density functional theory study and vibrational...
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81
CHAPTER – IV
DENSITY FUNCTIONAL THEORY STUDY AND
VIBRATIONAL ANALYSIS OF FT-IR AND
FT-RAMAN SPECTRA OF N-HYDROXYPHTHALIMIDE
4.1 INTRODUCTION
Phthalimide and its derivatives are very important compounds.
They are used in the synthesis of antimicrobial activity, antiandrogens and
other agents for treating tumour necrosis factor. Certain phthalimide
derivatives are used as herbicides and for reducing bacterial
contamination. On industrial side, they are acting like bleaching
detergents, anion exchange resins, antidepressants, heat resistant
polymers, flame-retardants, etc.[105]. Consideration of all these factors
led to undertake a detailed infrared and Raman spectral studies and
vibrational assignments of N-hydroxyphthalimide.
The vibrational wavenumbers obtained by quantum chemical
calculations are typically larger than their experimental counterparts[63]
and they have to be scaled by empirical scaling factors ranging from 0.8
to 1.014. These scaling factors are determined from the mean deviation
between the calculated and experimental wavenumbers[106-108]. The
aim of this work is to predict the vibrational spectra of
N-hydroxyphthalimide by applying the density functional theory (DFT)
calculations based on Beck3-Lee-Yang-Parr (B3LYP) level with the use of
the standard 6-31G* basis set. The calculated vibrational wavenumbers
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were compared with obtained experimental results and simulated and
observed spectra were also analysed in detail.
4.2 EXPERIMENTAL DETAILS
Spectroscopically fine samples of N-hydroxyphthalimide is obtained
from Lancaster Chemical Company, UK, and used as such without further
purification for the spectral measurements. The room temperature
Fourier transform infrared spectra of the title compound is measured in
the region 4000–400 cm-1, at a resolution of ±1cm -1, using BRUCKER IFS
66V vacuum Fourier transform spectrometer, equipped with an MCT
detector, a KBr beam splitter and globar source. Fourier transform Raman
spectra of the title compound is measured in the range of 4000 – 50 cm-1,
using Bruker RFS 100/S FT-Raman spectrometer.
4.2 COMPUTATIONAL DETAILS
Density functional theory calculation was carried out by means of
the 2003 version of the GAUSSIAN suit of program package[73] with
B3LYP level and the standard 6-31G* basis set[71,72] The normal grid
(50, 194) was used for numerical integration. The Cartesian
representation of the theoretical force constants has been computed at
the fully optimized geometry by assuming Cs point group symmetry,
scaling of the force fields were performed by the scaled quantum
mechanical procedure.
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LYBB
ijji
scaled
ji FccF32
1
)( …(4.1)
Where Ci is the scale factor of coordinate i, F i j B3LYP is the
B3LYP/6-31G* force constant in the local internal coordinates, and F ijscaled
is the scaled force constant. The multiple scaling of the force constants
was performed by the quantum chemical method with selective scaling in
the local symmetry coordinate representation[109] using transferable
scale factors available in the literature[110]. The transformation of force
field from Cartesian to symmetry coordinate, the scaling, the subsequent
normal coordinate analysis, calculations of total energy distribution (TED),
IR and Raman intensities were done on a PC with the version V7.0-G77
of the MOLVIB program written by Sundius[87,111]. To achieve a close
agreement between observed and calculated, the least square fit
refinement algorithm was used to recalculate the normal modes, TED and
the corresponding theoretically expected IR intensities.
The prediction of Raman intensities was carried out by following the
procedure outlined below. The Raman activities (S i) calculated by the
Gaussian–2003 program and adjusted during scaling procedure with
Molvib were converted to relative Raman intensities (I i) using the following
relationship derived from the basic theory of Raman scattering.
)2...(..........)/exp(1
)( 4
kThc
SfI
ii
iioi
Where 0 is the exciting (in cm-1 units), i is the vibrational
wavenumber of the ith normal mode, h, C and k are fundamental
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constants, and f is a suitably chosen common normalization factor for all
peak intensities.
4.4 RESULTS AND DISCUSSION
4.4.1 Molecular structure and symmetry
The labeling of atoms of the title compounds is shown in Fig.4.1.
The optimized geometrical parameters are presented in Table 4.1. The
global minimum energies obtained by the DFT structure optimization for
the title compound is –588.243143183 Hartrees for B3LYP/6-31G* basis
set. N-hydroxyphthalimide belong to Cs point group symmetry. With 17
atoms composing each structure, each molecule has 45 fundamental
modes of vibrations. For molecules of Cs symmetry, group theory
analysis indicates that the 45 fundamental vibrations will reduce as:
vib = 31A। (in-plane)+ 14A॥ (out-of-plane). From the structural point of
view of the molecules N-hydroxyphthalimide have 18 stretching vibrations,
13 in-plane bending vibrations and 14 out-of-plane bending vibrations.
4.4.2 Assignment of spectra
Detailed description of vibrational modes can be given by means of
normal coordinate analysis. For this purpose, the full set of 66 standard
internal coordinates containing 21 redundancies were defined as give in
Table 4.2. From these, a non-redundant set of local symmetry
coordinates were constructed by suitable linear combinations of internal
coordinates following the recommendations of Pulay et al[112] and they
are presented in Table 4.3. The theoretically calculated density functional
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theory force fields were transformed to this latter set of vibrational
coordinates and used in all subsequent calculations.
The observed and calculated wavenumbers and normal mode
descriptions for the title compound are reported in Tables 4.4. The
observed and simulated IR spectra of N - hydroxyphthalimide are
presented in Fig. 4.2 and the observed and simulated Raman spectra of
N - hydroxyphthalimide are presented in Fig.4.3. When using
computational methods to predict theoretical normal vibrations for
relatively complex polyatomics, scaling strategies are used to bring
computed wavenumbers into closer agreement with observed
wavenumbers. For the DFT method employed in this work the simplest
limiting scaling strategy was used.
The average difference between unscaled wavenumbers and
observed wavenumbers for N-hydroxyphthalimide was approximately
13.46 cm-1. In order to reproduce the observed wavenumbers, refinement
of scaling factors were applied and optimized via least square refinement
algorithm which resulted an average difference of 6.69 cm-1 between the
experimental and scaled quantum mechanical (SQM) wavenumbers for
6-31G* basis set.
All vibrational assignments are based on the respective point group
symmetry for each molecule. Assignments were made through
visualization of the atomic displacement representations for each
vibration, viewed through GAUSSVIEW[113] and matching the predicted
normal wavenumbers and intensities with experimental data. It is
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convenient to discuss the vibrational spectra of N-hydroxyphthalimide in
terms of characteristic spectral regions as described below.
4.4.3 C–H Vibrations
Aromatic compounds commonly exhibit multiple weak band in the
region 3100–3000 cm-1 due to aromatic C–H stretching vibrations. The
bands due to C–H in-plane ring bending vibrations, interacting somewhat
with C–C stretching vibrations, are observed as a number of medium and
weak intensity sharp bands in the region 1300–1000 cm-1. The C–H out-
of-plane bending vibrations are strongly coupled vibrations and occur in
the region 900–667 cm-1. Hence, the bands appeared at 3170, 3166,
3156, and 3144 cm-1 in the title compound have been assigned to C–H
stretching vibrations. The in-plane and out-of-plane bending vibrations of
C–H group have also been identif ied for the title compound and they are
presented in Table 4.4.
4.4.4 C=O Vibrations
The carbonyl stretching is very sensitive to the factors that disturb
the nature of the carbonyl group and its precise is characteristic of the
type of the carbonyl compound being studied. Particularly detailed
correlations have been made for the carbonyl bond stretching . The
carbonyl stretching has been most extensively studied by infrared and
Raman spectroscopy. This multiply bounded group is highly polar and
therefore gives rise to an intense infrared absorption band. The carbon-
oxygen double bond is formed by the p –p bonding between carbon and
oxygen. Because of the different electro-negativities of carbon and
oxygen atoms, the bonding electrons are not equally distributed between
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the two atoms. The following two resonance forms contribute to the
bonding of the carbonyl group C=O C+ – O –.
The lone pair of electrons on oxygen also determines the nature of
the carbonyl group. The position of the C=O stretching vibration is very
sensitive to various factors, such as the physical state, electronic effects
by substituents, ring strains, etc.[1] Consideration of these factors
provides further information about the environment of the C=O group.
The carbonyl stretching generally occurs as a strong absorption in the
region from 1730 to 1645 cm -1. This portion of the infrared and Raman
spectrum is most useful because the position of the carbonyl absorption is
quite sensitive to substitution effects and the geometry of the molecule.
In the present investigation, the peaks identified at 1775 cm -1 have been
assigned to C=O stretching vibrations.
4.4.5 C–N Vibrations
The identification of C–N vibrations is a difficult task since the
mixing of vibrations is possible. However, with the help of force field
calculations the C–N vibrations are identified and assigned in this study.
The bands appearing at 1336, 1367 and 1431 cm -1 were designated to
C–N stretching vibrations. The assignments of C–N in-plane and out-of-
plane bending vibrations made in the study were also supported by the
literature[114,115].
4.4.6 C–C vibrations
Benzene has two degenerate modes, e2g (1596 cm-1) and e1u
(1485 cm-1), and two non-generate modes, b2u (1310 cm-1) and a1g
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(995 cm-1), due to skeleton stretching of C–C bonds. Bands between
1400 and 1650 cm-1 are assigned to these modes. The actual positions
are determined not so much by the nature of the substituents, but by the
form of substitution around the ring. All the wavenumbers except that of
the ring breathing mode (995 cm-1) remain practically unaffected by
substitution. In this study, the bands observed in FT-IR and FT-Raman at
1614, 1516 and 1501 cm-1 are assigned to C=C stretching vibrations[105].
The in-plane and out-of-plane bending vibrations of carbon atoms are
found in the respective characteristic region and they are listed in
Table 4.4.
4.4.7 O–H and N–O Vibrations
Because of greater electro negativity of oxygen than nitrogen the
O–H stretching results in greater change in bond moment. The O–H
stretching vibrations normally occur in the region 3500-3600cm-1 of
infrared spectrum. In the title compound, the infrared bands identified at
3476 cm-1 is designated to O–H stretching vibrations. The bands
identified at 270 and 185 cm-1 in Raman spectra are described to the
wagging vibration of N–O.
4.4.8 Ring Vibrations
The ring stretching, in-plane and out-of-plane bending vibrations
have been identified and presented in Table 4.4. They are also supported
by literature[116].
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4.5 CONCLUSION
The DFT based SQM approach provides the most reliable
theoretical information on the vibrational properties of medium-size
molecules. Based on that force field obtained by density functional theory
calculations at B3LYP/6-31G* level, the vibrational wavenumbers, infrared
intensities and Raman activities were calculated and a complete
vibrational analysis of the title compound has been carried out.
Refinement of scaling factors applied in this investigation achieved a
weighted rms deviation of 6.69 cm-1 between the experimental and SQM
wavenumbers.
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Table 4.1 Optimized geometrical parameters of N-hydroxyphthalimide
obtained by B3LYP/6-31G* density functional calculations
Parameters Bond length of
N-HPh (Å) Parameters
Bond angle of
N-HPh (0)
C1–N2 1.4733 C1–N2–C3 115.19
N2–C3 1.4733 N2–C3–C4 102.89
C3-C4 1.5387 C3–C4–C5 109.37
C4-C5 1.3783 C4–C5–C6 121.56
C5–C6 1.3913 C5–C6–C7 117.43
C6–C7 1.4110 C6-C7-C8 121.03
C7–C8 1.4205 C7–C8–C9 121.09
C8–C9 1.4110 N2–C1–O10 122.86
C1–O10 1.2584 C1–N2–O11 121.04
N2-O11 1.3600 C3–N2–O11 123.77
C3–O12 1.2584 N2–C3–O11 126.99
C9–H13 1.0700 C4–C3–O12 130.11
C8–H14 1.0700 C8–C9–H13 121.67
C7–H15 1.0700 C7–C8–H14 119.41
C6–H16 1.0700 C9–C8–H14 119.49
O11–H17 0.9600 C6–C7–H15 119.51
C8–C7–H15 119.46
C5–C6–H16 120.99
C7–CH–H16 121.57
N2–O11–H17 101.47
N-HPh: N-hydroxyphthalimide
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Table 4. 2
Definition of internal coordinates of N-hydroxyphthalimide
No. Symbol Type Definition
Stretching
1-4 ri C–H C6–H16, C7–H15, C8–H14, C9–H13
5 Ri N–O N2–O11
6-7 pi C–N C1–N2, C3–N2
8-9 qi C=O C3–O12, C1–O10
10-7 Qi C–C C3–C4, C4–C5, C5–C1, C4–C9, C9–C8,
C8–C7, C7–C6, C6–C5
18 i O–H O11–H17
Bending
19-26 i C–C–H C7–C6–H16, C5–C6–H16, C8–C7–H15,
C6–C7–H15, C9–C8–H14, C7–C8–H14,
C4–C9–H13, C8–C9–H13
27-28 i C–C=O C4–C3–O12, C5–C1–O10
29-30 i N–C=O N2–C3–O12, N2–C1–O10
31-32 i C–N=O C1–N2–O11, C3–N2–O11
33-37 i Ring C1–N2–C3, N2–C3–C4, N2–C1–C5,
C3–C4–C5, C4–C5–C1
38-43 i Ring C4–C5–C6, C6–C7–C8, C8–C9–C4,
C5–C6–C7, C7–C8–C9, C9–C4–C5
44 i N–O–H N2–O11–H17
Torsion
45-48 i C–H H16–C6–C7–C5, H15–C7–C8–C6,
H14–C8–C9–C7, H13–C9–C8–C4
49-50 i C=O O12–C3–C4–N2, O10–C1–C5–N2
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51 i N–O O11–N2–C3–C1
52-56 i Ring C1–C5–C4–C3, C1–N2–C3–C4,
C5–C1–N2–C3, C4–C5–C1–N2,
N2–C3–C4–C5
57-62 I Ring C4–C5–C6–C7, C6–C7–C8–C9,
C8–C9–C4–C5, C5–C6–C7–C8,
C7–C8–C9–C4, C9–C4–C5–C6
63-64 Butterfly C6–C5–C4–C3, C9–C4–C5–C1
65-66 i O–H C1–N2–O11–H17, C3–N2–O11–H17
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Table 4.3
Definition of local symmetry coordinates used to correct the B3LYP/6-31G*
force field for N-hydroxyphthalimide.
No. Symbol Definition
1-4 CH r1, r2, r3, r4
5 NO R5
6-7 CN p6,p7
8-9 CO q8, q9
10-17 CC Q10, Q11, Q12, Q13, Q14, Q15, Q16, Q17
18 OH 18
19-22 bCH ( 19 – 20)/ 2 , ( 21 – 22)/ 2 ,
( 23 – 24)/ 2 , ( 25 – 26)/ 2
23-24 bCO ( 27 – 29)/ 2 , ( 28 – 30)/ 2
25 bNO ( 31 – 32)/ 2
26 Ring 1 33 + a( 34 + 37) + b ( 35 - 36)
27 Ring 2 (a – b) ( 34 – 37) + (1 – a) ( 35 – 36)
28 Ring 3 ( 38 – 39 + 40 – 41 + 42 – 43 )/ 6
29 Ring 4 (– 38 – 39 + 2 40 – 41 + 42 – 2 43)/ 12
30 Ring 5 ( 38 – 39 + 41 – 42)/2
31 bNOH 44
32-35 CH 45, 46, 47, 48
36-37 CO 49, 50
38 NO 51
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39 t Ring 1 b ( 52 + 56) + a ( 53 + 55) + 54
40 t Ring 2 (a – b) ( 56 – 52) + (1 – a) ( 55 – 53)
41 t Ring 3 ( 57 – 58 + 59 – 60 + 61 + 62)/ 6
42 t Ring 4 ( 57 – 58 + 60 – 62)/2
43 t Ring 5 (– 57 + 2 58 – 58 – 60 + 2 61 – 62)/ 12
44 Butterfly ( 63 - 64)/ 2
45 tOH 45
A = cos 144o and b = cos 72o.
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Table 4.4
Assignment of fundamental vibrations of N-hydroxyphthalimide by normal mode analysis based on SQM force field calculations
No. Symmetry Species
Observed
Wavenumber (cm-1)
Calculated
wavenumber (cm-1), B3LYP/6-31G*
force field
IRa Ai
Ramanb Ii
TED (%) among types of internal coordinatesc
IR Raman Unscaled Scaled
1 A' 3476 - 3574 3476 59.431 90.776 OH (100)
2 A' 3190 - 3225 3170 8.995 251.275 CH (99)
3 A' 3158 - 3221 3166 5.083 23.965 CH (99)
4 A' 3148 - 3210 3156 8.319 121.528 CH (99)
5 A' 3140 3142 3198 3144 1.815 63.024 CH (99)
6 A' 1833 - 1859 1837 130.825 91.132 CO (79), bRing A (9), CC (5), CN (5)
7 A' 1782 1779 1797 1775 566.596 24.628 CO (81), bRing A (6) CC (6), CN (5)
8 A' 1623 - 1665 1623 14.401 21.048 CC (63), bCH (20), bRingB (10), bRingA(6)
9 A' 1607 1606 1660 1614 0.347 4.101 CC (66), bCH (24), bRingB (8)
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10 A' 1569 - 1534 1567 172.835 10.8 bNOH (83), CN (7)
11 A' 1513 - 1510 1516 5.415 5.489 bCH (67), CC(28)
12 A' 1500 - 1504 1501 9.924 0.161 bCH (56). CC(39)
13 A' 1430 - 1435 1431 26.821 44.093 CN (32), NO (28), bCO (14), bRingA (11)
14 A' 1363 - 1400 1367 13.489 3.336 CC (71), bCH (21)
15 A' 1342 - 1319 1336 1.174 0.868 bCH (57), CC (22), bRingA (14)
16 A' 1206 - 1213 1203 4.721 5.146 bCH (57), CC(41)
17 A' 1188 1186 1194 1182 41.025 10.125 CC (43), bCH(22), CN (16), bRingB (9)
18 A' 1172 1170 1190 1175 62.235 58.796 CC (73), bCH (13), NO (5)
19 A' 1136 1137 1142 1139 107.031 1.605 CN (59), bNOH (10), bNO (9), bRingB (8)
20 A' 1080 - 1099 1077 11.154 1.118 bRingB (43), CC (37), bCH (11), CN (6)
21 A' 1018 1014 1044 1024 29.74 20.994 CC (56), bCH (17), NO (14), bCO (7)
22 A" 1008 - 1004 1011 0.011 0.03 CH (84), tRingB (16)
23 A' - 977 992 975 64.773 11.697 CC (48), NO (28), bCO (13), CN (7)
97
24 A" 974 - 968 970 1.157 1.104 CH (92), tRingB (7)
25 A" 911 - 909 915 0.025 3.621 CH (91), tRingB (8)
26 A' 880 - 893 887 48.017 2.517 bCO (37), bRingB(27), CC (16), CN (8)
27 A" 781 - 788 781 36.669 0.965 CH (93)
28 A" 753 - 758 749 1.006 0.18 tRingB (68), CO (16), tRingA (14)
29 A' 711 710 717 709 2.664 0.152 bRingB (53), bCO (26), CC (12)
30 A' 698 - 713 700 5.523 15.392 bRingB (46), CC (34), CN (8)
31 A" 669 - 677 671 6.527 0.163 tRingB (64), CO (22), CH (10)
32 A" 645 - 670 647 49.808 2.943 CO (50), tRingA (35), NO (7)
33 A' 606 602 609 609 0.292 10.602 bRingA (56), bRingB (18), CN (13), CO (5)
34 A' 521 - 525 522 12.96 1.003 bRingA (53), CC (17), bRingB (13), CN (12)
35 A' - 478 470 469 1.185 0.515 tRingB (74), CH (10), tRingA (9), gCO (7)
36 A" 475 - 469 462 1.1331 5.101 CC (32), bRingB (25), NO (14), bRingA(11)
37 A" - 408 409 412 0.237 0.023 tRingB (80), CH (11)
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38 A' - 347 331 331 14.267 2.653 bCO (56), CC (20), CN (10), bRingB (6)
39 A" - 303 284 302 100.962 6.1 tOH (77), CO (14), tRingA (5)
40 A' - 272 261 270 13.528 1.387 bNO (61) bCO (24), bRingA (8)
41 A' - 235 238 235 0.932 1.22 bRingB (38), CC (32), bCO (16), bRing A(5)
42 A" - 184 203 185 5.374 0.855 NO (56), tOH (16), tRingA (7), CO (7)
43 A" - 154 140 141 0.69 2.037 tRingA (55), tRingB (33), CO (7)
44 A" - 106 119 103 0.454 1.801 tRingA (51)
45 A" - 83 87 85 0.996 0.061 tRingA (51), NO (48)
Abbreviations: : stretching; b: bending; : wagging; t: torsion
a Relative absorption intensities normalized with highest peak absorption.
b Relative Raman intensities calculated by Eq.4.1
c For the notations used see Table 4.3.