cancer discovery-2014-horwitz-730-43

15
730 | CANCER DISCOVERYJUNE 2014 www.aacrjournals.org RESEARCH ARTICLE Human and Mouse VEGFA -Amplified Hepatocellular Carcinomas Are Highly Sensitive to Sorafenib Treatment Elad Horwitz 1 , Ilan Stein 1,3 , Mariacarla Andreozzi 5 , Julia Nemeth 6 , Avivit Shoham 1 , Orit Pappo 3 , Nora Schweitzer 12 , Luigi Tornillo 5 , Naama Kanarek 1 , Luca Quagliata 5 , Farid Zreik 3 , Rinnat M. Porat 3 , Rutie Finkelstein 3 , Hendrik Reuter 7 , Ronald Koschny 11 , Tom Ganten 11 , Carolin Mogler 9 , Oren Shibolet 4 , Jochen Hess 6,8,10 , Kai Breuhahn 9 , Myriam Grunewald 2 , Peter Schirmacher 9 , Arndt Vogel 12 , Luigi Terracciano 5 , Peter Angel 6 , Yinon Ben-Neriah 1 , and Eli Pikarsky 1,3 ABSTRACT Death rates from hepatocellular carcinoma (HCC) are steadily increasing, yet thera- peutic options for advanced HCC are limited. We identify a subset of mouse and human HCCs harboring VEGFA genomic amplification, displaying distinct biologic characteristics. Unlike common tumor amplifications, this one seems to work via heterotypic paracrine interactions; stromal VEGF receptors (VEGFR), responding to tumor VEGF-A, produce hepatocyte growth factor (HGF) that reciprocally affects tumor cells. VEGF-A inhibition results in HGF downregulation and reduced proliferation, specifically in amplicon-positive mouse HCCs. Sorafenib—the first-line drug in advanced HCC—targets multiple kinases, including VEGFRs, but has only an overall mild beneficial effect. We found that VEGFA amplification specifies mouse and human HCCs that are distinctly sensi- tive to sorafenib. FISH analysis of a retrospective patient cohort showed markedly improved survival of sorafenib-treated patients with VEGFA-amplified HCCs, suggesting that VEGFA amplification is a potential biomarker for HCC response to VEGF-A–blocking drugs. SIGNIFICANCE: Using a mouse model of inflammation-driven cancer, we identified a subclass of HCC carrying VEGFA amplification, which is particularly sensitive to VEGF-A inhibition. We found that a simi- lar amplification in human HCC identifies patients who favorably responded to sorafenib—the first-line treatment of advanced HCC—which has an overall moderate therapeutic efficacy. Cancer Discov; 4(6); 730–43. ©2014 AACR. See related commentary by Luo and Feng, p. 640. Authors’ Affiliations: 1 The Lautenberg Center for Immunology; 2 Depart- ment of Developmental Biology and Cancer Research, IMRIC, Hadassah Medical School, Hebrew University; 3 Department of Pathology, Hadassah- Hebrew University Medical Center, Jerusalem; 4 Liver Unit, Tel Aviv Sour- asky Medical Center, Tel Aviv, Israel; 5 Institute of Pathology, University Hospital Basel, Basel, Switzerland; 6 Division of Signal Transduction and Growth Control (A100), 7 Division of Molecular Genetics (B060), and 8 Jun- ior Group Molecular Mechanisms of Head and Neck Tumors (A102), Ger- man Cancer Research Center (DKFZ), DKFZ-ZMBH Alliance; 9 Institute of Pathology, University Hospital Heidelberg; Departments of 10 Otolaryngol- ogy, Head and Neck Surgery and 11 Internal Medicine, University Hospital Heidelberg, Heidelberg; and 12 Department of Gastroenterology, Hepatology and Endocrinology, Hannover Medical School, Hannover, Germany Note: Supplementary data for this article are available at Cancer Discovery Online (http://cancerdiscovery.aacrjournals.org/). Corresponding Authors: Eli Pikarsky, The Lautenberg Center for Immunol- ogy, IMRIC, Hadassah Medical School, Hebrew University, Kiryat Hadas- sah, P.O.B. 12272, Jerusalem 91120, Israel. Phone: 972-2-675-8202; Fax: 972-2-642-6268; E-mail: [email protected]; and Yinon Ben-Neriah, The Lautenberg Center for Immunology, IMRIC, Hadassah Medical School, Hebrew University, Kiryat Hadassah, P.O.B. 12272, Jerusalem 91120, Israel. Phone: 972-2-675-8718; E-mail: [email protected] doi: 10.1158/2159-8290.CD-13-0782 ©2014 American Association for Cancer Research. on March 27, 2016. © 2014 American Association for Cancer Research. cancerdiscovery.aacrjournals.org Downloaded from Published OnlineFirst March 31, 2014; DOI: 10.1158/2159-8290.CD-13-0782

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Page 1: Cancer Discovery-2014-Horwitz-730-43

730 | CANCER DISCOVERY�JUNE 2014 www.aacrjournals.org

RESEARCH ARTICLE

Human and Mouse VEGFA -Amplifi ed Hepatocellular Carcinomas Are Highly Sensitive to Sorafenib Treatment Elad Horwitz 1 , Ilan Stein 1 , 3 , Mariacarla Andreozzi 5 , Julia Nemeth 6 , Avivit Shoham 1 , Orit Pappo 3 , Nora Schweitzer 12 , Luigi Tornillo 5 , Naama Kanarek 1 , Luca Quagliata 5 , Farid Zreik 3 , Rinnat M. Porat 3 , Rutie Finkelstein 3 , Hendrik Reuter 7 , Ronald Koschny 11 , Tom Ganten 11 , Carolin Mogler 9 , Oren Shibolet 4 , Jochen Hess 6 , 8 , 10 , Kai Breuhahn 9 , Myriam Grunewald 2 , Peter Schirmacher 9 , Arndt Vogel 12 , Luigi Terracciano 5 , Peter Angel 6 , Yinon Ben-Neriah 1 , and Eli Pikarsky 1 , 3

ABSTRACT Death rates from hepatocellular carcinoma (HCC) are steadily increasing, yet thera-

peutic options for advanced HCC are limited. We identify a subset of mouse and

human HCCs harboring VEGFA genomic amplifi cation, displaying distinct biologic characteristics.

Unlike common tumor amplifi cations, this one seems to work via heterotypic paracrine interactions;

stromal VEGF receptors (VEGFR), responding to tumor VEGF-A, produce hepatocyte growth factor

(HGF) that reciprocally affects tumor cells. VEGF-A inhibition results in HGF downregulation and

reduced proliferation, specifi cally in amplicon-positive mouse HCCs. Sorafenib—the fi rst-line drug

in advanced HCC—targets multiple kinases, including VEGFRs, but has only an overall mild benefi cial

effect. We found that VEGFA amplifi cation specifi es mouse and human HCCs that are distinctly sensi-

tive to sorafenib. FISH analysis of a retrospective patient cohort showed markedly improved survival

of sorafenib-treated patients with VEGFA -amplifi ed HCCs, suggesting that VEGFA amplifi cation is a

potential biomarker for HCC response to VEGF-A–blocking drugs.

SIGNIFICANCE: Using a mouse model of infl ammation-driven cancer, we identifi ed a subclass of HCC

carrying VEGFA amplifi cation, which is particularly sensitive to VEGF-A inhibition. We found that a simi-

lar amplifi cation in human HCC identifi es patients who favorably responded to sorafenib—the fi rst-line

treatment of advanced HCC—which has an overall moderate therapeutic effi cacy. Cancer Discov; 4(6);

730–43. ©2014 AACR.

See related commentary by Luo and Feng, p. 640.

Authors’ Affi liations: 1 The Lautenberg Center for Immunology; 2 Depart-ment of Developmental Biology and Cancer Research, IMRIC, Hadassah Medical School, Hebrew University; 3 Department of Pathology, Hadassah-Hebrew University Medical Center, Jerusalem; 4 Liver Unit, Tel Aviv Sour-asky Medical Center, Tel Aviv, Israel; 5 Institute of Pathology, University Hospital Basel, Basel, Switzerland; 6 Division of Signal Transduction and Growth Control (A100), 7 Division of Molecular Genetics (B060), and 8 Jun-ior Group Molecular Mechanisms of Head and Neck Tumors (A102), Ger-man Cancer Research Center (DKFZ), DKFZ-ZMBH Alliance; 9 Institute of Pathology, University Hospital Heidelberg; Departments of 10 Otolaryngol-ogy, Head and Neck Surgery and 11 Internal Medicine, University Hospital Heidelberg, Heidelberg; and 12 Department of Gastroenterology, Hepatology and Endocrinology, Hannover Medical School, Hannover, Germany

Note: Supplementary data for this article are available at Cancer Discovery Online (http://cancerdiscovery.aacrjournals.org/).

Corresponding Authors: Eli Pikarsky, The Lautenberg Center for Immunol-ogy, IMRIC, Hadassah Medical School, Hebrew University, Kiryat Hadas-sah, P.O.B. 12272, Jerusalem 91120, Israel. Phone: 972-2-675-8202; Fax: 972-2-642-6268; E-mail: [email protected] ; and Yinon Ben-Neriah, The Lautenberg Center for Immunology, IMRIC, Hadassah Medical School, Hebrew University, Kiryat Hadassah, P.O.B. 12272, Jerusalem 91120, Israel. Phone: 972-2-675-8718; E-mail: [email protected]

doi: 10.1158/2159-8290.CD-13-0782

©2014 American Association for Cancer Research.

on March 27, 2016. © 2014 American Association for Cancer Research. cancerdiscovery.aacrjournals.org Downloaded from

Published OnlineFirst March 31, 2014; DOI: 10.1158/2159-8290.CD-13-0782

Page 2: Cancer Discovery-2014-Horwitz-730-43

JUNE 2014�CANCER DISCOVERY | 731

INTRODUCTION Hepatocellular carcinoma (HCC) is the third leading cause of

cancer-related mortality worldwide, with the highest increase

rate in North America ( 1, 2 ). Sorafenib is the mainstay of

therapy for advanced HCC and the only systemic drug that has

shown any survival advantage in HCC so far ( 3, 4 ). However,

patients’ response is modest, and sorafenib treatment is asso-

ciated with side effects ( 3–8 ). Thus, several studies looked for

predictive markers for sorafenib response ( 9–11 ), yet no such

biomarkers have entered the clinical setting. Predictive biomar-

kers, identifying patient subsets to guide treatment choices, are

usually based on distinct pathogenetic mechanisms, and are

the cornerstone of personalized medicine ( 12, 13 ). Prominent

examples include ERBB2 amplifi cation and KRAS mutations

that serve as key determinants of treatment with trastuzumab

or cetuximab, respectively ( 14, 15 ).

Sorafenib is a multikinase inhibitor, the targets of which

include BRAF, CRAF, PDGFR2, c-KIT, and the VEGFA recep-

tors (VEGFR; refs. 10 , 16 ). Although VEGFRs were postulated

as mediators of sorafenib response in HCC, testing for VEGF-A

serum levels was not found to be predictive of sorafenib

treatment success ( 10 ). Moreover, bevacizumab, an antibody

against VEGF-A, only shows minimal responses in HCC

( 17–20 ). A possible explanation for this is that the mecha-

nism of action of sorafenib is predominantly independent of

VEGF-A inhibition. Alternatively , a small subset of patients

who can respond to VEGF-A blockers may exist that was

underrepresented in bevacizumab studies.

VEGF-A is a master regulator of angiogenesis whose role

in tumor vessel recruitment is well established ( 21 ). However,

additional roles for VEGF-A in tumorigenesis are emerging.

VEGF-A was shown to promote tumor cell growth in an

autocrine manner, in skin and lung cancer cells expressing

VEGFRs ( 22, 23 ). Moreover, VEGF-A also has nonangiogenic

functions in normal physiology. In liver tissue, VEGF-A elicits

hepatocyte proliferation by elevating expression of hepato-

cyte mitogens in liver sinusoidal endothelial cells ( 24, 25 ).

HCC is most commonly the outcome of chronic injury and

infl ammation, resulting in hepatocyte regeneration and dys-

regulated growth factor signaling ( 1 , 26 ). It has become clear

that infl ammatory signaling pathways can support survival,

growth, and progression of cancer. Accordingly, secreted

cytokines and effector molecules, which are abundant in the

tumor microenvironment, could constitute suitable targets

for treatment and primary prevention of HCC ( 26 ). Here, we

used Mdr2 -defi cient mice ( Mdr2 −/− ), which develop chronic

liver infl ammation, eventually leading to infl ammation-

induced liver tumors similar to human HCC ( 27, 28 ), to look

for candidate treatment targets modulating the tumor micro-

environment that are relevant to human HCC.

RESULTS Array CGH Reveals Recurrent Gains in the VEGFA Locus Identifying a Molecularly Distinct Tumor Subpopulation

In search of microenvironment-affecting factors whose

amplifi cation or deletion plays a role in infl ammation-induced

HCC development, we applied array-based comparative

genomic hybridization (aCGH) to 10 HCCs obtained from

16-month-old Mdr2 −/− mice (Supplementary Fig. S1A). We

detected several amplifi cations and deletions, including an

amplifi cation in the qB3 band of murine chromosome 17

(Chr17qB3; Supplementary Table S1), encoding among oth-

ers the gene for VEGF-A. Genomic amplifi cation of Vegfa was

of interest as it is a cytokine gene that can modulate several

components of the tumor microenvironment and induce liver

cell growth ( 24, 25 ). To determine the frequency of this ampli-

fi cation, we tested a larger cohort of Mdr2 −/− tumors by quan-

titative PCR (qPCR) of tumor DNA (Supplementary Fig. S1B)

and chromogenic in situ hybridization (CISH; Fig. 1A ); 13 of

93 (∼14%) HCCs harbored this amplicon. To map the minimal

amplifi ed region of this amplicon, we used DNA qPCR directed

at several loci along murine chromosome 17 in a cohort of

tumors bearing this amplifi cation ( Fig. 1B ). We found that

the common proximal border lies between 43.3 and 48.5 mega

base pairs (Mbp) from the chromosome 17 start. This minimal

amplifi ed region spanned 53 genes (Supplementary Table S2).

Amplifi cation of human Chr6p21 (the region syntenic for

murine Chr17qB3) and whole chromosome gains were previ-

ously reported in several whole-genome analyses of human

HCC with a frequency ranging between 7% and 40% ( 29–33 ).

Accordingly, through FISH, we found VEGFA amplifi cations

and chromosome 6 polysomies in 11% of human HCCs we

tested (21 of 187; Fig. 1C ; Supplementary Table S3).

To elucidate the tumor relevance of these chromosomal

gains, we analyzed the expression of mouse Chr17qB3 ampli-

con genes in amplicon-positive (herein Amp pos ) and amplicon-

negative (Amp neg ) tumors. Matched increases in mRNA and

DNA levels were found for Vegfa , Tjap1 , and Xpo5 ( Fig. 1D

and Supplementary Fig. S2A). We further found a correlation

between Chr17qB3 amplifi cation and VEGF-A protein levels

in both tumor extracts and serum ( Fig. 1E and Supplemen-

tary Fig. S2B). Furthermore, double immunostaining for

VEGF-A and E-cadherin in Amp pos tumors showed that the

tumor cells are indeed the main origin of VEGF-A in these

tumors ( Fig. 1F ). Thus, amplifi cation of murine Chr17qB3 is

a recurrent event in HCC associated with an elevated expres-

sion of several resident genes, including Vegfa .

Amp pos Tumors Display Distinct Histologic Features

Tumor cell proliferation is a strong and consistent marker

of poor prognosis in human HCC ( 34 ). Bromodeoxyuridine

(BrdUrd ) immunostaining revealed that Amp pos mouse HCCs

displayed a 2-fold higher proliferation index compared with

Amp neg tumors ( Fig. 2A and B , top). No differences were

noted in apoptosis (Supplementary Fig. S2C) or in the pres-

ence of neutrophils or fi broblasts (data not shown). Other

histologic features, differing between Amp pos and Amp neg

mouse HCCs, include a 6-fold higher vessel density ( Fig.

2A and B , middle) and 4-fold higher macrophage content

( Fig. 2A and B , bottom). Moreover, several signature genes

of tumor-associated macrophages (TAM), including those

encoding Arginase 1, TGFβ, and YM1 ( 35, 36 ), were elevated

in the Amp pos group ( Fig. 2C ), whereas markers of classically

on March 27, 2016. © 2014 American Association for Cancer Research. cancerdiscovery.aacrjournals.org Downloaded from

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732 | CANCER DISCOVERY�JUNE 2014 www.aacrjournals.org

Horwitz et al.RESEARCH ARTICLE

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Figure 1.   A recurrent gain in the VEGFA locus identifying a molecularly distinct tumor subpopulation. A, representative photomicrographs of CISH using probes specifi c for the murine Chr17qB3. B, DNA qPCR analysis using primers specifi c for different loci on the qB3 arm of chromosome 17. Each vertical line represents a single Amp pos tumor. The thin line represents nonamplifi ed regions, and the thick line represents amplifi ed regions. The list includes several of the residing genes (a full list is available as Supplementary Data). C, representative photomicrographs of FISH of human HCC using Chr6p12 probe (red) and chromosome 6 centromere probe (green). D, qPCR analysis of the mRNA levels of murine genes encoded on the amplifi ed region. Each dot represents a different tumor. The cross line signifi es geometric mean (n.s., not signifi cant; **, P < 0.01; ***, P < 0.0001). E, qPCR and ELISA analyses of VEGF-A performed on extracts of wild-type (WT) livers, Amp neg , and Amp pos Mdr2 −/− tumors in matching pairs show a correlation between the increase in mRNA and protein levels. F, confocal microscopy images of an Mdr2 −/− Amp pos tumor immunostained for E-cadherin and VEGF-A. Hoechst 33342 marks nuclei. Scale bar, 20 μm.

on March 27, 2016. © 2014 American Association for Cancer Research. cancerdiscovery.aacrjournals.org Downloaded from

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JUNE 2014�CANCER DISCOVERY | 733

VEGFA Amplifi cation in HCC RESEARCH ARTICLE

Figure 2.   Amp pos tumors are a distinct tumor subpopulation. A, representative IHC photomicrographs for BrdUrd, vWF, and F4/80. Scale bar, 50 μm (BrdUrd) and 100 μm (vWF and F4/80). B, IHCs were quantifi ed using automated image analysis ( n ≥ 7; *, P < 0.01; **, P < 0.05). C, qPCR analysis of tumor-associated (protumorigenic) and classically activated (antitumorigenic) macrophage markers. Each dot represents a different tumor. The cross line signifi es geometric mean (n.s., not signifi cant; **, P < 0.01; ***, P < 0.001). D, immunofl uorescent stain for MRC1 on Amp neg and Amp pos tumors. Scale bar, 40 μm. E, quantifi cation of MRC1 immunofl uorescence. Bars represent geometric mean; **, P < 0.01.

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on March 27, 2016. © 2014 American Association for Cancer Research. cancerdiscovery.aacrjournals.org Downloaded from

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734 | CANCER DISCOVERY�JUNE 2014 www.aacrjournals.org

Horwitz et al.RESEARCH ARTICLE

activated macrophages, including TNFα, inducible nitric

oxide synthase (iNOS ), CXCL10, and IL12p40, were similar

in both tumor groups ( Fig. 2C and Supplementary Fig. S3A).

Along with these, immunofl uorescent staining for the protu-

morigenic macrophage marker MRC1 revealed a higher pres-

ence of MRC1-expressing cells in Amp pos tumors ( Fig. 2D and

E ). Of note, VEGF-A was shown to act as a chemoattractant

for naïve myeloid cells, which facilitate the generation of new

blood vessels ( 37 ). Together, these data signify Amp pos tumors

as a distinct subgroup of HCCs characterized by enhanced

presence of specifi c microenvironmental components and

increased proliferation rate.

Histologic analysis of human HCCs revealed several char-

acteristic traits of HCCs harboring VEGFA gains. A higher

incidence of vascular invasion was found in the Amp pos

group (9 of 20 Amp pos tumors vs. 1 of 20 Amp neg tumors;

P < 0.01; Supplementary Table S4). A lower incidence of fi brosis

within tumor tissue was found in the Amp pos group as well. Few

additional traits nearly reaching statistical signifi cance were

identifi ed (Supplementary Table S4). We found no differences

in several clinical characteristics of HCC including underlying

disease, gender, or tumor size (Supplementary Fig. S4A–S4C).

Altogether, these results indicate that in both murine Mdr2− /−

and human HCCs, tumors that harbor genomic gains in the

VEGFA locus are distinct from those that do not.

Macrophage–Tumor Cell Cross-talk in Amp pos Tumors

Previous studies have delineated hepatocyte–endothelial

cross-talk taking place in non-neoplastic liver, wherein VEGF-A

stimulates endothelial cells to secrete several mitogens includ-

ing hepatocyte growth factor ( HGF; refs. 24, 25 ). We hypothe-

sized that Amp pos HCCs exploit this interaction for promoting

tumor cell proliferation. Following this notion, we detected a

3-fold elevation of Hgf mRNA levels in Amp pos versus Amp neg

mouse tumors ( Fig. 3A ). We did not fi nd signifi cant changes

in other angiocrine-produced molecules ( 24, 25 )—Wnt2, IL6,

and heparin binding EGF-like growth factor (HB-EGF; data

not shown). Immunostaining detected HGF expression only

in Amp pos tumors, exclusively in the non-neoplastic stromal

cells ( Fig. 3B ). Immunofl uorescent staining for von Willebrand

Factor (vWF), F4/80, and HGF suggested that macrophages are

the major cell type expressing HGF ( Fig. 3C ).

To understand the VEGF-A–HGF relationship, we isolated

hepatocytes and macrophages from Mdr2 −/− livers at the age

of 8 months ( Fig. 3D and Supplementary Fig. S3B), a time

point signifi ed by marked dysplasia, yet no overt HCC for-

mation ( 27 ). mRNA profi ling of these fractions showed that

the genes encoding VEGFRs (FLT1 and KDR) and corecep-

tors [Neuropilin (Nrp)1 and 2] were higher in macrophages

whereas the HGF receptor (c-MET) was more abundant in

hepatocytes ( Fig. 3E ). This aligns with previous work showing

that hepatocytes are inert to direct activation with VEGF-A

( 24 ). Immunostaining for KDR in Amp pos tumors demon-

strated that its expression in these tumors was restricted to

non-neoplastic cells ( Fig. 3F ). This correlated with a modest

increase in mRNA levels of both Kdr and Flt1 in total tumor

lysates, which was comparable with the increase in mRNA

levels of recruited macrophage and endothelial markers Msr1

and Cd105 , respectively ( Fig. 3G ). Recapitulating this interac-

tion in vitro , we treated peritoneal macrophages with recom-

binant VEGF-A and detected an increase in Hgf mRNA levels

( Fig. 3H ). This raises the possibility that VEGF-A in Amp pos

tumors does not provide autocrine signals to hepatocytes,

but rather acts through manipulation of the microenviron-

ment to induce HGF secretion.

VEGF-A Increases Cellular Proliferation in HCC To prove the functional role of VEGFA in this genomic ampli-

fi cation, we set out to inhibit VEGF-A in Mdr2 −/− tumors. To

this end, we injected intravenously adenoviral vectors encoding

GFP alone or GFP and the soluble VEGFR1 (sFLT), a potent

inhibitor of VEGF-A ( 38 ), into 56 tumor-harboring Mdr2− /−

mice of ages 14 to 18 months and sacrifi ced them 10 days fol-

lowing injection (Supplementary Fig. S5A). Vegfa amplifi cation

status was determined after sacrifi ce by both DNA qPCR and

Vegfa mRNA expression ( Fig. 4C and data not shown). Liver

damage, measured through plasma aspartate aminotransferase

(AST) activity, was similar in all groups (Supplementary Fig.

S5B). Immunostaining for BrdUrd, Ki67, and phosphorylated

histone H3 (pHH3) revealed that blocking VEGF-A markedly

inhibited tumor cell proliferation in Amp pos tumors, but not

in Amp neg ones ( Fig. 4A and B and Supplementary Fig. S5C

and S5D). This decrease in proliferation was accompanied by

reduced Hgf mRNA levels ( Fig. 4C ). Treatment with adenovi-

rus encoding GFP alone did not induce any change in either

group. Macrophage infi ltration and protumorigenic macro-

phage expression profi le did not decrease following the sFLT

treatment (Supplementary Fig. S5C and S5D and data not

shown). Macroscopic and histologic analyses revealed multiple

foci of coagulative necrosis only in sFLT-treated Amp pos tumors

(3 of 6 vs. 0 of 10 in Amp neg ; P < 0.05; Fig. 4D ). In these specifi c

tumors, we also found an elevation of the hypoxia-inducible

factor-1α (HIF1α) target genes Glut1 and Pgk1 ( Fig. 4C ), indica-

tive of tissue hypoxia. Immunostaining for vWF revealed a

trend of decrease in vasculature only in VEGF-A–blocked

Amp pos tumors, particularly in the hypoxic tumors (Supple-

mentary Fig. S5C and S5D). These data denote Amp pos tumors

as hypersensitive to direct inhibition of VEGF-A.

Overexpression of VEGF-A in HCC Cells Increases Proliferation Only In Vivo

To further substantiate the tumor–stroma relationship with

respect to VEGF amplifi cation, in particular hepatocyte VEGF-

A eliciting a macrophage HGF–heterotypic circuit in tumor

growth, we injected human Hep3B HCC cells transduced with

a lentivector overexpressing human VEGF-A into immuno-

defi cient mice (Supplementary Fig. S6A). The in vivo growth

rate of VEGF-A–overexpressing cells was higher than control

vector–transduced cells ( Fig. 5A and Supplementary Fig. S6B).

This correlated with higher proliferation rate and increased

HGF expression ( Fig. 5B–D and Supplementary Fig. S6C and

S6D), phenocopying the Amp pos Mdr2 −/− HCCs. Supporting

the non–cell-autonomous role, VEGF-A overexpression did

not affect the in vitro growth rate of Hep3B cells ( Fig. 5E ). We

also found no difference in expression of the hypoxia markers

prolyl hydroxylase domain 3 (PHD3) and lactate dehydroge-

nase A (LDHA) in these xenografts, lending further support to

a nonangiogenic role for VEGF-A in HCC (Supplementary Fig.

S6E). Immunofl uorescence confi rmed VEGF-A expression in

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VEGFA Amplifi cation in HCC RESEARCH ARTICLE

Figure 3.   A macrophage-tumor cell cross-talk within Amp pos tumors. A, qPCR analysis of Hgf mRNA in WT livers, Amp neg , and Amp pos tumors. The cross line signi-fi es geometric mean (**, P < 0.001). B, representative photomicrographs of IHC for HGF on Amp neg and Amp pos tumors. Scale bar, 100 μm. C, representative confocal microscopy images of Amp pos tumor immunostained for vWF, F4/80, and HGF. Hoechst 33342 marks nuclei. Scale bar, 40 μm. D, representative cytospin preparations of macrophage and hepatocyte fractions from Mdr2 −/− liv-ers. E, qPCR analysis of hepatocyte and macrophage fractions ( n = 11 different mice), isolated from livers of Mdr2 −/− mice. Bars represent geometric mean (**, P < 0.001; ***, P < 0.0001). F, representa-tive photomicrograph of IHC for the VEGFR KDR in Amp neg and Amp pos tumors. Note that the expression of KDR is confi ned to endothelial and stromal cells. Scale bar, 100 μm. G, mRNA qPCR analysisfor the VEGFRs Kdr and Flt1 and the macrophage and endothelium markers Msr1 and Cd105 on tissue lysates from the indicated groups. Each dot represents a different tumor. The cross line represents geo-metric mean (***, P < 0.0001). H, peritoneal macrophages were cultured under serum-free conditions followed by 8 hours of exposure to recombinant murine VEGF-A (100 ng/mL). Hgf expression was measured by qPCR. Bars represent geometric mean; n ≥ 3; *, P < 0.05.

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transduced tumor cells and revealed HGF expression in mac-

rophages (Supplementary Fig. S7A).

Next, we generated single-cell suspensions from VEGF-A–

overexpressing or control Hep3B ZsGreen-labeled xenografts

and isolated macrophages (ZsGreen − CD45 + F4/80 + ) and endo-

thelial cells (ZsGreen − CD45 − Meca32 + ) using FACS sorting.

qPCR analysis of the macrophage-specifi c and endothelium-

specifi c genes, Msr1 and Cd105 , respectively, confi rmed

successful separation of cell populations (Supplementary

Fig. S7B). Although VEGF-A and control tumor groups

did not show signifi cant differences in the TAM genes Tgfb ,

Ym1 , Tnfa , and Nos2 (Supplementary Fig. S7C), we found

a 2-fold increase in Hgf expression in macrophages, but

not endothelial cells, isolated from VEGF-A–overexpress-

ing tumors ( Fig. 5F ). Thus, VEGF-A overexpression by HCC

cells is suffi cient to induce upregulation of HGF, mostly in

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Horwitz et al.RESEARCH ARTICLE

Figure 4.   VEGF-A inhibition impedes proliferation in Amp pos tumors. Mdr2 −/− mice were treated with adenovectors expressing either GFP alone or GFP and sFLT for 10 days. A, representative photomicrographs of IHC for BrdUrd. Tumor-infi ltrating cells remain proliferative. Scale bar, 100 μm. B, BrdUrd immunostaining was quantifi ed using automated image analysis ( n ≥ 6; *, P < 0.05). C, mRNA qPCR analysis of the indicated genes in Amp neg and Amp pos tumors treated with the indicated adenovectors. Each dot represents a different tumor. The cross line signifi es geometric mean (***, P < 0.0001). D, left, histologic section stained with H&E depicting necrosis, representing three out of the six sFLT-treated Amp pos tumors. Scale bar, 500 μm. Right, a macro-scopic picture of a tumor with hemorrhagic necrosis. Scale bar, 0.5 cm.

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Figure 5.   VEGF-A overexpression enhances tumor cell proliferation. Immunodefi cient mice were subcutaneously injected with Hep3B cells transduced with control vector or with a human VEGF-A vector. A, growth curve of xenografts transduced with control vector (black line) or with VEGF-A lentivec-tor (gray line). Tumor volumes were measured topically with a caliper (*, P < 0.05; **, P < 0.01). B, representative photomicrographs of IHC for BrdUrd in control or VEGF-A lentivector-transduced xenografts. Scale bar, 100 μm. C, BrdUrd immunostaining was quantifi ed using automated image analysis ( n ≥ 3; *, P < 0.05; a representative experiment of two performed is shown). D, mRNA qPCR analysis in control or VEGF-A lentivector-transduced xenografts. Bars represent geometric mean ( n ≥ 4; *, P < 0.05; **, P < 0.01). E, XTT in vitro proliferation assay of the indicated lentivector-transduced cultured cells. F, expression of Hgf in macrophage and endothelial fractions from tumors overexpressing VEGF-A and controls determined by qPCR. Bars represent geometric mean; n ≥ 3; *, P < 0.05; ND, not detected—amplifi cation did not occur in any of the sample’s wells.

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VEGFA Amplifi cation in HCC RESEARCH ARTICLE

macrophages, and leads to increased proliferation of tumor

cells.

Profi ling Proangiogenic-Factor Expression in Mdr2 −/− HCC

As Amp neg tumors did not respond to sFLT treatment, we

profi led other proangiogenic factors that can support tumor

vascularization. mRNA qPCR analysis of the genes encod-

ing angiopoietin 1 and 2, angiopoietin like 2, FGF 1 and 2,

platelet-derived growth factor (PDGF)-A, -B, and -C, placental

growth factor (PLGF) , and VEGF-B revealed that several of

these factors were overexpressed in Mdr2 −/− HCCs compared

with normal livers, irrespective of the amplicon status. Nota-

bly, Pdgfc levels were signifi cantly higher (2.4-fold) in Amp neg

compared with Amp pos tumors ( Fig. 6 ). This is in line with

a previous report showing that PDGF-C can promote ang-

iogenesis in a VEGF-A–independent manner ( 39 ) and could

provide a plausible explanation for the lack of effect on vessel

density in Amp neg tumors in response to sFLT.

Murine Amp pos Tumors Are Uniquely Sensitive to Sorafenib

Sorafenib is the only systemic drug showing a clinical

advantage in patients with advanced HCC who are not eligi-

ble for local therapies and is a fi rst-line treatment for these

patients ( 3 ). As sorafenib inhibits VEGFRs and BRAF—a

downstream effector of both VEGFRs and the HGF receptor

c-MET ( 21 , 40 , 41 )—we tested whether sorafenib may have a

selective advantage in Amp pos tumors. We treated 58 Mdr2 −/−

mice ages 14 to 18 months with sorafenib or vehicle alone

for 3 days, after which they were sacrifi ced and tumor tissue

was analyzed (experimental design depicted in Supplemen-

tary Fig. S5A). Amplifi cation status was assessed after sac-

rifi ce by DNA qPCR and verifi ed by Vegfa mRNA expression

( Fig. 7C and data not shown). Immunostaining for BrdUrd

and pHH3 demonstrated decreased proliferation in soraf-

enib-treated mice in Amp pos but not Amp neg HCCs ( Fig. 7A

and B and Supplementary Fig. S8A and S8B). Similar to

VEGF-A inhibition, Hgf levels were decreased only in soraf-

enib-treated Amp pos tumors ( Fig. 7C ). Although no effects

were observed on tumor macrophage density (Supplemen-

tary Fig. S8A and S8B), expression of the TAM marker TGFβ

was decreased in sorafenib-treated Amp pos tumors (Sup-

plementary Fig. S8C). Blood vessel density changes or signs

of hypoxia were absent (Supplementary Fig. S8A–S8C),

possibly due to the short treatment duration, implying

that the early inhibitory effect of sorafenib in VEGF-A–

amplifi ed tumors may be independent of angiogenesis.

Figure 6.   Angiogenic factors elevated in murine Mdr2 −/− HCC. mRNA qPCR analysis of Mdr2 −/− tumors for the indicated angiogenesis regulators. Values shown are fold over normal livers’ average. Each dot represents a different tumor. The cross line signifi es geometric mean, signifi cance marks immedi-ately above each group refer to comparison with normal livers. Topmost signifi cance marks represent the comparison between Amp neg and Amp pos tumors ( n = 4 normal liver; n ≥ 6 in tumor groups; n.s., not signifi cant; *, P < 0.05; **, P < 0.01; ***, P < 0.001). PDGF, platelet-derived growth factor.

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Horwitz et al.RESEARCH ARTICLE

Figure 7.   Amp pos tumors are uniquely sensitive to sorafenib. A, representative BrdUrd immunostains. Scale bar, 100 μm. B, BrdUrd immunostaining was quantifi ed using automated image analysis ( n ≥ 6; *, P < 0.05). C, qPCR analysis of Amp neg and Amp pos tumors treated as indicated. Each dot represents a different tumor. The cross line signifi es geometric mean (n.s., not signifi cant; *, P < 0.01). D, growth curves of xenografts transduced with control (dashed lines) or VEGF-A (solid lines) lentivectors, treated daily with sorafenib (gray lines) or nontreated (NT, black lines). Tumor volumes were measured with a caliper ( n ≥ 6; *, P < 0.05). E, Kaplan–Meier curves showing survival of resected HCC patients negative ( n = 96) or positive ( n = 14) for VEGFA gain (p log-rank > 0.05). F, Kaplan–Meier curves showing survival of patients with HCC treated with sorafenib, negative ( n = 47, 10 months median) or positive for VEGFA gain ( n = 7; median undefi ned; plog-rank = 0.029). G and H, genomic gains in VEGFA promote tumorigenesis through the microenvironment. G, an increase in VEGFA gene copy number in liver tumor cells leads to elevated VEGF-A secretion. VEGF-A modulates the tumor microenvironment in favor of tumor cell growth through several modes: (i) recruitment of TAMs expressing the mitogen HGF and (ii) activating the liver endothelium to secrete angiocrine factors and enhance the tumor blood supply. H, inhibition of VEGF-A through soluble receptor or sorafenib results in decreased HGF signaling and blood supply, impeding tumor growth.

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JUNE 2014�CANCER DISCOVERY | 739

VEGFA Amplifi cation in HCC RESEARCH ARTICLE

Amp neg tumors did not show any measurable response to

sorafenib.

In addition, we treated mice bearing Hep3B xenografts,

with or without VEGF overexpression, with sorafenib for 10

days. Similar to the Mdr2− /− HCCs, this treatment markedly

reduced growth, proliferation, and HGF expression in VEGF-

A–overexpressing HCCs but did not affect control HCCs ( Fig.

7D and Supplementary Fig. S9A–S9D). Despite the longer

duration of treatment, we still could not detect changes in

macrophage or blood vessel densities (Supplementary Fig.

S10A–S10C). Of note, a differential response to sorafenib was

not evident in vitro , emphasizing the importance of microen-

vironmental factors (Supplementary Fig. S10D).

Benefi cial Effect of Sorafenib Treatment in Human Patients with HCCs Bearing VEGFA Gains

Noting the predictive potential of Vegfa gains in the mouse

model, we analyzed samples from patients with HCC who

underwent tumor resection. This retrospective cohort was col-

lected from three different centers. To assess the correlation

between VEGFA gain and survival, we analyzed human tumor

samples by FISH ( Fig. 1C ). Survival of patients with HCC who

did not receive sorafenib was independent of VEGFA status

( Fig. 7E ). However, markedly improved survival was seen in

the VEGFA -gain group compared with the non-gain group

in sorafenib-treated patients (indefi nable median survival

from sorafenib treatment start and 11 months, respectively;

p log-rank = 0.029; Fig. 7F ). Taken together, our mouse data

and retrospective analysis of a human cohort imply that

VEGFA gains correlate with a particularly benefi cial response

to sorafenib, and possibly other VEGF-A inhibitors, in HCC.

DISCUSSION Using a mouse model of infl ammation-induced HCC,

we identifi ed and characterized a unique group of HCC in

humans and mice. These tumors are defi ned by genomic gains

of a region encompassing VEGFA , and are distinct in histologic

appearance, rate of proliferation, and microenvironmental

content. We delineated cytokine-based heterotypic cross-talk

between malignant Amp pos hepatocytes and tumor stromal

cells. Importantly, we showed that mouse Amp pos tumors are

uniquely sensitive to VEGF-A inhibition and to sorafenib. A

retrospective analysis of human HCCs indicates that genomic

gains of VEGFA can predict response to sorafenib.

The Mdr2 −/− model of infl ammation-induced HCC yields

primary tumors each holding specifi c genetic changes. There-

fore, we denote it as a sound platform to test the pro-

tumorigenic effects of recurring changes in an unbiased

manner. Moreover, the infl ammatory background in this

model is particularly relevant for studying tumor–microenvi-

ronment interactions in clinically relevant settings. Previous

work showed that systemic elevation of VEGF-A induces

proliferation of normal hepatocytes through factors secreted

from endothelial cells ( 24 ). Although hepatocytes are inert

to VEGF-A, liver sinusoidal cells respond to VEGF-A with

counter-secretion of HGF ( 24 ). Furthermore, in regenerat-

ing livers, hepatocyte proliferation was shown to depend on

VEGF-A–induced expression of HGF from endothelial cells

( 25 ). Here, we show that recurring genomic gains in VEGFA ,

detected in a subset of HCCs, can promote tumor growth

through a similar cell–cell interaction module.

TAMs are key players in tumor progression and are known

to modulate invasion, angiogenesis, immune response, and

metastasis ( 36 ). TAMs are characterized by a specifi c phe-

notype, distinguished by a unique expression signature.

Previous studies have shown that VEGF-A recruits myeloid

cells that play an active part in vessel growth processes ( 37 ,

42 ). In agreement, we observed that Amp pos tumors harbor

higher numbers of TAMs compared with Amp neg tumors and

detected features of protumorigenic macrophages. Our fi nd-

ings therefore raise the interesting possibility that the VEGFA

amplicon contributes to the infl ammatory microenviron-

ment, which supports developing tumors.

Our data suggest that VEGFA genomic gains facilitate

tumor development by several different modes: (i) providing

a microenvironment rich in TAMs; (ii) promoting prolif-

eration via stroma-derived HGF secretion (and possibly other

cytokines as well); and (iii) enhancing tumor angiogenesis.

Interestingly, all these modes entail heterotypic cellular inter-

actions, distinguishing this particular genomic gain from

other studied amplicons ( 43 ). We maintain that the unique

sensitivity of tumors with VEGFA gains to VEGF-A block-

ade stems from these multiple protumorigenic functions of

VEGF-A ( Fig. 7G and H ).

An amplicon spanning VEGFA was noted in several differ-

ent human cancers ( 29–31 , 33 , 43–51 ). A linear correlation

was found between mRNA levels of VEGFA and extent of

amplifi cation in human HCC ( 29 ). Amplifi cations in the

VEGFA locus and juxtaposed regions were associated with

advanced-stage HCC ( 30 ). In colorectal carcinoma and breast

cancer, this amplifi cation was found in correlation with vas-

cular invasion and shorter survival ( 46 , 51 ). Cumulative anal-

ysis of these reported human studies shows that gains and

amplifi cations of VEGFA are found in 7% to 30% of human

HCCs ( 29–33 ). Our interventional studies in the Mdr2 −/−

model indicate that Vegfa is a major driver of this amplicon,

which minimally harbors 53 genes in Mdr2 −/− murine tumors

and 11 genes in humans ( 32 ). Xenograft experiments reveal

that overexpression of VEGF-A in a human HCC cell line is

suffi cient to upregulate HGF expression and increase tumor

cell proliferation in vivo and that the tumor growth advantage

gained through this overexpression can be negated by sora-

fenib. Nevertheless, we cannot completely exclude the contri-

bution of other amplicon genes to tumorigenesis.

The fi rst line of treatment for advanced HCC is the multi-

kinase inhibitor sorafenib, which prolongs median survival

by 10 to 12 weeks ( 3, 4 ). The response to sorafenib seems

to be variable, and treatment is associated with signifi cant

side effects ( 3–8 ). Importantly, there are no clinically applied

biomarkers for predicting sorafenib response in HCC ( 10 ).

Among the multiple targets of sorafenib ( 16 ) are VEGFRs

and BRAF—a downstream effector of both VEGFRs and the

HGF receptor c-MET ( 21 , 40 ). Indeed, in line with our mouse

results, sorafenib treatment in patients led to a decrease in

serum HGF ( 10 ). Unlike most tumors, advanced HCC is

usually diagnosed and treated without obtaining tumor tis-

sue, making it diffi cult to establish tissue-based predictive

biomarkers. On the basis of our small-scale retrospective

study, we show that VEGFA gains may predict response to

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Horwitz et al.RESEARCH ARTICLE

sorafenib in HCC, thus enabling the tailoring of treatment

to only those patients who may benefi t from this side effect–

prone therapy. Notably, the same amplifi cation was also

found in lung, colorectal, bone, and breast cancers ( 44–48 );

thus, it is plausible that similar considerations could be

applied to other tumors harboring VEGFA gains.

METHODS Human Tissue Samples and Tissue Microarray

Human HCC tissues were obtained from resected patients from

the institutes of Basel University Hospital (Basel, Switzerland), Han-

nover Medical School Hospital (Hannover, Germany), and Heidel-

berg University Hospital (Heidelberg, Germany). Clinical information

included age at diagnosis, tumor diameter, gender, and survival time

information. Examination of tumor hematoxylin and eosin (H&E)

sections was performed by an expert liver pathologist (O. Pappo).

Samples from Heidelberg were also reviewed by Heidelberg patholo-

gists (C. Mogler and P. Schirmacher). The study was approved by

each of the institutions’ ethics committees—numbered 206/05

(Heidelberg), 660-2010 (Hannover), and EKBB20 (Basel). Required

cohort size was computed by power analysis to yield a power of at

least 90% with an α value of 0.05. Construction of the tissue micro-

array (TMA) was performed as follows: tissue samples were fi xed

in buffered 10% formaldehyde and embedded in paraffi n. H&E-

stained sections were made from each selected primary block (named

donor blocks) to defi ne representative tissue regions. Tissue cylinders

(0.6 mm in diameter) were then punched from the region of the

donor block with the use of a custom-made precision instrument

(Beecher Instruments). Afterward, tissue cylinders were transferred to

a 25 mm × 35 mm paraffi n block to produce the TMAs. The resulting

TMA block was cut into 3-μm sections that were transferred to glass

slides by use of the Paraffi n Sectioning Aid System (Instrumedics).

Sections from the TMA blocks were used for FISH analysis.

Mice Male and female Mdr2 −/− mice on FVB background were held in

specifi c pathogen-free conditions. Experiments on Mdr2 −/− mice were

performed in cohorts of 10 to 20 mice each time; results show the

combined data from at least four different experiments. Wild-type

(WT) controls were age-matched FVB mice. Mouse body weights dur-

ing the experiments were 30 to 45 g. Sorafenib (Xingcheng Chemp-

harm Co., Ltd.) was administered daily (50 mg/kg) by oral gavage.

Cremophor EL (Sigma)/ethanol/water (1:1:6) was used as a vehicle.

Two hours before sacrifi ce, mice were injected with 10 μL BrdUrd

(Cell Proliferation labeling reagent; Amersham) per 1 g body weight.

Mice were anesthetized with ketamine and xylazine and the liver was

perfused via the heart with PBS–Heparin solution followed by 4%

formaldehyde. Following perfusion, livers were removed and sub-

jected to standard histologic procedures. Xenograft experiments were

performed by subcutaneous injection of transduced Hep3B cells (2.5

× 10 6 ) suspended in 100 μL PBS and 100 μL Matrigel (Becton Dickin-

son) into NOD/SCID mice. Tumor volumes were assessed by external

measurement with calipers. All animal experiments were performed

in accordance with the guidelines of the institutional committee for

the use of animals for research. In all mouse experiments, the different

groups were housed together in the same cages.

Viral Vectors and Cultured Cells Adenoviral vectors encoding GFP or GFP and sFLT—a kind gift

from David Curiel (Washington University, St. Louis, MO) and Yosef

Haviv (Hadassah Hospital, Jerusalem, Israel)—were prepared in GH354

cells using standard procedures. A titer of 10 9 transducing units was

injected into mice tail veins. Mice whose livers did not yield minimal

60% adenovector transduction effi ciency (by tissue staining) were

excluded. Lentiviral-based vectors were prepared by subcloning the

PCR products of the human VEGFA 165 gene [from cDNA of decidual

natural killer (NK ) cells; a kind gift from Ofer Mandelboim, Hebrew

University, Jerusalem, Israel] into the pSC-B plasmid using the Strata-

Clone Kit (Stratagene), subsequently digested with Bam HI and NotI

and subcloned into the self-inactivating lentiviral vector pHAGE (gift

of Gustavo Mostoslavsky, Boston University School of Medicine, Bos-

ton, MA) digested with Bam HI and Not I. Lentivectors were produced

by cotransfection of the backbone vector plasmid with the gag-pol

and pMD.G plasmids and using standard procedures. Hep3B cells

(obtained from the ATCC) were grown in Dulbecco’s Modifi ed Eagle

Medium (DMEM; 10% FBS). Cells were tested free of Mycoplasma

before transduction and injection. Lentivector transduction effi ciency

was assessed by fl uorescent microscopy and was estimated as 80%.

In vitro proliferation was determined through XTT assay (Biological

Industries) using the manufacturer’s protocol. Murine recombinant

VEGF-A (R&D Systems) was used at the concentration of 100 ng/mL.

IHC, Immunofl uorescence, and ELISA Antibodies used for tissue immunostaining throughout the

work were—vWF (dilution at 1:300; Dako), pHH3 (1:800; Upstate),

cleaved caspase-3 (1:200; Cell Signaling Technology), F4/80 (1:300;

Seroteq), HGF (1:100; R&D Systems), BrdUrd (1:200; NeoMarkers),

KDR (1:400; Cell Signaling Technology), Ki67 (1:100; NeoMarkers),

E-cadherin (1:100; Cell Signaling Technology), and VEGF (1× as

supplied; Spring). IHC was performed on 5-μm paraffi n sections.

Antigen retrieval was performed in a decloaking chamber (Biocare

Medical) in citrate buffer for all antibodies except vWF and F4/80,

for which retrieval was performed with pronase (Sigma). Horserad-

ish peroxidase (HRP )–conjugated secondary antibodies for all IHC

antibodies used were Histofi ne (Nichirei Biosciences), except for anti-

mouse–derived antibodies that were detected with Envison (Dako).

3,3′-Diaminobenzidine (DAB; Lab Vision) was used as a chromogen.

Immunohistochemical stainings were quantitated when indicated

using an Ariol SL-50 system (Applied Imaging). For quantifi cation

of nuclear immunostaining, the ki-sight module of the Ariol-SL50

robotic image analysis system was applied. This system designates

classifi ers for positive (red-brown) and negative (azure) nuclei defi ned

by color intensity, size, and shape. Each tumor cell nucleus (distin-

guished by morphology) was designated as either positive or negative

by these parameters. The fraction of positive cells was calculated

from counting at least fi ve randomly selected fi elds in each tumor.

Immunofl uoresence was performed on snap-frozen tissue embed-

ded in OCT gel (Sakura Finetek) and sectioned to 8-μm slices.

Slides were incubated at 37°C and fi xed with both acetone and 4%

paraformaldehyde sequentially. Fluorophore-conjugated secondary

antibodies used were donkey anti-goat Alexa Fluor 647 (Invitro-

gen), donkey anti-rabbit Cy2/Cy5, donkey anti-mouse Cy3, and goat

anti-rat Cy3 (The Jackson Laboratory). Hoechst 33342 was used as

a nuclear marker (Invitrogen). Antibodies used for fl ow FACS sort-

ing were CD45-pacifi c blue, F4/80-PE (both 1:50; BioLegend), and

Meca32-biotin (1:50; BioLegend) used with streptavidin APC-Cy7

(BD Biosciences). Flow cytometry–based cell sorting was performed

in a FACSAria III cell sorter (BD Biosciences). VEGF-A ELISA was

performed using Quantikine mouse ELISA kit (R&D Systems).

DNA In Situ Hybridizations Probes for CISH analysis of mouse tumors were prepared from the

BAC clones RP24-215A3 for the murine Chromosome 17 (BACPAC

resources center). BAC clones were labeled with DIG using Nick-

Translation mix (Roche). Mouse Cot-1 DNA (Invitrogen) and soni-

cated murine genomic DNA were added to the probe for background

block. Tissues were prepared by boiling in pretreatment buffer and

digestion with pepsin (Zymed). Hybridization was performed at 37°C

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VEGFA Amplifi cation in HCC RESEARCH ARTICLE

overnight after denaturation at 95°C for 5 minutes. The SPoT-Light

Detection Kit (Invitrogen) was used for anti-DIG antibody and HRP-

conjugated secondary antibody.

FISH analysis for human HCCs was performed as follows. The

genomic BAC clone RPCIB753M0921Q (imaGENES), which covers the

human VEGFA gene region, was used for preparation of the FISH probe.

BAC-DNA was isolated using the Large-Construct Kit (Qiagen) accord-

ing to the instructions of the manufacturer. Isolated BAC-DNA (1 μg)

was digested with Alu I restriction enzyme (Invitrogen) and labeled with

Cy3-dUTP (GE Healthcare) using the BioPrime Array CGH Kit (Invit-

rogen). The labeling reaction was assessed by NanoDrop. Labeled DNA

was purifi ed with the FISH Tag DNA Kit (Invitrogen). TMAs and whole-

tissue sections were deparaffi nized in xylene for 20 minutes and subse-

quently washed with 100%, 96%, and 70% ethanol followed by a wash

with tap water (2 minutes each step). Slides were air dried at 75°C for 3

minutes. Slides were then boiled in pretreatment buffer [70% formamide,

2× saline-sodium citrate buffer (SSC)] at 100°C for 15 minutes followed

by a wash with tap water. Tissue was then subjected to Proteinase K

(Sigma) treatment at 37°C for 70 minutes followed by a wash in tap

water (2 minutes). Dehydration of slides was performed by serial immer-

sion of slides in 70%, 96%, and 100% ethanol (2 minutes each step). Slides

were then air dried at 75°C for 3 minutes. The FISH probe was applied

and slides were sealed with rubber cement. Following a denaturation

step (10 minutes at 75°C), slides were incubated overnight at 37°C.

Slides were washed in Wash Buffer (2× SSC, 0.3% NP40, pH 7–7.5) and

counterstained with 4′,6-diamidino-2-phenylindole (DAPI) I solution

(1,000 ng/mL; Vysis Abbott Molecular). As reference, a Spectrum Green-

labeled chromosome 6 centromeric probe (Vysis Abbott Molecular) was

used. Images were obtained with a Zeiss fl uorescence microscope using

a 63× objective (Zeiss) and the Axiovision software (Zeiss).

FISH results were evaluated according to (i) absolute VEGFA gene

copy number and chromosome 6 copy number and (ii) VEGFA gene/

chromosome 6 copy number ratio. The following classifi cation was

used: not amplifi ed— VEGFA /Chr6 ratio of less than 1.8; equivocal/

borderline— VEGFA /Chr6 ratio between 1.8 and 2.2; and amplifi ed—

VEGFA /Chr6 ratio higher than 2.2, as proposed by the ASCO/CAP

(American Society of Clinical Oncology/College of American Pathol-

ogists) guidelines for HER2 amplifi cation in breast cancer. High poly-

somy was defi ned as >3.75 copies of the CEP6 probe, low polysomy

was defi ned as cases displaying between 2.26 and 3.75 copies of the

CEP6 probe ( 52, 53 ). All cases displaying either amplifi cation or poly-

somy were collectively defi ned as VEGFA gain. FISH quantifi cation

and classifi cation were done by an expert molecular pathologist who

had no access to the clinical data (L. Tornillo).

aCGH and qPCR Genomic DNA was isolated using the QIAGEN DNAeasy Tissue

Kit. Samples were hybridized to mouse CGH 60-mer oligonucle-

otides microarrays (Agilent Technologies), washed, and scanned

according to the Agilent Technologies’ instructions. Data were ana-

lyzed using Feature Extraction software V8.1 (Agilent), GeneSpring

GX V7.3.1, and CGH Analytics V3.4.27 (Agilent) software. RNA

was extracted from tissues by mechanical grinding in TriReagent

(Sigma) with a Polytron tissue homogenizer (Kinematica) at maxi-

mum speed. cDNA was prepared with Moloney murine leukemia

virus (MMLV) reverse transcriptase (Invitrogen). qPCR analyses were

carried out with SYBR green (Invitrogen) in 7900HT Fast Real-Time

PCR System (Applied Biosystems). Results were analyzed using the

qBase v1.3.5 software. Primer sequences are available in Supplemen-

tary Table S5. In the xenografts experiment, murine Hgf mRNA levels

were assessed with TaqMan probe (Life Sciences). Human hypox-

anthine phosphoribosyltransferase ( HPRT ) and ubiquitin C ( UBC )

were used as reference genes in the xenograft experiment. Hprt and

peptidylprolyl isomerase A ( Ppia ) combined were used as reference

genes in all murine analyses except for the hepatocyte versus mac-

rophage comparison in which Ubc, B2m , and Tbp were additionally

applied. Primers detecting the murine chromosome 17 pericentro-

meric region were used as references in DNA qPCR analyses.

Cell Separation Hepatocytes and macrophages were isolated from Mdr2− /− mice

livers essentially as described by Kamimura and Tsukamoto ( 54 ).

Briefl y, livers were digested enzymatically with pronase and colla-

genase (Sigma) by in situ perfusion. Hepatocytes were isolated by cen-

trifugation at 50 × g for 2 minutes, and after three washes were frozen

immediately in liquid nitrogen for RNA preparation. Nonparenchy-

mal cells were pelleted by centrifugation at 150 × g for 8 minutes, laid

on top of a four-density gradient of Larcoll (Sigma) and centrifuged

at 20,000 rpm at 25°C for 30 minutes using a SW41Ti rotor (Beck-

man). Liver macrophages were recovered from the interface between

8% and 12% Larcoll, washed three times and immediately frozen in

liquid nitrogen. Purity of hepatocytes and macrophage fractions was

determined by H&E staining of cytospin preparations and always

exceeded 90%. Dissociation of cells from tumor xenografts was per-

formed using the gentleMACS dissociator (Miltenyi Biotec) accord-

ing to the manufacturer’s protocol.

Statistical Analysis Data were analyzed using a paired two-tailed Student t test at P <

0.05. Histologic differences were analyzed using the Pearson χ 2 test

at P < 0.05. Data were processed using Microsoft Excel 2007. Graphs

were generated using either GraphPad Prism 5.0 or Excel software.

Kaplan–Meier calculations and graphs were performed in GraphPad

Prism 5.0. Log-rank (Mantel–Cox) was used to determine survival P

value. Throughout the work, error bars represent 1 SEM.

Disclosure of Potential Confl icts of Interest R. Koschny has received travel grants from Bayer Company.

E. Pikarsky has fi led for a provisional patent application based on

this article. No potential confl icts of interest were disclosed by the

other authors.

Authors’ Contributions Conception and design: E. Horwitz, I. Stein, J. Hess, P. Angel,

Y. Ben-Neriah, E. Pikarsky

Development of methodology: E. Horwitz, I. Stein, M. Andreozzi,

R.M. Porat, M. Grunewald

Acquisition of data (provided animals, acquired and managed

patients, provided facilities, etc.): E. Horwitz, I. Stein, J. Nemeth,

A. Shoham, O. Pappo, N. Schweitzer, L. Tornillo, N. Kanarek, L. Quagliata,

F. Zreik, R.M. Porat, R. Finkelstein, R. Koschny, T. Ganten, C. Mogler,

O. Shibolet, K. Breuhahn, M. Grunewald, P. Schirmacher, A. Vogel,

L. Terracciano

Analysis and interpretation of data (e.g., statistical analysis,

biostatistics, computational analysis): E. Horwitz, A. Shoham,

O. Pappo, N. Schweitzer, L. Quagliata, H. Reuter, C. Mogler, O. Shibolet,

J. Hess, A. Vogel, L. Terracciano, P. Angel, Y. Ben-Neriah, E. Pikarsky

Writing, review, and/or revision of the manuscript: E. Horwitz,

I. Stein, N. Schweitzer, R. Koschny, T. Ganten, C. Mogler, O. Shibolet,

J. Hess, P. Schirmacher, P. Angel, Y. Ben-Neriah, E. Pikarsky

Administrative, technical, or material support (i.e., reporting or

organizing data, constructing databases): E. Horwitz, A. Shoham,

N. Kanarek, L. Quagliata, T. Ganten, J. Hess, P. Schirmacher, A. Vogel,

L. Terracciano

Study supervision: Y. Ben-Neriah, E. Pikarsky

Acknowledgments The authors thank Rivka Ben-Sasson, Reba Condioti, Shaffi ka El-

Kawasmi, Etti Avraham, Mohamad Juma’, and Drs. Hila Giladi, Gus-

tavo Mostoslavsky, David Curiel, Yosef Haviv, Shemuel Ben-Sasson,

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742 | CANCER DISCOVERY�JUNE 2014 www.aacrjournals.org

Horwitz et al.RESEARCH ARTICLE

and Sharon Elizur for providing expertise and reagents. The authors

also thank Drs. Jacob Hannah, Hidekazu Tsukamoto, Ofer Man-

delboim, Noam Stern-Ginosar, Noa Stanietsky, Rachel Yamin, Seth

Salpeter, Temima Schnitzer-Perlman, Dan Lehmann, Rachel Horwitz,

and Chamutal Gur for expert advice and kind assistance. The authors

are indebted to Dr. Daniel Goldenberg for supplying aged Mdr2 −/−

mice and are grateful to Drs. Christoffer Gebhardt, Robert Goldstein,

Moshe Biton, Zvika Granot, and Tzachi Hagai for fruitful discussions.

Grant Support The research leading to these results has received funding from

the European Research Council under the European Union’s Seventh

Framework Programme (FP/2007-2013)/ERC Grant Agreements

281738 to E. Pikarsky and 294390 to Y. Ben-Neriah; the Dr. Miriam

and Sheldon G. Adelson Medical Research Foundation (AMRF), the

German Research Foundation (DFG, SFB-TR77), the Cooperation

Program in Cancer Research of the Deutsches Krebsforschungszen-

trum (DKFZ), and Israel’s Ministry of Science, Culture and Sport

(MOST) to E. Pikarsky, Y. Ben-Neriah, and P. Angel; the Israel Sci-

ence Foundation (ISF) Centers of Excellence to E. Pikarsky and

Y. Ben-Neriah; and an ISF Project Grant to I. Stein and O. Pappo.

Received October 21, 2013; revised March 26, 2014; accepted

March 26, 2014; published OnlineFirst March 31, 2014.

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