comparison of three methods for estimating species and ...€¦ · echo sounder data collected at...

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Comparison of three methods for estimating species and si e Comparison of three methods for estimating species and size iti f kfi h i ti f t l bl composition of rockfishes in acoustic surveys of untrawlable areas M difi d Remote Operated Vehicle (ROV) C. Rooper 1 , M. Martin 1 , J. Butler 2 , D. Jones 1 , T. Weber 3 , C. Wilson 1 , A. De Robertis 1 , M. Wilkins 1 , Modified Bottom Trawl Remote Operated Vehicle (ROV) C. Wilson , A. De Robertis , M. Wilkins , & M. Zimmermann 1 1 RACE Division, Alaska Fisheries Science Center, NMFS - Seattle, WA 2 FRD, Southwest Fisheries Science Center, NMFS – La Jolla CA 3 C t f C tl dO M i Ui N H hi D h NH Stereo Drop Camera (SDC) 3 Center for Coastal and Ocean Mapping, Univ New Hampshire Durham NH V Species Composition I Background and Need Species composition by height off seafloor V . Species Composition The number of rockfish species observed by each method were ROV = 10 l 9 I. Background and Need Rockfish constitute an important component of both marine ecosystems and commercial fisheries in Alaska. The biomass of some species including northern rockfish (Sebastes polyspinis) and 90% 100% Walleye pollock Unidentified rockfish redstripe Bottom Trawl = 9 SDC = 7 Th t f fi h t id tifi d t i b h th d in Alaska. The biomass of some species including northern rockfish (Sebastes polyspinis) and dusky rockfish (S. variabilis) is difficult to assess using bottom trawl surveys due to their propensity to aggregate in rocky high-relief (untrawlable) areas. They are also difficult to assess acoustically due to their near-bottom distribution. Thus, new methods to estimate the biomass of 70% 80% prowfish other rockfish The percentage of fish not identified to species by each method were ROV = 2.67% Bottom Trawl = 0.00% SDC 16 76% these rockfishes are needed. II Overall Project Goals 60% northern rockfish lingcod unidentified juvenile rockfish SDC = 16.76% The three methods agreed that fish observed in the water column were typically dusky rockfish, northern rockfish and at location adult Pacific ocean perch II. Overall Project Goals 1) Improve rockfish distribution and abundance estimates in untrawlable areas using quantitative echo sounder data collected at different acoustic frequencies 2) Characterize rockfish school morphology to improve classification of acoustic data by species 40% 50% juvenile POP harlequin rockfish rockfish, and at location adult Pacific ocean perch Fishes observed in highest abundance near the seafloor were harlequin rockfish, juvenile Pacific ocean perch, redstripe rockfish and lingcod 2) Characterize rockfish school morphology to improve classification of acoustic data by species using a newly developed fisheries multibeam sonar (Simrad ME70) 3) Develop methods to determine species and size composition of rockfishes in untrawlable areas 4) Compare rockfish species distribution and abundance between trawlable and untrawlable areas 20% 30% greenling dusky rockfish cod redstripe rockfish and lingcod All rockfish species were observed in untrawlable habitats, but only Pacific ocean perch, dusky rockfish and northern rockfish were also observed in trawlable habitats 4) Compare rockfish species distribution and abundance between trawlable and untrawlable areas III. Poster Objectives 0% 10% adult POP northern rockfish were also observed in trawlable habitats Differences in species composition among the methods was mostly the result of deployments in different habitats and locations Compare the ability of a remotely operated vehicle (ROV), a modified bottom trawl, and a stereo drop camera system (SDC) to address objective #3 above. These groundtruthing methods were compared in terms of: 1) hi bili di i i kfi h i ii Stereo camera (< 0.5 m) Stereo camera (< 1.0 m) Stereo camera (< 1.5 m) Stereo camera (< 2.0 m) Bottom Trawl (0 - 7 m) ROV (on seafloor) ROV (< 2.0 m) ROV (> 2.0 m) VI. Size Composition and locations 1) their ability to discriminate rockfish species composition, 2) their ability to estimate the size of rockfish targets, 3) the time necessary to collect and process the samples, and 4) t ti l bi i th i d i iti dt Sample sizes for length measurement varied among the three methods with the highest percentage of observed fish measured with the SDC 4) potential biases in the size and species composition data 0.50 0.60 Harlequin Rockfish ROV Trawl Percentage measured Species ROV Bottom trawl SDC Dusky rockfish 3.2% 9.3% 28.2% Harlequin rockfish 7.1% 17.8% 46.7% Pacific ocean perch 8 0% 100 0% 19 7% Length frequency distributions were similar among the ROV, bottom trawl and SDC There were significant differences in mean length among species between the bottom trawl and video methods for species except dusky rockfish IV. Methods We conducted an experimental acoustic survey for rockfishes in the Snakeheadarea of the Gulf of Alaska 0.30 0.40 Proportion per length bin Stereo camera Pacific ocean perch 8.0% 100.0% 19.7% Northern rockfish 25.0% 39.8% 17.6% -Mean forklengths from the ROV and SDC were smaller than the bottom trawl for harlequin rockfish, juvenile POP and northern rockfish -Mean forklengths were not significantly different between the ROV and SDC rockfishes in the Snakehead area of the Gulf of Alaska aboard the NOAA research vessel Oscar Dyson and the Commercial fishing vessel Epic Explorer. Acoustic data were collected with a multibeam sonar and scientific 0 00 0.10 0.20 P 45 50 were collected with a multibeam sonar and scientific echosounder at multiple frequencies along 14 parallel transects (1.2 nmi spacing). Smaller scale acoustic surveys were also conducted at locations where fish sign was 0.50 0.60 Dusky Rockfish 0.60 0.70 Northern rockfish 0.00 5-10 10-15 15-20 20-25 25-30 30-35 35-40 40-45 Forklength (cm) 0.60 0.70 juvenile POP and other rockfish ROV Trawl 35 40 ROV Bottom trawl Stereo camera were also conducted at locations where fish sign was observed. The ROV, bottom trawl and SDC were deployed at sites where fish sign was observed to groundtruth acoustic targets 0.30 0.40 rtion per length bin ROV Trawl Stereo camera 0.40 0.50 ion per length bin ROV Trawl Stereo camera 0.40 0.50 on per length bin Stereo camera 20 25 30 Forklength (cm) groundtruth acoustic targets. The ROV collected video and still images to identify species, and parallel lasers to determine fish length. The drop camera system used video to identify species and stereo optic methods to determine 0.10 0.20 Propo 0.10 0.20 0.30 Proporti 0.10 0.20 0.30 Proportio 10 15 length. The drop camera system used video to identify species and stereo optic methods to determine fish size. All fish captured in the trawl were identified to species and a subsample measured to fork or total length. 0.00 30-35 35-40 40-45 45-50 50-55 55-60 60-65 Forklength (cm) 0.00 5-10 10-15 15-20 20-25 25-30 30-35 35-40 40-45 45-50 Forklength (cm) 0.00 5-10 10-15 15-20 20-25 Forklength (cm) 0 5 dusky rockfish harlequin rockfish juvenile POP northern rockfish VII. Spatial Distribution Dusky and northern rockfishes occurred in the t l h ll b tt d th ( 140 ) Harlequin and juvenile rockfishes occ rred in shallo ntra lable areas Acoustic backscatter attributed to rockfishes The multibeam data indicated untrawlable areas Acoustic transect lines and groundtruth deployments water column over shallow bottom depths (<140 m) occurred in shallow, untrawlable areas was observed throughout the study area (green, yellow, red) and trawlable regions (blue) Scintillation index Adult POP occurred off the shelf break in deeper water (>140 m) Scintillation index 5 km ROV (5 deployments) Bottom trawl (6 deployments) SDC (9 deployments) VIII. Data Collection and Processing • The bottom trawl and SDC required ~ 1 hour per deployment, the ROV ~ 3.5 hours IX. Conclusions • The ability to discriminate rockfish species decreased from bottom trawl to ROV to SDC X. Continuing Research • Determine how close to the seafloor fish targets can be resolved from the bottom h i ti dt • Roughly 4 - 8 hours were needed to completely process each hour of video collected • SDC = Two hours to count fish and do habitat classification on each deployment = Two hours to measure up to 200 fish per deployment • All three methods identified similar size distributions of fish • the bottom trawl did not appear to sample the smallest fish • the percentage of potentially measureable fish for the ROV was less than the other methods echo in acoustic data • Need to apply species and size composition to calculate biomass of rockfish • Collect in-situ target strength using drop TS sytem (March) • ROV = Three to eight hours to do habitat classification, count fish, and measure fish per deployment (1.5 hours of video collected) B tt t ldt il d th i d <3h f i t • Video based methods can provide depth distribution relative to the seafloor • Fish behavior and fish-habitat associations can be resolved from the video methods Th lt h th t l ti f th it th d f dt thi d d th • Complete bottom typing analysis • Complete analysis of school size structure and characteristics XI Acknowledgements Th d f ddb h Al k Fi h i Si C dN hP ifi R hB d( j #810) Th k DC h Bottom trawl data were easily processed, catch required < 3 hours of processing per tow The results show that selection of the appropriate method for groundtruthing depends on the specific objectives, habitat types and species complexes that will be examined XI. Acknowledgements The study was funded by the Alaska Fisheries Science Center and North Pacific Research Board (project #810). Thanks to D. Carney, the crew of the F/V Epic Explorer and NOAA research vessel Oscar Dyson for their assistance in completing this research, and D. Murfin, S. Mau and K. Steirhoff of the SWFSC. The views expressed or implied here are those of the authors and do not necessarily reflect the policies of the National Marine Fisheries Service, NOAA, Department of Commerce. Contact info: [email protected] or (206) 526-4689

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Page 1: Comparison of Three Methods for Estimating Species and ...€¦ · echo sounder data collected at different acoustic frequencies 2) Characterize rockfish school morphology to improve

Comparison of three methods for estimating species and si eComparison of three methods for estimating species and size iti f kfi h i ti f t l blcomposition of rockfishes in acoustic surveys of untrawlable areas

M difi dRemote Operated Vehicle (ROV)

C. Rooper1, M. Martin1, J. Butler2, D. Jones1, T. Weber3, C. Wilson1, A. De Robertis1, M. Wilkins1,

Modified Bottom Trawl

Remote Operated Vehicle (ROV)

C. Wilson , A. De Robertis , M. Wilkins ,& M. Zimmermann11RACE Division, Alaska Fisheries Science Center, NMFS - Seattle, WA2FRD, Southwest Fisheries Science Center, NMFS – La Jolla CA3C t f C t l d O M i U i N H hi D h NH

Stereo Drop Camera (SDC)3Center for Coastal and Ocean Mapping, Univ New Hampshire – Durham NH

V Species CompositionI Background and Need Species composition by height off seafloorV. Species CompositionThe number of rockfish species observed by each method were

ROV = 10l 9

I. Background and NeedRockfish constitute an important component of both marine ecosystems and commercial fisheries in Alaska. The biomass of some species including northern rockfish (Sebastes polyspinis) and 90%

100%Walleye pollock

Unidentified rockfish

redstripe

Bottom Trawl = 9SDC = 7

Th t f fi h t id tifi d t i b h th d

in Alaska. The biomass of some species including northern rockfish (Sebastes polyspinis) and dusky rockfish (S. variabilis) is difficult to assess using bottom trawl surveys due to their propensity to aggregate in rocky high-relief (untrawlable) areas. They are also difficult to assess acoustically due to their near-bottom distribution. Thus, new methods to estimate the biomass of 70%

80%prowfish

other rockfish

The percentage of fish not identified to species by each method wereROV = 2.67%Bottom Trawl = 0.00%SDC 16 76%

y ,these rockfishes are needed.

II Overall Project Goals60%

northern rockfish

lingcod

unidentified juvenile rockfish

SDC = 16.76%

The three methods agreed that fish observed in the water column were typically dusky rockfish, northernrockfish and at location adult Pacific ocean perch

II. Overall Project Goals1) Improve rockfish distribution and abundance estimates in untrawlable areas using quantitative

echo sounder data collected at different acoustic frequencies2) Characterize rockfish school morphology to improve classification of acoustic data by species

40%

50%juvenile POP

harlequin rockfish

rockfish, and at location adult Pacific ocean perch

Fishes observed in highest abundance near the seafloor were harlequin rockfish, juvenile Pacific ocean perch,redstripe rockfish and lingcod

2) Characterize rockfish school morphology to improve classification of acoustic data by species using a newly developed fisheries multibeam sonar (Simrad ME70)

3) Develop methods to determine species and size composition of rockfishes in untrawlable areas4) Compare rockfish species distribution and abundance between trawlable and untrawlable areas

20%

30%greenling

dusky rockfish

cod

redstripe rockfish and lingcod

All rockfish species were observed in untrawlable habitats, but only Pacific ocean perch, dusky rockfish and northern rockfish were also observed in trawlable habitats

4) Compare rockfish species distribution and abundance between trawlable and untrawlable areas

III. Poster Objectives0%

10%adult POP

northern rockfish were also observed in trawlable habitats

Differences in species composition among the methods was mostly the result of deployments in different habitatsand locations

Compare the ability of a remotely operated vehicle (ROV), a modified bottom trawl, and a stereo drop camera system (SDC) to address objective #3 above. These groundtruthing methods were compared in terms of:1) h i bili di i i kfi h i i i

Stereo camera (<

0.5 m)

Stereo camera (<

1.0 m)

Stereo camera (<

1.5 m)

Stereo camera (<

2.0 m)

Bottom Trawl (0 - 7

m)

ROV (on seafloor)

ROV (< 2.0 m)

ROV (> 2.0 m)

VI. Size Composition

and locations1) their ability to discriminate rockfish species composition, 2) their ability to estimate the size of rockfish targets, 3) the time necessary to collect and process the samples, and 4) t ti l bi i th i d i iti d t

pSample sizes for length measurement varied among the three methods with the highest percentage of observed fish measured with the SDC

4) potential biases in the size and species composition data

0.50

0.60Harlequin Rockfish

ROV

Trawl

Percentage measuredSpecies ROV Bottom trawl SDCDusky rockfish 3.2% 9.3% 28.2%Harlequin rockfish 7.1% 17.8% 46.7%Pacific ocean perch 8 0% 100 0% 19 7%

Length frequency distributions were similar among the ROV, bottom trawl and SDC

There were significant differences in mean length among species between the bottom trawl and video methods for species except dusky rockfish

IV. MethodsWe conducted an experimental acoustic survey for rockfishes in the “Snakehead” area of the Gulf of Alaska

0.30

0.40

Prop

orti

on p

er le

ngth

bin

Stereo cameraPacific ocean perch 8.0% 100.0% 19.7%Northern rockfish 25.0% 39.8% 17.6%

-Mean forklengths from the ROV and SDC were smaller than the bottom trawl for harlequin rockfish, juvenile POP and northern rockfish-Mean forklengths were not significantly different between the ROV and SDC

rockfishes in the Snakehead area of the Gulf of Alaska aboard the NOAA research vessel Oscar Dyson and the Commercial fishing vessel Epic Explorer. Acoustic data were collected with a multibeam sonar and scientific 0 00

0.10

0.20

P

45

50

were collected with a multibeam sonar and scientificechosounder at multiple frequencies along 14 parallel transects (1.2 nmi spacing). Smaller scale acoustic surveys were also conducted at locations where fish sign was 0.50

0.60Dusky Rockfish

0.60

0.70Northern rockfish

0.00

5-10 10-15 15-20 20-25 25-30 30-35 35-40 40-45

Forklength (cm)

0.60

0.70

juvenile POP and other rockfishROV

Trawl

35

40

ROV Bottom trawl Stereo camera

were also conducted at locations where fish sign was observed. The ROV, bottom trawl and SDC were deployed at sites where fish sign was observed to groundtruth acoustic targets 0.30

0.40

rtio

n pe

r len

gth

bin

ROV

Trawl

Stereo camera

0.40

0.50

ion

per l

engt

h bi

n

ROV

Trawl

Stereo camera

0.40

0.50

on p

er le

ngth

bin

Stereo camera

20

25

30

Fork

leng

th (c

m)

groundtruth acoustic targets.

The ROV collected video and still images to identify species, and parallel lasers to determine fish length. The drop camera system used video to identify species and stereo optic methods to determine 0.10

0.20

Prop

o

0.10

0.20

0.30

Prop

orti

0.10

0.20

0.30

Prop

orti

o

10

15

length. The drop camera system used video to identify species and stereo optic methods to determine fish size. All fish captured in the trawl were identified to species and a subsample measured to fork or total length.

0.00

30-35 35-40 40-45 45-50 50-55 55-60 60-65

Forklength (cm)

0.00

5-10 10-15 15-20 20-25 25-30 30-35 35-40 40-45 45-50

Forklength (cm)

0.00

5-10 10-15 15-20 20-25

Forklength (cm)0

5

dusky rockfish harlequin rockfish juvenile POP northern rockfish

VII. Spatial Distribution Dusky and northern rockfishes occurred in the t l h ll b tt d th ( 140 )

Harlequin and juvenile rockfishes occ rred in shallo ntra lable areas

Acoustic backscatter attributed to rockfishes The multibeam data indicated untrawlable areas

Acoustic transect lines and groundtruth deployments

water column over shallow bottom depths (<140 m) occurred in shallow, untrawlable areas was observed throughout the study area(green, yellow, red) and trawlable regions (blue)

Scintillation index

Adult POP occurred off the shelf break in deeper water (>140 m)

Scintillation index5 km

ROV (5 deployments)

Bottom trawl (6 deployments)

SDC (9 deployments)

VIII. Data Collection and Processing• The bottom trawl and SDC required ~ 1 hour per deployment, the ROV ~ 3.5 hours

IX. Conclusions• The ability to discriminate rockfish species decreased from bottom trawl to ROV to SDC

X. Continuing Research• Determine how close to the seafloor fish targets can be resolved from the bottom

h i ti d t• Roughly 4 - 8 hours were needed to completely process each hour of video collected • SDC = Two hours to count fish and do habitat classification on each deployment

= Two hours to measure up to 200 fish per deployment

• All three methods identified similar size distributions of fish• the bottom trawl did not appear to sample the smallest fish• the percentage of potentially measureable fish for the ROV was less than the other methods

echo in acoustic data• Need to apply species and size composition to calculate biomass of rockfish• Collect in-situ target strength using drop TS sytem (March)p p p y

• ROV = Three to eight hours to do habitat classification, count fish, and measure fishper deployment (1.5 hours of video collected)

B tt t l d t il d t h i d < 3 h f i t

p g p y• Video based methods can provide depth distribution relative to the seafloor• Fish behavior and fish-habitat associations can be resolved from the video methods

Th lt h th t l ti f th i t th d f dt thi d d th

• Complete bottom typing analysis• Complete analysis of school size structure and characteristics

XI Acknowledgements Th d f d d b h Al k Fi h i S i C d N h P ifi R h B d ( j #810) Th k D C h

• Bottom trawl data were easily processed, catch required < 3 hours of processing per tow • The results show that selection of the appropriate method for groundtruthing depends on the specific objectives, habitat types and species complexes that will be examined

XI. Acknowledgements The study was funded by the Alaska Fisheries Science Center and North Pacific Research Board (project #810). Thanks to D. Carney, the crew of the F/V Epic Explorer and NOAA research vessel Oscar Dyson for their assistance in completing this research, and D. Murfin, S. Mau and K. Steirhoff of the SWFSC.

The views expressed or implied here are those of the authors and do not necessarily reflect the policies of the National Marine Fisheries Service, NOAA, Department of Commerce.Contact info: [email protected] or (206) 526-4689