chapter 16 infrared absorption spectroscopy an ir spectrum contains information about the functional...

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Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely identify the compound.

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Page 1: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Chapter 16

Infrared Absorption Spectroscopy

An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely identify the compound.

Page 2: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Wavenumbers (cm-1) are used since they are directly proportional to energy –

e.g. convert 2.5 µm to wavenumbers (cm-1)

λ

hchνE

400 nm 780 nm 2500 nm

or 4000 cm-1

50,000 nm

or 200 cm-1

UV Vis Near IR Mid IR Far IR

Page 3: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Typical Infrared Spectrum

Higher energy vibrations

C-H

“overtones”

C=O C-C

Page 4: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Mechanical Model of a Stretching Vibration in a Diatomic Molecule

μ

k

Treats the vibrating bond like a spring with a given “stiffness” --

n = frequency of vibration

k = force constant (spring “stiffness”)

µ = “reduced mass”

21

21

mm

mm

Page 5: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Quantum Mechanical Treatment of Normal Modes

1. Only certain vibrations are “allowed”

2. The vibrational quantum number v = 0, 1, 2, 3……

3. Only transitions between adjacent energy levels are possible, i.e. v = 1

4. The frequency of the photon has to equal the frequency of the vibration(see next slide)

5. The molecule must have a change in “dipole moment” as a result of the vibration

Dipole moment = charge difference X separation distance

Homonuclear diatomics never have an Infrared spectrum. Why?

+-

Page 6: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

+ + +

- -

+

--

+

IR Absorption if the vibration results in a change in dipole moment

Frequency of absorbed light frequency of vibrationFrequency of absorbed light frequency of vibration

So

S1

v = 1

Page 7: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Common Types of Vibrations (“Normal Modes”)

Higher energy modes

Lower energy modes

Page 8: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Example – predict the normal modes of CO2

The number of normal modes = 3N-6

For linear molecules it’s 3N-5

Page 9: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Which normal modes are Infrared active?

Page 10: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Example 16-1, p.436

Calculate the approximate wavenumber and wavelength of the fundamental absorption peak due to the stretching vibration of a C=O group (k = 1.0 x 103 N/m)

Page 11: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Force Constants increase with Bond Strength

Bond Type*

Force Constant,

k (N/m)

Wave-number (cm-1)

Bond Energy (kJ/mol)

C-C 5 x 102 800-1200 347

C=C 10 x 102 1600 620

CΞC 15 x 102 2100 812

Bond Type*

Reduced mass (kg)

Wave-number (cm-1)

Bond Energy (kJ/mol)

C-H 1.55 x 10-27 3000 414

C-N 1.07 x 10-26 1000-1350 276@

C-O 1.14 x 10-26 1000-1300 351@

* all bonds are stretches@ consider these as being approx. equal

(a).

(b)

μ

k

(a).as then frequency

(b) When masses approx. equal, then see peak at same wavenumbers

Page 12: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

IR Sources

1. Nichrome – Ni/Cr alloy, resistively heats up and emits IR, 1100 K

2. Globar – SiC rod, 1500 K

3. Nernst Glower – electrically heated rare earth-oxide ceramic, 2000 K

Output from a Nernst Glower

cm-1

Page 13: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Optics – IR spectra are measured in the mid-IR, so have to use halides such as NaCl and KBr

Never use aqueous samples, or water to clean

salt plates

400 nm 780 nm 2500 nm

or 4000 cm-1

50,000 nm

or 200 cm-1

UV Vis Near IR Mid IR Far IR

Page 14: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Sample Handling – a few drops of “neat” sample between “salt plates”

Page 15: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Solutions

Page 16: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Detectors for the Mid-IR – 200-4000cm-1

1. Pyroelectric – crystal of DTGS (Deuterated Triglyceine Sulfate)

Nice link:

http://www.doitpoms.ac.uk/tlplib/pyroelectricity/printall.php?question=2&type=1

1. DTGS maintains polarization when heated to just below the Curie Point

2. Above the Curie Point, the permanent polarization of the DTGS crystal disappears.

3. The closer to the Curie Point, the more responsive the detector

4. Much faster response so can take a spectrum much more quickly (FTIR)

Page 17: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Detectors for the Mid-IR – 200-4000cm-1

2. Photoconduction - Mercury-Cadmium-Tellurium (MCT)

http://www.newport.com

Liquid N2 @ 77K1. Semiconductor-based

2. Cooled to 77 K using liquid N2

3. Much faster response so can take a spectrum much more quickly (FTIR)

http://www.boselec.com/pdf/Laser_Focus_World.PDF

Page 18: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Definition of the Fourier Transform () -

dtetftf ti )()()( 1i f 2

The Inverse Fourier Transform -

detf ti)(2

1)()( 1

The functions f(t) and () are called "transform pairs"

f(t) ()

Page 19: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

time (t) frequency (s-1, Hz)

Page 20: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

e.g. FTIR

distance (cm) wavenumber (cm-1)

backgroundinterferogram

P/Po =IR spectrum

background spectrum = Po

sample spectrum = P

sampleinterferogram

Page 21: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

e.g. FT-NMR

time (s) ppm (Hz)

Free Induction Decay (FID) Signal (time)

NMR Spectrum (ppm, Hz)

Page 22: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Fourier Transforms "invert dimensionality" –

signal domain FT domain Instrument

time (t) frequency (s-1, Hz) oscilloscope

mirror wavenumber (cm-1) FTIRdistance (cm)

free induction ppm (from Hertz) FT-NMRdecay (t)

Fast Fourier Transform (FFT) on computers -

• Cooley-Tukey algorithm

• very efficient on a PC

Page 23: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

movable mirror →

D

fixed mirror

50/50 beamsplitter

IR source

mirror distance, x (cm) →

¼

interferogram

++

+--

-

/4 2 /4 3/4 4/4

Page 24: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

If polychromatic radiation enters the interferometer, then each wavelength produces a separate interferogram. The output from the interferometer will therefore be a superposition of all wavelengths -

1 1

mirror distance (+x, cm) →

2 2

3 3

←mirror distance (-x, cm)

Page 25: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

....4cos)(4cos)(4cos)( 332211 xAxAxAsignal atdetector S(x)

N

i

ii xA

1

4cos)(

dxA ii 4cos)(

this term contains the IR spectrum

Taking the Fourier Transform of S(x) results in the IR spectrum, A() -

dxxxSA i 4cos)()(

Page 26: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 27: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Depends on the distance the mirror moves in the Michelson Interferometer – the further it moves, the greater the resolution.

1

2

1

x

minimum detectable difference in wavenumber

x = distance mirror moves

e.g. What length of mirror drive in a Michelson Interferometer is required to separate 20.34 and 20.35 m?

"retardation“ = 2x

Page 28: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Fourier Transform Infrared (FTIR) Spectrometers

The Multiplex (Fellgett's) Advantage - entire spectrum obtained virtually instantaneously; results in a higher S/N because during the time a scanning instrument is slowly obtaining the spectrum, a multiplex instrument such as an FTIR can acquire 100’s pf spectra. Averaging these extra spectra causes the increased S/N (see next slide) and allows quantitative IR.

S/N increases as where N = number of "resolution elements"N

4000 cm-1400 cm-1

e.g. scan range 400 - 4000 cm-1 at a resolution of 2 cm-1

2 cm-1

18002

)4004000(1

1

cm

cmN "resolution elements"

so the S/N increases by IF the FTIR can obtain the entire spectrum for the same amount of time a slower, scanning instrument requires to acquire only one resolution element.

X401800

Page 29: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Signal-to-Noise Ratio (S/N)

Page 30: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Single-Beam – run background first (see next slide) and store in memory (Po)

Higher energy throughput (Jacquinot’s Advantage) and no stray light problems

Page 31: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Typical IR background spectrum (Po)

Page 32: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

inexpensive (~ $25K)

range = 350 – 7800 cm-1 (29 to 1.3 m)

max resolution = 4 cm-1

scan time = as fast as 1 sec

detector = DTGS

expensive (~ $100K)

range = 10 – 50,000 cm-1 (1000 m to 200 nm)

max resolution < 0.01 cm-1

scan time = can be minutes at high-res

detector(s) = DTGS, MCT

Page 33: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Advantages over Scanning Instruments

1. fast scan times

2. higher S/N because of signal averaging

3. higher resolution

4. because there are no slits, there’s a higher energy throughput (Jacquinot’s Advantage); means larger signals for the same concentration (therefore lower LODs)

5. no stray light problems

Disadvantages

6. higher cost than scanning instruments

7. difficult to align the interferometer (automation helps)

8. IR optics water soluble (beamsplitter made of KBr)

Page 34: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Chapter 17

Applications of IR Spectrometry

Page 35: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

1. Qualitative Analysis

Page 36: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

"fingerprint region""group frequency region"

Page 37: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 38: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 39: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 40: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 41: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 42: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

2. Quantitative Analysis

1. lower source powers than in UV-Vis (in FTIR Jacquinot's Advantage partially offsets)

2. detectors suffer from thermal noise (i.e. larger backgrounds or blank)

3. salt plates have a very short path length (A = bc)

Signal averaging with FTIR's has improved the S/N enough to allow more sensitive quantitative work in the IR.

Much less sensitive (i.e. higher LODs) in the IR compared to the UV-Visbecause of -

Page 43: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

3. Diffuse Reflectance Accessory

Page 44: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Typically used for powdered samples, i.e. forensic drug analyses

Page 45: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

Kubelka-Munk Units = converts the reflectance spectrum to the equivalent of an absorbance spectrum.

R’ = sample refectivity/KBr reflectivity

f(R’) = (1 - R’)2/2 R’ = k/S

k = 2.303 C

= the molar absorptivityC is the sample concentrationS = "scattering coefficient"

For a sample to follow a linear relationship between f(R’) and concentration, the following criteria must be met:

1. the sample must be diluted in a non-absorbing matrix such as KBr or KCl.2. the scattering coefficient S must remain constant over the entire spectrum.3. there must be no specular, or regular reflectance off the surface of the

sample.

Page 46: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

4. Attenuated Total Internal Reflectance (ATR) Accessory

Total Internal Reflection and the "evanescent wave" -

Samples - conventional (solutions, liquids, etc) as well as powders, pastes, suspensions, colloids

Page 47: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely

5. Infrared Microscopy

Page 48: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely
Page 49: Chapter 16 Infrared Absorption Spectroscopy An IR spectrum contains information about the functional groups in a molecule, and this is used to uniquely