chapter 2: chemical components of life living cells are not composed of atoms found only in them....
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Chapter 2: Chemical Components of Life
Living cells are not composed of atoms found only in them. But their compositionsdo differ from thenon-living environment on Earth.
Four atoms (Hydrogen, Carbon, Oxygen, and Nitrogen constitute 96% of living cells.
Fig. 2-4
Fig. 2-5
Chemistry Review - Atoms are most stable with full electron shells. - Inner shells fill first. - They can either donate/gain or share electrons to accomplish this.
Fig. 2-7
Periodic Table of Elements
Cells are composed of the lightest, most stable elements (share electrons that are located close to nucleus).
Atoms in vertical columns share properties
donate e-
gain e-
Covalent vs. Ionic Bonds
Fig. 2-6
can be sharedequally or non-equally
Fig. 2-7
Periodic Table of Elements
donate e-
gain e-
Electronegativity
Electronegativity (Attractive Force on Electrons)depends on: 1) # protons in nucleus and2) distance between protons and outer shell e-
C and H similarO and H very different
Ele
ctro
neg
ativ
ity
Characteristics of Some Chemical Bonds Found in Cells
Polar H2O Accounts for 70% Cell Weight
Fig. 2-14
determines behavior ofcellular molecules
Ionic Molecules
Polar Molecules
- contain mostly non-polar H-C bonds- cannot form H-bonds with H2O, so are not soluble in H2O
Panel 2-2e
Polar Covalent Bonds of H2OCan Dissociate
Fig. 2-15b
10-7 at pH 7.0
Acts as Acid in H2O (donates H+ to H2O)
Acts as Base in H2O (gains H+ from H2O)
N
H H
N H
H
amine group amine group hydroxyl ion(protonated)
Some Polar Covalent Bonds Can Donate or Gain H+ from H2O
Noncovalent BondsAre Important forAssociationsbetween Molecules in Cells
They’re weakness allows for transient, regulated associations.
Fig. 2-13
Complementarycharged faces interact
- contain mostly non-polar H-C bonds- cannot form H-bonds with H2O, so are not soluble in H2O
Panel 2-2e
Panel 2-7e
Fatty Acid Hydrocarbon Tails
Panel 2-4a
The hydrophobic effect causes nonpolar molecules to aggregate to avoid H2O
Macromolecules are Constructed of Covalently Linked Subunits
Fig. 2-28
Condensation Reactions Link Subunits into Macromolecular Polymers
Fig. 2-29
Fig. 2-18
Condensation Reactions Link Monosaccharides Into Polysaccharides
and polysaccharides
Nucleic Acids are Built Through Condensation Reactions Between Nucleotides
Fig. 2-24 & 2-26
Nucleotides Also Serve as Energy Storage Molecules
condensation hydrolysis
Fig. 2-25
Proteins Are Built of Amino Acid Subunits
SH
CH2
Panel 2-5e
Condensation Reactions Link Amino Acids intoPolypeptides through Peptide Bonds
Condensation reaction between Carboxyl group of one amino acid and amine group of second amino acid Peptide bond in red is planar and rigid and does not allow rotation.
Panel 2-5a
form H bondsparticipate in hydrophobic and Van der Waals interactions
form ionic bonds
Panel 2-5f
Panel 2-5b
Act as Acid (donates H+ to H2O)
Act as Base (gains H+ from H2O)
amine group wateramine group hydroxyl ion(protonated)
H
N H
H
Polar Charged Amino Acids Can Donate or Gain H+ from H2O
pK’:equilibrium pH
pK’:equilibrium pH
protonated deprotonated
N
H
H+ O H-
H
+ O H
protonateddeprotonated
deprotonated at pH 7.0
protonated at pH 7.0
- either
equilibrium
< protonated deprotonated >
Acids
Bases
either -
pK’ of Polar Charged R Groups
Panel 2-5h
Panel 2-5g
Noncovalent Bonds Are Also Crucial in Macromolecular 3D Folding and Assembly
Fig. 2-34