Bioinformatics and Comparative Genome Analyses Course

May 7 - 19, 2012

Stazione Zoologica Anton Dohrn, Naples, Italy

Course web page: http://www.pasteur.fr/~tekaia/BCGA2012.html

Organizers:

• Giuseppe D'Onofrio, Stazione Zoologica Anton Dohrn, Naples

• Fredj Tekaia, Institut Pasteur Paris, France.

EMBO Bioinformatics and Comparative Genome Analyses Course

Stazione Zoologica Anton Dohrn, Naples, Italy, May 7 - 19, 2012

EMBO Bioinformatics and Comparative Genome Analyses Course

Stazione Zoologica Anton Dohrn, Naples, Italy, May 7 - 19, 2012

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With support from:

Thanks to the President of the Stazione Zoologica Anton Dohrn:

Professor Enrico Alleva

For hosting and supporting this course.

Acknowledgements

We are grateful to all colleagues and administrative staff who devoted much of their time to efficiently help in setting this course.

They are all volunteers.

Acknowledgements

EMBO:

Anne-Marie Glynn

Lynne Turnbull

Sharon Witzke

• From the Institut Pasteur Paris (http://www.pasteur.fr)

-Gestion du BudgetMarie-Pierre Landete, Maryse Fichepain;

-SecretariatNirina Andriakoto;

-Service MissionsMurielle Dupuis;

Service PhotosJean-François Charles;….

• Edouard Yeramian, Institut Pasteur ParisFor his help in the evaluation of the applications

• Tru Huynh, Institut Pasteur Paris

• Martin Krzywinski, Genome Sciences Centre Vancouver - Canada

• Cedric Notredame, Centre de Regulacio Genomica, Barcelona - Spain

• Inna Dubchak, Genomic Division Lawrence Berkeley National Laboratory Berkeley, CA - USA

• Kalliopi Trachana, Structural and Computational Biology - EMBL-Heidelberg - Germany

• Gary Benson, Boston University, Boston - USA

• Claudia Angelini, Consiglio Nazionale delle Ricerche, Naples - Italy

Invited colleagues

• Roberto Tagliaferri, Dept. Maths and Informatics, Universita di Salerno, Italy

• Giuseppe D'Onofrio, Stazione Zoologica Anton Dohrn, Naples - Italy

• Remo Sanges, Stazione Zoologica Anton Dohrn, Naples - Italy

• Javier de Las Rivas, Bioinformatics & Functional Genomics, Salamanca - Spain

• Bernard Dujon, Institut Pasteur, Paris - France

Computer Room

Sitting Plan EMBO2012Students are assumed to complement each others in terms of

backgrounds

Santiago Castillo

Mexico, Biol Jinjie Duan, China, Bioinf

Beck Yv onne Germany, Math

Laura Kamenetzky Argentina, Bioinf

Faouzia Ajili Tunisia, Biol

Anna Muszewska Poland, Bioinf

Ana Sencilo, Lithuania, Biol

Tainá Raiol Brasil, Biol

Martin Dienstbier, Czech Republic, Biol

Elisa Pellegrino Italy, Biol

Lusy Handoko Indonesia, Biol

Jean-François Flot France, Biol

Dennis Lal Germany, Biol

Rute Fonseca Portugal, Bioinf

Libertini Emanuele Italy, Bioinf

Dimitris Polychronopoulos Greece, Bioinf

Rawat Vimal India, Bioinf

Arnau Sebé-Pedrós, Spain, Biol

Uciel Pablo Chorostecki Argentina, Bioinf

Emanuel Weitschek Italy, CompS

Practical matters

• You should have your badge always visible;

Goals of the course

• Create class atmosphere

• Generate interactivity

• You make the course

• Learn new ideas/Exchange ideas

• Establish new collaborations

Lectures / Practical sessions

• Preparation is key

• Ask questions

• Make comments

• Concentration/application

• Develop critical analysis

We expect to have a lively and friendly course

Lectures / Practical sessions

• The 8 Gb USB pen drive should be renamed EMBO2012 and used for

Bibliographic documents + course materials +…

Oral Presentations

• 15 minutes each including discussion:

•SelfIntroduction:

-Your work environment (University, Lab,…

-Your background and projects;

Useful for further discussion with others

•Your presentation

Personal• On time

• Full time presence

• Respectful of rules

• Solidarity

(mix backgrounds: help each others)

• No cell phones

• Ethical use of Internet

• No e-mail during the course.

Personal

• Keep the place clean ;

• No water-coffee-tea cups in the computer room;

Saturday May 19th

Course Evaluation

Course evaluation• EMBO on-line evaluation Questionnaire to be completed carefully (Friday evening - Saturday morning):

http://www.conference-service.com/pc12-08/welcome.cgi

(Questionnaire is CONFIDENTIAL - evaluation is personal, no group evaluation)

You need your user_Id & passwd

Course evaluationLocal/short paper version

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• During the last session (9-12 am, May 19th): you will present your personal course evaluation in 1/2 slides :

Indicate what you learned, your overall impression on the 2 weeks course.

Your self evaluation in terms of active participation to the course.

Course evaluation

9-12 am, Saturday, May 19th

First name Family name

e-mail adress:

PHOTO

Institution full adress

EMBO Bioinformatics and Comparative Genome AnalysisStazione Zoologica Anton Dohrn, Naples, May 7- 19, 2012

Copy of your Self Introduction First slide

Complete and save this file as: Familyname_EMBO2012_Eval.ppt

Indicate what you learned, your overall impression of the 2 weeks course,Your self-evaluation in terms of active participation during the course,…

EMBO Bioinformatics and Comparative Genome AnalysisStazione Zoologica Anton Dohrn, Naples, May 7- 19, 2012

• The overall analysis of the paper questionnaire results will be presented.

• Presence is mandatory;

• Participation certificates will be distributed.

• Group picture will be distributed.

Course evaluation

9-12 am, Saturday, May 19th

Pictures sharing

• We would like you to share your pictures with others.

• Some will be added to the course web page.

Have a nice stay in Naples

Thanks

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Questions?