brenda tutorial · (cf. brenda tutorial - enzyme search -) you can choose the organism of interest...
TRANSCRIPT
![Page 1: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/1.jpg)
BRENDA Tutorial…how to search for organisms
TaxTree
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The BRENDA TaxTree Explorer is based on the Taxonomy Database of the NCBI.
(http://www.ncbi.nlm.nih.gov/taxonomy)
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You can either browse or search the TaxTree.
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You can run a search byentering the organism name, the synonym, or the scientificname.
![Page 5: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/5.jpg)
On the result page thesystematic classification ofthe searched organisms isdisplayed in the Tree View.
![Page 6: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/6.jpg)
Detailed information on theknown protein sequences ofthis organism
![Page 7: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/7.jpg)
Detailed information on theknown protein sequences ofthis organism
![Page 8: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/8.jpg)
A direct link to the NCBI
Taxonomy Database
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A list of EC numbers
with organism-specific
enzyme data in
BRENDA, directly linked
to the Enzyme Summary
Page
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Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)
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Enzyme Summary Page (cf. BRENDA Tutorial - Enzyme Search -)
You can choose the
organism of interest and
submit an organism-
specific view of the
enzyme data.
![Page 12: BRENDA Tutorial · (cf. BRENDA Tutorial - Enzyme Search -) You can choose the organism of interest and submit an organism-specific view of the enzyme data. The synonyms of the organism](https://reader035.vdocument.in/reader035/viewer/2022071217/604a4e29839d5b1624465dfd/html5/thumbnails/12.jpg)
The synonyms of
the organism are
shown here.
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You can use thebrowse function tofind an organism.
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You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.
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You can navigate alongthe hierarchical tree byclicking on the +-icon tofind the desiredorganism.
Similar to the results of theTaxTree „Search mode“ you canfind the details about the proteinsequences, the link to the NCBI Taxonomy, the synonyms, and tothe organism-specific enzyme datain BRENDA.