chi lab overviedavidc/pubs/mt2016_dac.pdf · computational health informatics (chi) laboratory...
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Prof. David A. Clifton
Associate Professor of Engineering Science
Computational Health Informatics (CHI) Laboratory
Governing Body Fellow – Balliol College
CHI Lab Overview
Michaelmas 2016
CALMS-2
Main study paper has been submitted to CCMed;
other related papers are in preparation
CALMS-3
Study paper is in preparation
CALMS-4
Currently specified as (i) examination of
clinical pathways for responding to deteriorating
patients, (ii) ambulatory monitoring of a subset
of patients with adverse outcomes
+1 PDRA @ IBME for system development
PICRAM (to November, 2016)
Main paper paused, waiting for patent filing
Anonymised database within Physionet(in discussion with Roger Mark)
HAVEN
Systematic reviews + protocol to be published
UAE Rhodes scholar – Farah Shamout
+1 PDRA @ KC/IBME, 3 yrs [currently advertised]
Deep Learning (MP research)
Exploratory analysis of ECG + activity
TensorFlow, Theano via Amazon
Gates Foundation (to September, 2017)
Acquisition of M. tuberculosis genomic data
Collaboration with CDCs from UK, USA, China, India
“100,000 TB genomes” project,
supported by Genomics England
IBME PDRA: Dr. Yang Yang (Shanghai Jiaotong)
Wellcome Trust (to September, 2020)
Machine learning methodology for handling hierarchical trees of
genomics data, predicting risk of antibiotic resistance
Students to be co-supervised with Danny Wilson (NDM)
+1 PDRA @ IBME, 4 yrs [to be advertised]
EPSRC HTCA (to September, 2021)
Fundamental ML for modelling time-series EHR data
Rhodes scholar: Drew Birrenkott (Trinity College)
Clarendon scholar: Glen Wright Colopy (St. Cross College)
EPSRC DTA: Sarah-Jane Rodgers (Balliol Lubbock Scholar)
+1 PDRA @ IBME, data analysis – fundamental methodology [to be advertised]
+1 PDRA @ IBME, data analysis – MIT eICU
with Prof. Roger Mark and Dr. Li-wei Lehman
[to be advertised]
Intelligent Sensors (to September, 2019)
Pushing algorithms into sensors: wristworn + earables
+1 PDRA @ IBME, machine learning, 3 yrs – Delaram Jarchi[recruited]
+1 PDRA @ IBME, signal processing, 2 yrs – Fernando Andreotti[recruited, Maarten de Vos’ group]
+1 PDRA @ IBME, systems integration, 2 yrs – TBC[to be re-advertised, Lionel Tarassenko’s group]
EPSRC NetworksPlus “FAST” (to September, 2020)
No recruitment at Oxford, networking + research budget
NERC, UNICEF (to September, 2018)
Fusing water and health data in Kenya
Handpumps + local health network data
LSI DTC: Farah Colchester (University College)
IBME PDRA: Dr. Stijn Luca (0.5 FTE, at KU Leuven)
DfID (to September, 2022)
Risk stratification for water & poverty in Bangladesh
Rhodes / UNICEF scholar: Heloise Greeff (Balliol College)
IBME PDRA: Dr. Achut Manandhar (Duke)
Dialysis (to September, 2020)
NIHR + EPSRC match-funded
Fundamental ML for multivariate time-series
IBME PDRA: Dr. Tingting Zhu
China Kadoorie Biobank (to September, 2018)
0.5 million participants, various ECG + EHRs
China Research Council: Yanting Shen (Trinity)
Immune Disease (to October, 2016)
“Oxford IBD Cohort”: rich EHR + genomic datasets
Rhodes scholar: Kate Niehaus (Trinity)
COPD (to September, 2017)
Analysis of EDGE data
EPSRC DTA: Peter Gyring
ASPIRE (to 2020)
Intelligent sensors in the home,
for COPD patients
+1 PDRA @ IBME, machine learning, 3 yrs
+1 PDRA @ IBME, signal processing, 3 yrs
+1 PDRA @ IBME, systems integration, 3 yrs