citations needed for the sum of all human knowledge aaas ... › pfigshare-u... · scientific open...
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[ citations needed ]
for the sum of all human knowledge
Dario Taraborelli@readermeter
AAAS 2017 • February 18, 2017
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What’s the single, most important ingredient of a
Wikipedia article?What’s the single, most important ingredient of a Wikipedia article?
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Interlanguage links
Infoboxes
Maps
Charts
References
Categories
Text
Images
Videos
Table of contents
Internal links
External links
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Interlanguage links
Infoboxes
Maps
Charts
References
Categories
Text
Images
Videos
Table of contents
Internal links
External links
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Top referrals to the literature (DOI lookups)
http://crosstech.crossref.org/2014/02/many-metrics-such-data-wow.html http://blog.crossref.org/2016/05/https-and-wikipedia.html
wikipedia.org
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Back et al. (2016) Int J Med Educ.7:267-273; doi: 10.5116/ijme.57a5.f0f5
Preferred resource for knowledge acquisition
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Most visited resource during public health crises
Heilman (2016) tinyurl.com/jfuyduv
Most used internet site in Liberia, Sierra Leone and Guinea for Ebola during 2014 outbreak
Greater than CNN, CDC and WHO
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The molecular origins of insulin go at least as far back as the simplest unicellular [[eukaryotes]].<ref name='LeRoith'>{{cite journal | vauthors = LeRoith D, Shiloach J, Heffron R, Rubinovitz C, Tanenbaum R, Roth J | title = Insulin-related material in microbes: similarities and differences from mammalian insulins | journal = Can. J. Biochem. Cell Biol. | volume = 63 | issue = 8 | pages = 839–49 | year = 1985 | pmid = 3933801 | doi = 10.1139/o85-106 }}</ref> Apart from animals, insulin-like proteins are also known to exist in Fungi and Protista kingdoms.
References in Wikipedia
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A bibliographic database to serve the sum of all knowledge?
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VisionTechnologyCommunityScaleLicensingIndependence
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Free knowledge base that anyone can edit
Launched in 2012
Integrated with Wikipedia and other sister projects
Statistics (February 2017)Over 25M itemsOver 130M statements
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Wikidata’s anatomy
https://www.wikidata.org/wiki/Wikidata:Introduction
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Wikidata’s anatomy
https://commons.wikimedia.org/wiki/File:Linked_Data_-_San_Francisco.svg [CC BY SA]
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Scientific open data in Wikidata
● All human, mouse genes and proteins (swissprot) ● All Gene Ontology terms● All Human Disease Ontology terms● All FDA approved drugs ● 109 reference microbial genomes
Mitraka et al (2015) Semantic Web Applications for the Life SciencesBurgstaller-Muelbacher et al (2016) DatabasePutman et al (2016) Database
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Scientific open data in Wikidata
Benjamin Good (2016) Opportunities and challenges presented by Wikidata in the context of biocuration http://tinyurl.com/hk9qrmz
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https://twitter.com/egonwillighagen/status/718474906858582016
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Let’s build a bibliographic database in Wikidata to serve the sum of all
knowledge!
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Berlin, 25-26 May 2016
https://meta.wikimedia.org/wiki/WikiCite_2016
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Rich bibliographic data models
https://www.wikidata.org/wiki/Q24685088
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Broad coverage of scholarly journals
twitter.com/Wikicite/status/791529065198915585
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2 million citation linksbetween scholarly papers
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The Zika corpus
Open citation graph layer
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
meta.wikimedia.org/wiki/WikiCite_2016/Report#The_Zika_corpus
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The Zika corpus
Encyclopedic layer
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The Zika corpus
Expert annotation layer
Encyclopedic layer
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The Zika corpus
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
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The Zika corpus
Open citation graph layer
Bibliographic metadata layer
Expert annotation layer
Encyclopedic layer
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all statements citing a New York Times article
most popular journals cited by statements of any item that is a subclass of economics
all statements citing the works of Joseph Stiglitz
all statements citing journal articles by physicists at Oxford University in the 1970s
all statements citing a journal article that was retracted
Answer complex questions involving sources and statements via SPARQL queriesmeta.wikimedia.org/wiki/WikiCite_2016/Report/Group_5
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Represent and analyze links between statements, authors, scientific outlets and funders
Zika virus • Q202864TAXON
has natural reservoir • P1605Aedes hensilli • Q14573674TAXON
stated in • P248Aedes hensilli as a potential vector of Chikungunya and Zika viruses • Q22330738SCIENTIFIC ARTICLE
funded by • P859Centers for Disease Control and Prevention • Q583725GOVERNMENT AGENCY
published in • P1433PLOS Neglected Tropical Diseases • Q3359737SCIENTIFIC JOURNAL
publisher • P123Public Library of Science • Q233358PUBLISHER
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wikicite{ }Vienna, May 23-25 2017
applications open through February 27
https://meta.wikimedia.org/wiki/WikiCite_2017
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Thank youAcknowledgmentsDaniel Mietchen, Jonathan Dugan, Lydia Pintscher, Cameron Neylon, James Hare, James Heilman, Magnus Manske, Egon Willighagen, the Gene Wiki team (especially Andrew Su, Andra Waagmeester, Tim Putman, Benjamin Good), the ContentMine team, the University of Chicago Knowledge Lab; all WikiCite 2016 participants and Wikidata Source Metadata project contributors; the WikiCite initiative funders, in particular: Carly Strasser, Josh Greenberg, Greg Boustead, Ginny Hendricks.
Image credits
Thomas Fabian, Vienna flickr.com/photos/126875359@N03/28210887335 [CC BY SA]
@WikiCite • @Wikidata • [email protected] • @readermeter