Upload File

chip seq workflow

prev
next
out of 22
Download Chip Seq Workflow

Upload: bennydice0077

Post on 09-Apr-2018

221 views

Category:

Documents


0 download

Report

TRANSCRIPT

  • 8/8/2019 Chip Seq Workflow

    1/22

  • 8/8/2019 Chip Seq Workflow

    2/22

  • 8/8/2019 Chip Seq Workflow

    3/22

  • 8/8/2019 Chip Seq Workflow

    4/22

  • 8/8/2019 Chip Seq Workflow

    5/22

  • 8/8/2019 Chip Seq Workflow

    6/22

  • 8/8/2019 Chip Seq Workflow

    7/22

  • 8/8/2019 Chip Seq Workflow

    8/22

  • 8/8/2019 Chip Seq Workflow

    9/22

  • 8/8/2019 Chip Seq Workflow

    10/22

  • 8/8/2019 Chip Seq Workflow

    11/22

  • 8/8/2019 Chip Seq Workflow

    12/22

  • 8/8/2019 Chip Seq Workflow

    13/22

  • 8/8/2019 Chip Seq Workflow

    14/22

  • 8/8/2019 Chip Seq Workflow

    15/22

  • 8/8/2019 Chip Seq Workflow

    16/22

  • 8/8/2019 Chip Seq Workflow

    17/22

  • 8/8/2019 Chip Seq Workflow

    18/22

  • 8/8/2019 Chip Seq Workflow

    19/22

  • 8/8/2019 Chip Seq Workflow

    20/22

  • 8/8/2019 Chip Seq Workflow

    21/22

  • 8/8/2019 Chip Seq Workflow

    22/22


ChIP-seq Theory

ChIP-seq - Peak Calling - Freie Universität · ChIP-seq Peter N. Robinson Gene Regulatory Networks ChIP-Seq XSET FDR MACS Q/C & IDR Big Picture ChIP-seq Peak Calling Peter N. Robinson

Analysis of ChIP-Seq Data

ChIP-seq analysis · ChIP-seq analysis J. van Helden, M. Defrance, C. Herrmann, D. Puthier, N. Servant, M. Thomas-Chollier, O.Sand Tuesday : quick introduction to ChIP-seq and peak-calling

PPARgamma in adipocyte differentiation - a ChIP-Seq case study · ChIP-Seq workflow To obtain a first overview of the data we recommend the use of the ChIP-Seq workflow which can

RNA-Seq / ChIP-Seq Analysis Workflow

SeqMonk RNA-seq and ChIP-seqAnalysis

April 2009 by SoftGenetics ChIP-Seq Analysis with NextGENe ... · NextGENe™ by SoftGenetics April 2009 ChIP-Seq Analysis with NextGENe Software Introduction ChIP-Seq studies are

Rna seq and chip seq

ChIP-seq analysis – D. Puthier

Chromatin Immunoprecipitation DNA Sequencing (ChIP-seq)

ChIP-seq Analysisbarc.wi.mit.edu/education/hot_topics/ChIPseq_2018/chip... · 2018. 8. 29. · ChIP-Seq overview Park, P. J., ChIP-seq: advantages and challenges of a maturing technology,

Introduction to ChIP-seq using High-Performance Computing ... · Describe best practices for designing an ChIP-seq experiment Describe steps in a typical ChIP-seq analysis workflow

ChIP-Seq & MDB-Seq Service - e-biogen.com

ChIP-seq - Data processing

BASIC CHIP-SEQ AND SSA TUTORIAL · 2017. 3. 24. · BASIC CHIP-SEQ AND SSA TUTORIAL In this tutorial we are going to illustrate the capabilities of the ChIP-Seq server using data

ChIP-seq Analysis - Massachusetts Institute of Technologybarc.wi.mit.edu/education/hot_topics/ChIPseq_2017/AnalysisofChIP... · Outline • ChIP-seq overview • Experimental design

ChIP-seq data: quality control, read mapping and peak calling · 2015. 8. 6. · ChIP-seq data: quality control, read mapping and peak calling Data included raw ChIP-seq reads of

ChIP-Enrich: gene set enrichment testing for ChIP-seq data

ChIP-seq Data Identifying Transcription Factor Binding ... · Did my ChIP-seq worked?-- Cross-Correlation score-- FRiP score • MACS2 (Model-based analysis of ChIP-seq) 1.Pre-alignment

ChIP-seq and related applications

AUTO HISTONE ChIP-seq KIT - diagenode.com · Auto Histone ChIP-seq kit The Auto Histone ChIP-seq kit was developed to enhance the utility of the ChIP procedure, allowing one to perform

ChIP-seq Methods & Analysis

ChIP-Seq: TB Example

ChIP-Seq Data Processing - Genes & Developmentgenesdev.cshlp.org/.../Supplemental_Materials.docx · Web viewshows ChIP-seq control experiments including inhibitor studies, validation

Tutorial - QIAGEN Bioinformatics€¦ · Four workflows: 1.RNA-Seq and IPA analysis workflow 2.RNA-Seq and IPA advanced analysis workflow 3.RNA-Seq analysis workflow 4.RNA-Seq analysis

ChIP Seq Presentation

Chip – Seq Peak Calling in Galaxy

A complete workflow for the analysis of full-size ChIP-seq

ChIP-Seq Concepts and Applications - Bioconductor · Figure 1 Protein-binding detection from ChIP-seq data. ( a) Main steps of the proposed ChIP-seq processing pipeline. ( b) Schematic

ChIP-seq Data Analysis

A step-by-step guide to ChIP-seq data analysis · 2014. 12. 1. · ChIP-seq pipeline •Bardet AF, He Q, Zeitlinger J, Stark A. (2011) A computational pipeline for comparative ChIP-seq

More on TF Motif Finding ChIP-chip / seq

EMBL Advanced Course RNA-Seq and ChiP-Seq Data Advanced Course RNA-Seq and ChiP-Seq Data Outline • Sequence alignment • Aligners • Recent development • Aligners’ usage •

ChIP-seq MBD-seq (MIRA-seq) BS-seq RNA-seq miRNA-seq