computational chemistry molecular mechanics/dynamics f = ma quantum chemistry schr Ö dinger...
Post on 21-Dec-2015
217 views
TRANSCRIPT
Computational Chemistry
• Molecular Mechanics/DynamicsF = Ma
• Quantum Chemistry SchrÖdinger Equation
H = E
H E SchrÖdinger Equation
HamiltonianH = h2/2me)ii
2 i V(ri)ije2/rij
Wavefunction
Energy
Density-Functional Theory
Text Book: Density-Functional Theory for Atoms and Molecules
by Robert Parr & Weitao Yang
Hohenberg-Kohn Theorems
1st Hohenberg-Kohn Theorem: The external potential V(r) is determined, within a trivial additive constant, by the electron density (r).
Implication: electron density determines every thing.
2nd Hohenberg-Kohn Theorem: For a trial density (r),
such that (r)0 and ,
Implication: Variation approach to determine ground state energy and density.
2nd Hohenberg-Kohn Theorem: Application
Minimize Eν[ρ] by varying ρ(r):
under constraint: (N is number of electrons)
Then, construct Euler-Langrage equation:
Minimize this Euler-Langrage equation:
(chemical potential or Fermi energy)
Thomas-Fermi Theory
Ground state energy
Constraint: number of electrons
Using
:
Kohn-Sham Equations
/2
In analogy with the Hohenberg-Kohn definition of the universal function FHK[ρ], Kohn and Sham invoked a corresponding noninteracting reference system, with the Hamiltonian
in which there are no electron-electron repulsion terms, and for which the ground-state electron density is exactly ρ. For this system there will be an exact determinantal ground-state wave function
The kinetic energy is Ts[ρ]:
/2
For the real system, the energy functional
νeff(r) is the effective potential:
νxc(r) is exchange-correlation potential:
Density MatrixOne-electron density matrix:
Two-electron density matrix:
Thomas-Fermi-Dirac Theory
where, rs is the radius of a sphere whose volume is the effective volume of an electron;
The correlation energy:
At high density limit:
At low density limit:
where, rs is the radius of a sphere whose volume is the effective volume of an electron.
In general:
Xα method
If the correlation energy is neglected:
we arrive at Xα equation:
Finally:
Further improvements
General Gradient Approximation (GGA): Exchange-correlation potential is viewed as the functional of density and the gradient of density:
Meta-GGA:
Exchange-correlation potential is viewed as the functional of density and the gradient of density and the second derivative of the density:
Hyper-GGA: further improvement
The hybrid B3LYP methodThe exchange-correlation functional is expressed as:
where,
,
B3LYP/6-311+G(d,p) B3LYP/6-311+G(3df,2p)
RMS=21.4 kcal/mol RMS=12.0 kcal/mol
RMS=3.1 kcal/mol RMS=3.3 kcal/mol
B3LYP/6-311+G(d,p)-NEURON & B3LYP/6-311+G(d,p)-NEURON: same accuracy
Hu, Wang, Wong & Chen, J. Chem. Phys. (Comm) (2003)
Usage: interpret experimental results numerical experiments
Goal: predictive tools
Inherent Numerical Errors caused by
Finite basis setElectron-electron correlationExchange-correlation functional
How to achieve chemical accuracy: 1~2 kcal/mol?
First-Principles Methods
In Principle:DFT is exact for ground stateTDDFT is exact for excited states
To find:Accurate / Exact Exchange-Correlation Functionals
Too Many Approximated Exchange-Correlation Functionals
System-dependency of XC functional ???
][][][ XCXCexXC EEE
When the exact XC functional is projected onto an existing XC functional, it should be system-dependent
][/][][
][])[1(][
XCXC
XCexXC
EEa
EaE
:][XCE Existing Approx. XC functional
EXC[] is system-dependent functional of
Any hybrid exchange-correlation functional is system-dependent
][][][ XCXCexXC EEE
][][][][
][][][][][][][ 00
VMNCC
LYPCC
BeckeXX
HFX
SlaterXXC
EaEa
EaEaEaE
][])[1(][][
][][][])[1(][][][ 00
VMNCC
LYPCC
BeckeXX
HFX
SlaterX
exXC
EaEa
EaEaEaE
XC Functional
Exp. Database
Neural Networks
?][aNeural-Networks-based DFT exchange-correlation functional
Descriptors must be
functionals of electron density
v- and N-representability
We can minimize E[ρ] by varying density ρ, however, the variation can not be arbitrary because this ρ is not guaranteed to be ground state density. This is called the v-representable problem.
A density ρ (r) is said to be v-representable if ρ (r) is associated with the ground state wave function of Homiltonian Ĥ with some external potential ν(r).
v- and N-representability
For more information about N-representable density, please refer to the following papers. ①. E.H. Lieb, Int. J. Quantum Chem. (1983), 24(3), p 243-277. ②. J. E. Hariman, Phys. Rev. A (1988), 24(2), p 680-682.
cc cc
Basis set of GTFs STO-3G, 3-21G, 4-31G, 6-31G, 6-31G*, 6-31G**------------------------------------------------------------------------------------- complexity & accuracy
Minimal basis set: one STO for each atomic orbital (AO)
STO-3G: 3 GTFs for each atomic orbital3-21G: 3 GTFs for each inner shell AO 2 CGTFs (w/ 2 & 1 GTFs) for each valence AO 6-31G: 6 GTFs for each inner shell AO 2 CGTFs (w/ 3 & 1 GTFs) for each valence AO 6-31G*: adds a set of d orbitals to atoms in 2nd & 3rd rows6-31G**: adds a set of d orbitals to atoms in 2nd & 3rd rows
and a set of p functions to hydrogen Polarization Function
Diffuse/Polarization Basis Sets:For excited states and in anions where electronic densityis more spread out, additional basis functions are needed.
Polarization functions to 6-31G basis set as follows: 6-31G* - adds a set of polarized d orbitals to atoms in 2nd & 3rd rows (Li - Cl). 6-31G** - adds a set of polarization d orbitals to atoms in 2nd & 3rd rows (Li- Cl) and a set of p functions
to H Diffuse functions + polarization functions:6-31+G*, 6-31++G*, 6-31+G** and 6-31++G** basis sets.
Double-zeta (DZ) basis set: two STO for each AO
6-31G for a carbon atom: (10s12p) [3s6p]
1s 2s 2pi (i=x,y,z)
6GTFs 3GTFs 1GTF 3GTFs 1GTF
1CGTF 1CGTF 1CGTF 1CGTF 1CGTF (s) (s) (s) (p) (p)
Time-Dependent Density-Functional Theory (TDDFT)
Runge-Gross Extension: Phys. Rev. Lett. 52, 997 (1984)
Time-dependent system (r,t) Properties P (e.g. absorption)
TDDFT equation: exact for excited states
Yokojima & Chen, Chem. Phys. Lett., 1998; Phys. Rev. B, 1999
t
,hi
HK Theorem P. Hohenberg & W. Kohn, Phys. Rev. 136, B864 (1964)
Ground-state density functional theory (DFT)
First-principles method for isolated systems
Time-dependent DFT for excited states (TDDFT)
RG Theorem E. Runge & E. K. U. Gross, Phys. Rev. Lett. 52, 997 (1984)
r,tExcited state properties
rallsystem properties
Open Systems
particle
energy
H = HS + HB + HSB
Time-dependent density-functional theory for open systems
First-principles method for open systems?
properties system opent),r(ρD
A real function is said to be analytic if it possesses derivatives of all orders and agrees with its Taylor series in the neighborhood of every point.
Analyticity of basis functions
• Plane wave
• Slater-type orbital
• Gaussian-type orbital
• Linearized augmented plane wave (LAPW)
Is the electron density function of any physical system a real analytical function ?
D
(r)
Holographic electron density theorem for time-independent systems
• Fournais (2004)
• Mezey (1999)
• Riess and Munch (1981)
D(r) (r)system properties
Analytical continuati
on HK
D
(r)
Holographic electron density theorem for time-dependent systems
It is difficult to prove the analyticity for (r,t) rigorously!
D
(r,t)
D(r,t) v(r,t)system properties
Holographic electron density
theorem
X. Zheng and G.H. Chen, arXiv:physics/0502021 (2005);Yam, Zheng & Chen, J. Comput. Theor. Nanosci. 3, 857 (2006); Recent progress in computational sciences and engineering, Vol. 7A, 803 (2006); Zheng, Wang, Yam, Mo & Chen, PRB (2007).
Existence of a rigorous TDDFT for Open System
The electron density distribution of the reduced system determines all physical properties or processes of the entire system!
Auguries of Innocence
William Blake
To see a world in a grain of sand, And a heaven in a wild flower,
Hold infinity in the palm of your hand, And eternity in an hour...
Time-Dependent Density-Functional Theory
EOM for density matrix:
],[ hi
Time–dependent Kohn-Sham equation:
ieffiKSi tvh
ti
))(2
1( 2
Time-Dependent DFT for Open Time-Dependent DFT for Open SystemsSystems
Left electrode right electrode
system to solve
boundary condition
Poisson Equation with boundary condition via potentials at SL and SR
L R
Dissipation functional Q
(energy and particle exchange with the
electrodes)
Zheng, Wang, Yam, Mo & Chen, Phys. Rev. B 75, 195127 (2007)
Quantum kinetic equation for transport (EOM for Wigner function) (r,r’;t)=(R,;t) Wigner function: f(R, k; t) Fourier Transformation with R = (r+r’)/2; = r-r’
Our EOM: First-principles quantum kinetic equation for transport
Qhi
,
Very General Equation:Time-domain, O(N) & Open systems!
Quantum Dissipation Theory (QDT): Louiville-von Neumann Equation
where is the reduced density matrix of the system
Our theory: rigorous one-electron QDT
Qhi ],[
System: (5,5) Carbon Nanotube w/ Al(001)-electrodesSim. Box: 60 Carbon atoms & 48x2 Aluminum atoms
Xiamen, 12/2009
Color: Current StrengthYellow arrow: Local Current direction
Transient Current Density Distribution through Al-CNT-Al Structure
Carbon Nanotube
Al Crystal
Time dependent Density Func. Theory
Al Crystal
Transient current (red lines) & applied bias voltage (green lines) for the Al-CNT-Al system. (a) Bias voltage is turned on exponentially, Vb = V0 (1-e-t/a) with V0 = 0.1 mV & a = 1 fs. Blue line in (a) is a fit to transient current, I0(1-e-t/τ) with τ = 2.8 fs & I0
=13.9 nA. (b) Bias voltage is sinusoidal with a period of T = 5 fs. The red line is for the current from the right electrode & squares are the current from the left electrode at different times.
Vb = V0 (1-e-t/a)V0 = 0.1 mV & a = 1 fs
Switch-on time: ~ 10 fs
(a) Electrostatic potential energy distribution along the central axis at t = 0.02, 1 and 12 fs. (b) Charge distribution along Al-CNT-Al at t = 4 fs. (c) Schematic diagram showing induced charge accumulation at two interfaces which forms an effective capacitor.
Dynamic conductance calculated from exponentially turn-on bias voltage (solid squares) and sinusoidal bias voltage (solid triangle). The red line are the fitted results. Upper ones are for the real part and lower ones are for the imaginary part of conductance.
RL 7.39 kΩL 16.6 pHRc 6.45 kΩ (0.5g0
-1)C 0.073 aF
g0=2e2/h
≈ 18.8 pH LRh
L ~Q/V = 0.052 aF
2e
hd~
Buttiker, Thomas & Pretre, Phys. Lett. A 180, 364 (1993)
Science 313, 499 (2006)