BHARATHIDASAN UNIVERSITY
TIRUCHIRAPALLI
BIOINFORMATICS - INTRODUCTIONBIOLOGY + INFORMATICS = BIOINFORMATICS
Deals with Data of Biology with the aid of computers and theirprograms
The programs are specially designed for the purpose of Biologicaldata analysis
Biomolecules like Protein Nucleic acids are predominantly subjectedto analyses
462015 2LS1154 - MTHILAKAR
BIOINFORMATICS TOOLS
Tools in the sense of Software packages
Software packages are written as coding and are prepared asexecutable files
Already existing software are available through online
Programs like C C++ PERL Python etc are commonly used tocreate these software packages
462015 3LS1154 - MTHILAKAR
ABOUT UNIPROT
The mission of UniProt is to provide the scientific community with acomprehensive high quality and freely accessible resource of protein sequenceand functional information
UniProt is comprised of four components each optimized for different uses
1) The UniProt Knowledgebase (UniProtKB) is the central access point forextensive curated protein information including function classification andcross-reference
It consists of two sections
UniProtKBSwiss-Prot which is manually annotated and is reviewed and
UniProtKBTrEMBL which is automatically annotated and is not reviewed
2) The UniProt Reference Clusters (UniRef) databases provide clustered setsof sequences from the UniProtKB and selected UniProt Archive records toobtain complete coverage of sequence space at several resolutions while hidingredundant sequences
3) The UniProt Archive (UniParc) is a comprehensive repository used to keeptrack of sequences and their identifiers
4) The UniProt Metagenomic and Environmental Sequences (UniMES) databaseis a repository specifically developed for metagenomic and environmental data
462015 4LS1154 - MTHILAKAR
WHY IS UNIPROTKB COMPOSED OF 2 SECTIONSUNIPROTKBSWISS-
PROT AND UNIPROTKBTREMBL
UniProtKBSwiss-Prot
Created in 1986
Manually annotated andnon-redundant proteinsequence database
Brings together theexperimental resultscomputed features andscientific conclusions
UniProtKBTrEMBL
Created in 1996
Because of the increased dataflowwhich is resulting from HumanGenome project
Contains high quality computationallyanalyzed data and are automaticannotation with classification
Unreviewed entries kept separatedform Swiss-Prot
462015 5LS1154 - MTHILAKAR
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
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462015 LS1154 - MTHILAKAR 34
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462015 LS1154 - MTHILAKAR 35
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462015 LS1154 - MTHILAKAR 36
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KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
BIOINFORMATICS - INTRODUCTIONBIOLOGY + INFORMATICS = BIOINFORMATICS
Deals with Data of Biology with the aid of computers and theirprograms
The programs are specially designed for the purpose of Biologicaldata analysis
Biomolecules like Protein Nucleic acids are predominantly subjectedto analyses
462015 2LS1154 - MTHILAKAR
BIOINFORMATICS TOOLS
Tools in the sense of Software packages
Software packages are written as coding and are prepared asexecutable files
Already existing software are available through online
Programs like C C++ PERL Python etc are commonly used tocreate these software packages
462015 3LS1154 - MTHILAKAR
ABOUT UNIPROT
The mission of UniProt is to provide the scientific community with acomprehensive high quality and freely accessible resource of protein sequenceand functional information
UniProt is comprised of four components each optimized for different uses
1) The UniProt Knowledgebase (UniProtKB) is the central access point forextensive curated protein information including function classification andcross-reference
It consists of two sections
UniProtKBSwiss-Prot which is manually annotated and is reviewed and
UniProtKBTrEMBL which is automatically annotated and is not reviewed
2) The UniProt Reference Clusters (UniRef) databases provide clustered setsof sequences from the UniProtKB and selected UniProt Archive records toobtain complete coverage of sequence space at several resolutions while hidingredundant sequences
3) The UniProt Archive (UniParc) is a comprehensive repository used to keeptrack of sequences and their identifiers
4) The UniProt Metagenomic and Environmental Sequences (UniMES) databaseis a repository specifically developed for metagenomic and environmental data
462015 4LS1154 - MTHILAKAR
WHY IS UNIPROTKB COMPOSED OF 2 SECTIONSUNIPROTKBSWISS-
PROT AND UNIPROTKBTREMBL
UniProtKBSwiss-Prot
Created in 1986
Manually annotated andnon-redundant proteinsequence database
Brings together theexperimental resultscomputed features andscientific conclusions
UniProtKBTrEMBL
Created in 1996
Because of the increased dataflowwhich is resulting from HumanGenome project
Contains high quality computationallyanalyzed data and are automaticannotation with classification
Unreviewed entries kept separatedform Swiss-Prot
462015 5LS1154 - MTHILAKAR
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
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462015 LS1154 - MTHILAKAR 36
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KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
BIOINFORMATICS TOOLS
Tools in the sense of Software packages
Software packages are written as coding and are prepared asexecutable files
Already existing software are available through online
Programs like C C++ PERL Python etc are commonly used tocreate these software packages
462015 3LS1154 - MTHILAKAR
ABOUT UNIPROT
The mission of UniProt is to provide the scientific community with acomprehensive high quality and freely accessible resource of protein sequenceand functional information
UniProt is comprised of four components each optimized for different uses
1) The UniProt Knowledgebase (UniProtKB) is the central access point forextensive curated protein information including function classification andcross-reference
It consists of two sections
UniProtKBSwiss-Prot which is manually annotated and is reviewed and
UniProtKBTrEMBL which is automatically annotated and is not reviewed
2) The UniProt Reference Clusters (UniRef) databases provide clustered setsof sequences from the UniProtKB and selected UniProt Archive records toobtain complete coverage of sequence space at several resolutions while hidingredundant sequences
3) The UniProt Archive (UniParc) is a comprehensive repository used to keeptrack of sequences and their identifiers
4) The UniProt Metagenomic and Environmental Sequences (UniMES) databaseis a repository specifically developed for metagenomic and environmental data
462015 4LS1154 - MTHILAKAR
WHY IS UNIPROTKB COMPOSED OF 2 SECTIONSUNIPROTKBSWISS-
PROT AND UNIPROTKBTREMBL
UniProtKBSwiss-Prot
Created in 1986
Manually annotated andnon-redundant proteinsequence database
Brings together theexperimental resultscomputed features andscientific conclusions
UniProtKBTrEMBL
Created in 1996
Because of the increased dataflowwhich is resulting from HumanGenome project
Contains high quality computationallyanalyzed data and are automaticannotation with classification
Unreviewed entries kept separatedform Swiss-Prot
462015 5LS1154 - MTHILAKAR
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
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462015 LS1154 - MTHILAKAR 34
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462015 LS1154 - MTHILAKAR 35
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462015 LS1154 - MTHILAKAR 36
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KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
ABOUT UNIPROT
The mission of UniProt is to provide the scientific community with acomprehensive high quality and freely accessible resource of protein sequenceand functional information
UniProt is comprised of four components each optimized for different uses
1) The UniProt Knowledgebase (UniProtKB) is the central access point forextensive curated protein information including function classification andcross-reference
It consists of two sections
UniProtKBSwiss-Prot which is manually annotated and is reviewed and
UniProtKBTrEMBL which is automatically annotated and is not reviewed
2) The UniProt Reference Clusters (UniRef) databases provide clustered setsof sequences from the UniProtKB and selected UniProt Archive records toobtain complete coverage of sequence space at several resolutions while hidingredundant sequences
3) The UniProt Archive (UniParc) is a comprehensive repository used to keeptrack of sequences and their identifiers
4) The UniProt Metagenomic and Environmental Sequences (UniMES) databaseis a repository specifically developed for metagenomic and environmental data
462015 4LS1154 - MTHILAKAR
WHY IS UNIPROTKB COMPOSED OF 2 SECTIONSUNIPROTKBSWISS-
PROT AND UNIPROTKBTREMBL
UniProtKBSwiss-Prot
Created in 1986
Manually annotated andnon-redundant proteinsequence database
Brings together theexperimental resultscomputed features andscientific conclusions
UniProtKBTrEMBL
Created in 1996
Because of the increased dataflowwhich is resulting from HumanGenome project
Contains high quality computationallyanalyzed data and are automaticannotation with classification
Unreviewed entries kept separatedform Swiss-Prot
462015 5LS1154 - MTHILAKAR
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
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462015 LS1154 - MTHILAKAR 34
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QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
WHY IS UNIPROTKB COMPOSED OF 2 SECTIONSUNIPROTKBSWISS-
PROT AND UNIPROTKBTREMBL
UniProtKBSwiss-Prot
Created in 1986
Manually annotated andnon-redundant proteinsequence database
Brings together theexperimental resultscomputed features andscientific conclusions
UniProtKBTrEMBL
Created in 1996
Because of the increased dataflowwhich is resulting from HumanGenome project
Contains high quality computationallyanalyzed data and are automaticannotation with classification
Unreviewed entries kept separatedform Swiss-Prot
462015 5LS1154 - MTHILAKAR
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
UNIPROT ndash HOME PAGE httpwwwuniprotorg
462015 6LS1154 - MTHILAKAR
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
SEARCHING ON UNIPROT (ADVANCED)
462015 7LS1154 - MTHILAKAR
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
RESULT PAGE -COMPLETE
462015 8LS1154 - MTHILAKAR
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
RESULT PAGE ndash SELECTED ORGANISM MOUSE
462015 9LS1154 - MTHILAKAR
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
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SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
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SE
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EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
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SE
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S
UB
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N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
RESULTS ARE DOWNLOADABLE
462015 10LS1154 - MTHILAKAR
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
ALIGNMENT
462015 11LS1154 - MTHILAKAR
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
ALIGNMENT - RESULT
462015 12LS1154 - MTHILAKAR
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
ALIGNMENT - TREE RESULT
462015 13LS1154 - MTHILAKAR
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
BLAST
462015 14LS1154 - MTHILAKAR
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
BLAST PAGE IN UNIPROT
462015 15LS1154 - MTHILAKAR
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
BLAST RESULTS
BLAST RESULTS
462015 16LS1154 - MTHILAKAR
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
DDBJ ndash DNA DATA BANK OF JAPAN
DDBJ provides freely available nucleotide sequence data and supercomputer system (for support in the research activities in Life sciences)
DDBJ is accessing from NIG-J with endorsement of Japanese Ministry ofEducation Culture Sports Science and Technology
DNA database Advisory committee (from outside of NIG) and INSDC aresupports and reviews the DDBJ activities
Major activities of DDBJ Center are as follows
Construction and operation of INSDC rules and regulations
Providing nucleotide and amino acid sequence data that are related topatent applications
Management and operation of the NIG Supercomputer System
Providing services to search and to analyze biological data
Training course and publication
462015 18LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 19
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
DDBJ HOME PAGE AT httpddbjnigacjp
462015 20LS1154 - MTHILAKAR
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
COLLABORATIONSDDBJ is the member of INSDC (International Nucleotide Sequence DatabaseCollaboration)
DDBJ exchanges their data with EMBL at European Bioinformatics institute andwith Genbank at National center for Biotechnology Information on Daily basis
Thus three databanks contains same data at any time
462015 21LS1154 - MTHILAKAR
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 22
EMBL HOME PAGE AT httpwwwemblorg
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 23
NCBI HOME PAGE AT httpwwwncbinlmnihgov
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 24
DDBJ SEARCH AND ANALYSIS PAGE AT httpwwwddbjnigacjpsearches-ehtml
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 25
DDBJ ndash ARSA SEARCH
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 26
DDBJ ndash GETENTRY SEARCH
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 27
DDBJ ndash GETENTRY SEARCH ndash RESULT PAGE FOR Y17566
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
DDBJ ndash DATA SUBMISSION
462015 28LS1154 - MTHILAKAR
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 29LS1154 - MTHILAKAR
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
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462015 LS1154 - MTHILAKAR 34
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462015 LS1154 - MTHILAKAR 35
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N
462015 LS1154 - MTHILAKAR 36
DD
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SE
QU
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S
UB
MIS
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N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 30LS1154 - MTHILAKAR
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
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UB
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N
462015 LS1154 - MTHILAKAR 35
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N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 31LS1154 - MTHILAKAR
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
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EN
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UB
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SIO
N
462015 LS1154 - MTHILAKAR 35
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N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 32LS1154 - MTHILAKAR
DDBJ SEQUENCE SUBMISSION PAGE httpddbjnigacjpsubmission
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
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QU
EN
CE
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UB
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N
462015 LS1154 - MTHILAKAR 35
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N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 33
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
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N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 34
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 35
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 LS1154 - MTHILAKAR 36
DD
BJ
SE
QU
EN
CE
S
UB
MIS
SIO
N
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
KEGG - INTRODUCTION
KEGG (Kyoto Encyclopedia of Genes and Genomes)
It is a database resource that integrates Genomic Chemical and Systemicfunctional informations
Manually creates a knowledge base for Bio-systemic function by capturing andorganizing Experimental knowledge in Computable forms
Such as KEGG pathway maps BRITE functional hierarchies and KEGG modules
It is a computer representation of Biological system consisting of MolecularBuilding blocks of Genes and Proteins (Genomic information) and Chemicalsubstances (Chemical information) that are integrated with the knowledge onMolecular Wiring Diagrams of interactions Reactions and Relation networks
It also contains the Disease and Drug information to the biological system
KEGG is widely used as reference knowledge base for integration of Largerdatasets generated by Genome sequencing and other High throughputexperiments
KEGG is developed by Kanehisa Laboratories (Minoru Kanehisa)462015 LS1154 - MTHILAKAR 38
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 39LS1154 - MTHILAKAR
KEGG HOME PAGE AT httpwwwgenomejpkegg
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 40LS1154 - MTHILAKAR
SEARCHING IN KEGG
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 41LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 42LS1154 - MTHILAKAR
SEARCH RESULTS IN KEGG
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 43LS1154 - MTHILAKAR
KEGG SIGNALING PATHWAY IN YEAST
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
PYMOLOpen source User sponsored Molecular visualization systemcreated by Warren Lyfor DeLano and Commercialization initialized byDeLano Scientific LLC (A private software company)
It is currently commercialized by Schroumldinger Inc
PyMOL can produce High quality 3D images of small molecules andbiological macromolecules such as proteins
According to the original author of PyMOL almost frac14 of images ofproteins are published as identified
Accessible at httppymolorg
462015 LS1154 - MTHILAKAR 45
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
PYMOL HOME PAGE AT httppymolorg
462015 46LS1154 - MTHILAKAR
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
PYMOL SOFTWARE INSTALLED ON THIS WINDOWS
462015 47LS1154 - MTHILAKAR
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
462015 48LS1154 - MTHILAKAR
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
REFERENCEShttpwwwuniprotorg
httpwwwinsdcorg
httpwwwddbjnigacjp
httpwwwgenomejpkeggkegg1html
httpspymolorg
httpwwwncbinlmnihgov
httpwwwemblorg
httpenwikipediaorgwikiDNA_Data_Bank_of_Japan
KEGG databases for pathway prediction by Susumu Goto Presented at COSBi Seminar 2010
Introduction to KEGG by Susumu Goto Presented at Systems biology and Osmics cascade 2008
462015 LS1154 - MTHILAKAR 50
