chado

pub module outline

general (dbxref)

cv

pub

sequence

genetic

expression

map

pub module dependencies

Old FlyBase bibliography tables

• Simple:– A publication is

linked to the journal in which it appears

publication

journal

Some types of publications in FlyBase

• Book

• Journal

• Abstract

• Demonstration

• Film

• Interview

• Letter

• Meeting report

• Jigsaw puzzle

• Microfiche

• News article

• Obituary

• Personal communication

• Poem

• Press release

• Review

• Tactile diagram

Old FlyBase bibliography tables

• Didn’t really work for eg: – A personal

communication– A paper published in a

book published in a series of books

– Etc…publication

journal

recursive pub relationships in chado

pub

pub_relationship

cv

subjfk

obj fk

relationship typefk

cvpub typefk

• Allows any type of publication (not just journal -> paper) to be stored

• Downside: its recursive!