chapter 10 transcription rna processing translation jones and bartlett publishers © 2005
TRANSCRIPT
Terms (mRNA)
• primary transcript
• coding sequence (open reading frame, ORF)
• prokaryotic mRNA = primary transcript
• Eukaryotic transcripts are converted into mRNA through RNA processing:– Modification of the 5’ end– Extension of 3’ end– Excision of untranslated embedded sequences.
Polycistronic messages
• In bacteria and eukaryotic organelles, sometimes more than one polypeptide is encoded in a single message.
• These are called polycistronic mRNAs.
Eukaryotic Transcription
• In eukaryotes, three different polymerases are used.
• No polycistronic mRNAs are produced.
(All eukarytoic mRNAs are monocistronic.)
• The mRNA molecules are chemically modified in eukaryotes.
Eukaryotic RNA Polymerases
Enzyme Cellular location ProductRNA polymerase I Nucleolus rRNA
RNA polymerase II Nucleus mRNAsnRNA
RNA polymerase III Nucleus tRNA,5S
RNA, snRNA
Promoters for eukaryotic genes
• There is more variability in promoters and termination sequences.
• TATA box : 5’-TATAAA-3’, -25 bp, with GC regions near it.
• CAAT box: GCCAATCT, -80 bp
• GC box: GGGCGC, multiple copies.
Modification of primary transcripts
• Three major alterations to mRNA:
–Modified guanosine cap at 5’ end
– 3’ end gets a poly(A) tail.
– pre-mRNA is processed to remove specific internal sequences by splicing them out.
Polyadenylation
• The poly(A) tail is added by poly(A) polymerase.
• About 200 adenosines are added to the 3’ end of the primary transcript.
• Poly(A) tails help geneticists isolate mRNAs from cells.
RNA Splicing
• In the 1960s, it was observed that RNA molecules were larger than predicted, based on protein structure.
• In 1977, internal, non-coding sequences were discovered.
• These internal, non-coding sequences are called introns.
Spliceosomes and the GU-AG rule
• Intron-Exon junctions have a conserved sequence that is recognized by an enzyme complex (spliceosome).
• The sequence is GU-AG, and is almost universal.
• A spliceosome has nucleic acids, 8-10 proteins, and snRNAs.
Molecular details of the splicing of an intron
Introns begin with a GU and
end with an AG. There is also an
internal A nucleotide where the
branch junction is formed.
The spliced intron is known as a lariat (with a loop and tail).
Splicing of introns is mediated by small nuclear ribonucleoprotein particles (snRNPs)
In this diagram,
only the RNA component of the snRNPs
is shown. Base pairing
between snRNA and the intron is involved in the splicing
reaction.
DNA-RNA hybridization showing the parts of DNA that are missing from the mature mRNA and the part of the mRNA (polyA tail) missing in the DNA
Exon-shuffle model
• Introns may play a role in gene evolution.
• In some proteins, each exon has its own independent folding characteristics.
• Folding domains (=exons) can be grouped together to give new proteins with new functions.
• This is called the exon-shuffle model.
• Not all genes have domain boundaries that correlate to exons.
Transcription occurs in the nucleus, as does RNA processing.
Export to the cytoplasm happens before translation occurs.