Aquatic Sciences Publications2014

Scientific Papers

Alleway, H.K., Connell, S.D., Ward, T.M., and Gillanders, B.M. (2014). Historical changes in mean trophic level of southern Australian fisheries. Marine and Freshwater Research, 65(10), 884-893.

Bansemer, M.S., Harris J.O., Qin, J.G., Duong, D.N. and Stone D.A.J. (2014). Growth and feed utilisation of juvenile greenlip abalone (Haliotis laevigata) in response to water temperatures and increasing dietary protein levels. Aquaculture, 436, 13-20.

Baumgartner, L., Zampatti, B., Jones, M., Stuart, I. and Mallen-Cooper, M. (2014). Fish passage in the Murray-Darling Basin, Australia: not just an upstream battle. Ecological Management and Restoration, 15(s1), 28–30.

Beckmann C.L., Mitchell, J.G., Stone, D.A. and Huveneers, C. (2014). Inter-Tissue differences in fatty acid incorporation as a result of dietary oil manipulation in Port Jackson Sharks (Heterodontus portusjacksoni). Lipids, 49(6), 577-590.

Beckmann, C.L., Mitchell, J.G., Seuront, L., Stone, D.A.J. and Huveneers, C. (2014). From egg to hatchling: preferential retention of fatty acid biomarkers in young-of-the-year Port Jackson sharks Heterodontus portusjacksoni. Journal of Fish Biology, 85(3), 944-952.

Bice, C. M., Gehrig, S.L., Zampatti, B.P., Nicol, J.M., Wilson, P., Leigh, S.L. and Marsland, K. (2014). Flow-induced alterations to fish assemblages, habitat and fish–habitat associations in a regulated lowland river, Hydrobiologica, 722(1), 205-222.

Boys, C,A., Lyon, J., Zampatti, B., Norris, A., Butcher, A., Robinson, W. and Jackson, P. (2014). Demonstration reaches: looking back whilst moving forward with river rehabilitation under the Native Fish Strategy. Ecological Management and Restoration, 15(s1), 67-74.

Collins, G.M., Ball, A.S., Qin, J.G., Bowyer, J. and Stone D.A.J. (2014). Effect of alternative lipids and temperature on growth factor gene expression in yellowtail kingfish (Seriola lalandi). Aquaculture Research, 45(7), 1236-1245.

Earl, J., Fowler, A.J., Ye, Q. and Dittmann, S. (2014). Age validation, growth and population characteristics of greenback flounder (Rhombosolea tapirina) in a large temperate estuary, New Zealand Journal of Marine and Freshwater Research, 48(2), 229-244.

Feenstra, J., McGarvey, R., Linnane, A., Punt, A.E. and Bean, N. (2014). Environmental influences on daily commercial catch rates of South Australia's southern rock lobster (Jasus edwardsii). Fisheries Oceanography, 23(4), 362-374.

Ferguson, G.J., Ward, T.M., Ivey, A. and Barnes, T. (2014). Life history of Argyrosomus japonicus, a large sciaenid at the southern part of its global distribution: Implications for fisheries management. Fisheries Research, 151, 148-157.

Forwood, J.M., Harris, J.O., Landos, M., and Deveney, M.R. (2014). Life cycle and settlement of an Australian isolate of Ichthyophthirius multifiliis Fouquet, 1876 from rainbow trout. Folia Parasitologica, doi: 10.14411/fp.2015.013

Green, B., Gardner, C., Hochmuth, J.D. and Linnane, A. (2014). Environmental effects on fished lobsters and crabs. Reviews in Fish Biology and Fisheries, 24(2), 613-638.

Irving, A. D., Tanner, J. E., & Collings, G. J. (2014). Rehabilitating seagrass by facilitating recruitment: improving chances for success. Restoration Ecology, 22(2), 134-141.

Koehn, J.D., King, A.J., Beesley, L., Copeland, C., Zampatti, B. P. and Mallen-Cooper, M. (2014) Flows for native fish in the Murray-Darling Basin: lessons and considerations for future management. Ecological Management and Restoration, 15(s1), 40–50.

Lange, B., Currie, K.L., Howarth, G.S. and Stone, D.A.J. (2014). Dietary inclusion of grape seed extract and dried macroalgae improves the survival of greenlip abalone (Haliotis laevigata) at high water temperatures. Aquaculture, 433, 348-360.

Linnane, A., McGarvey, R., Gardner, C., Walker, T.I., Matthews, J., Green, B. and Punt, A.E. (2014). Linking puerulus settlement and recruitment in southern rock lobster fisheries, The Lobster Newsletter, 27(1), 13-15.

Liu, Y., Tong, X., Robinson, N., Qin, J. and Li, X. (2014). Cryopreservation of sperm in farmed Australian greenlip abalone Haliotis laevigata, Cryobiology, 68(2), 185-193.

Lynch, T.P., Morello, E.B., Evans, K., Richardson, A.J., Rochester, W., Steinberg, C. R., Roughan, M., Thompson, P., Middleton, J.F., Feng, M., Sherrington, R., Brando, V., Tilbrook, B., Ridgway, K., Allen, S., Doherty, P., Hill, K. and Moltmann, T. C. (2014). IMOS National Reference Stations: A Continental-Wide Physical, Chemical and Biological Coastal Observing System. PloS one, 9(12), doi:10.1371/journal.pone.0113652.

Middleton, J. F. and Doubell, M. (2014). Carrying capacity for finfish aquaculture. Part I—Near-field semi-analytic solutions. Aquacultural Engineering, 62, 54-65.

Middleton, J. F., Luick, J. and James, C. (2014). Carrying capacity for finfish aquaculture, Part II–Rapid assessment using hydrodynamic and semi-analytic solutions. Aquacultural Engineering, 62, 66-78.

Middleton, J.F., James, N.P., James, C. and Bone, Y. (2014). Cross-shelf seawater exchange controls the distribution of temperature, salinity and neritic carbonate sediments in the Great Australian Bight, Journal of Geophysical Research: Oceans, 119(4), 2539-2549.

Miller, K.J., Mundy, C.M. and Mayfield, S. (2014). Molecular genetics to inform spatial management in benthic invertebrate fisheries: a case study using the Australian Greenlip Abalone. Molecular Ecology, 23(20), 4958-4975.

Nayar, S. and Bott, K. (2014). Current status of global cultivated seaweed production and markets. World Aquaculture, 45(2), 32-37.

Seuront, L., Doubell, M.J. and van Ruth P. (2014). Virally-mediated versus grazer-induced mortality rates in a warm-temperate inverse estuary (Spencer Gulf, South Australia). Open Journal of Marine Science, 4(4), 257-278.

Shaughnessy, P.D. and Goldsworthy, S.D. (2014). Long-nosed fur seal - a new vernacular name for the fur seal Arctocephalus forsteri in Australia. Marine Mammal Science, DOI: 10.1111/mms.12203. Article first published online: 30 Dec 2014.

Steer, M.A. and Fowler, A.J. (2014). Spatial variation in shape of otoliths for southern garfish Hyporhamphus melanochir – contribution to stock structure. Marine Biology Research, DOI:10.1080/17451000.2014.952313. Article first published online: 06 Dec 2014.

Stone, D.A.J., Roberts, S.D., Currie, K-L (2014). Hyper-saline conditions affect growth, osmoregulation and survival of fingerling and juvenile yellowtail kingfish, Seriola lalandi. Journal of Aquaculture and Marine Biology, 1(1), 1-11.

Stone, D.A.J., Bansemer, M.S., Lange, B., Schaefer, E.N., Howarth, G.S. and Harris, J.O., (2014). Dietary intervention improves the survival of cultured greenlip abalone (Haliotis laevigata Donovan) at high water temperatures. Aquaculture, 430, 230-240.

Tanner, J.E. (2014). Restoration of the seagrass Amphibolis antarctica - temporal variability and long-term success. Estuaries & Coasts, DOI 10.1007/s12237-014-9823-4.

Tanner, J. E., Irving, A. D., Fernandes, M., Fotheringham, D., McArdle, A., & Murray‐Jones, S. (2014). Seagrass rehabilitation off metropolitan Adelaide: a case study of loss, action, failure and success. Ecological Management & Restoration, 15(3), 168-179.

Vilizzi, L., Thwaites, L.A. and Smith, B.B. (2014). Exploitation by common carp (Cyprinus carpio) of a floodplain wetland of the lower River Murray under drought and flooding conditions, Transactions of the Royal Society of South Australia, 138(1), 113-123.

Vilizzi, L., Thwaites, L.A., Smith, B.B., Nicol, J. M., and Madden, C.P. (2014). Ecological effects of common carp (Cyprinus carpio) in a semi-arid floodplain wetland. Marine and Freshwater Research, 65(9), 802-817.

Zhu, W.J., Li, X., Qu, D., Liu, Y.B. and Clarke S. (2014). Cryopreservation of sperm from wild greenlip abalone (Haliotis laevigata) in Australia. Aquaculture, 432, 60-66.

Books/Book Chapters

Heaven, C., Rodda K., Fraser, L., Lauer P., Davison, J. and Clarke, S. (2014). Aquaculture in Spencer Gulf. In: ‘Natural history of Spencer Gulf’.: Shepherd, S.A., Madigan, S.M., Gillanders, B.M., Murray-Jones, S. and Wiltshire, D.J. (eds) Royal Society of South Australia, Adelaide, South Australia, pp. 347-358.

Tanner, J.E. and McDonald, B. (2014) Faunal and floral associations with seagrasses in Spencer Gulf. In: ‘Natural History of Spencer Gulf’.: Shepherd, S.A., Madigan, S.M., Gillanders, B.M., Murray-Jones, S. and Wiltshire, D.J. (eds) Royal Society of South Australia, Adelaide, pp. 208–216.

van Ruth, P.D. (2014) Plankton in Spencer Gulf. In: ‘Natural History of Spencer Gulf’.: Shepherd, S.A., Madigan, S.M., Gillanders, B.M., Murray-Jones, S. and Wiltshire, D.J. (eds) Royal Society of South Australia, Adelaide, pp. 171–180.

Conference Papers and Posters

Bansemer, M.S., Forder, R.E.A., Howarth, G.S., Suitor, G.M., Bowyer, J. and Stone, D.A.J. (2014). The effect of dietary soybean meal and soy protein concentrate on the intestinal mucus layer and development of sub-acute enteritis in yellowtail kingfish (Seriola lalandi) at suboptimal water temperature. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Bansemer, M.S., Qin, J., Harris, J.O., Howarth, G.S. and Stone, D.A.J. (2014). Nutrient utilisation and growth of greenlip abalone (Haliotis laevigata) fed nitrogen enriched macroalgae. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Bowyer, J. N., Jian, G., Qin, R.P., Smullen, Adams, L.R. and Stone, D.A.J. (2014). The response of Yellowtail Kingfish (Seriola lalandi) digestive enzyme activity to the replacement of dietary fish oil. Poster. 16th International Symposium of Fish Nutrition and Feeding, Cairns, Queensland, Australia, May 25 - 30, 2014.

Buss, J.J., Jones, D.A., Lumsden, A., Harris, J.O. and Stone, D.A.J. (2014). Restricting feed rate has more effect than diet type on the feeding behaviour of greenlip abalone Haliotis laevigata (Poster). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Currie, K.L., Harris, J.O. and Stone, D.A.J. (2014). Lower water temperature and increasing age on extend the gastrointestinal evacuation time of greenlip abalone Haliotis laevigata. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Duong, D.N., Stone, D.A.J., Qin, J.G. and Harris, J.O. (2014). Bioenergetics of greenlip abalone (Haliotis laevigata) and hybrid abalone (H. laevigata x H. rubra) fed different protein levels at different water temperatures. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Hai, T.H., Stone, D.A.J, Harris, J. and Qin, J. (2014). Effects of dietary macroalgae and commercial diets on shell and flesh colour of greenlip abalone (Haliotis laevigata). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Harris, J.O. and Stone, D.A.J. (2014). The emergence and status of the Australian abalone aquaculture industry. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

James, C., Doubell, M.J., Luick, J. and Middleton J. (2014). SWAN model study: Effects of wind forcing temporal resolution on waves in Spencer Gulf, The Australian Coastal and Oceans Modelling and Observations Workshop, Canberra (ACOMO 2014), 7-8 October 2014.

Lange, B.D., Stone, D.A.J. and Howarth, G.S. (2014). Grape seed extract and dried macroalgae Ulva lactuca improve survival of greenlip abalone Haliotis laevigata at high water temperature. Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Li, X., Liu, J.F., Zhen, M.J., Clarke, S. and, Qiu, X.M. (2014). Effects of spawning on the immune response of Australian blacklip abalone (Haliotis rubra). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Liu, Y.B., Li, X., Robinson, N. and Qin, J.G. (2014). Sperm cryopreservation in wild and farmed greenlip abalone (Haliotis laevigata). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Livore, J.P. and Ye, Q. (2014). Spatio-temporal variability of native flow-cued spawning fish larvae in association to environmental water in the lower River Murray. Joint Congress of the Australian Society for Fish Biology and Australian Society for Limnology. Darwin, Northern Territory, 30 June – 3 July 2014.

Loo, M.G.K, Ophel Keller, K., Cheshire, A., Herdina, D.S., McKay, A., Hartley, D. and Clarke, S. (2014). Environmental monitoring of finfish aquaculture using a DNA-based technique. World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Middleton, J., Luick, J., James, C., Doubell, M.J. and de Oliveira, H. (2014). Coastal Modelling at the South Australian Research and Development Institute, The Australian Coastal and Oceans Modelling and Observations Workshop, Canberra (ACOMO 2014), 7-8 October 2014.

Mitchell, J., van Dongen Vogels, V., Jeffries, T.C., Paterson, J., Newton, K., Smith, R.J., Lavery, T., Roudnew, B.l., Beckmann, C., Rogers, P.J., Prime, E., Winn, K., Dann, L., Doubell, M.J., Leterme, S.C. and Seymour, J.R. (2014). Coastal biology from the microbial persective. The International Coastal Biology Conference, Yantai City, Shandong Province, P.R. China, 26-30 September 2014.

Nayar S. (2014). Significance of seagrass epiphytes as a nitrogen sink: A study of two coastal embayments in Southern Australia. Oral presentation – 5th Congress of the International Society for Applied Phycology, Sydney, 22-27 June 2014.

Nayar, S. and Bott, K. (2014). Nutritional composition of Ulva lactuca cultivated in different nitrogen sources. Oral presentation – 5th Congress of the International Society for Applied Phycology, Sydney, 22-27 June 2014.

Nicol, J.M., Gehrig, S.L. and Frahn, K.A. (2014). Biodiversity benefits of erosion control plantings in lakes Alexandrina and Albert, lower River Murray, South Australia. Joint Congress of the Australian Society for Fish Biology and Australian Society for Limnology. Darwin, Northern Territory, 30 June – 3 July 2014.

Stone, D.A.J., Bansemer, M.S., Lange, B.D., Schaefer, E.N., Howarth, G.S. and Harris, J.O. (2014). A temperature challenge model to investigate summer mortality in greenlip abalone (Haliotis laevigata). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Stone, D.A.J., Bansemer, M.S., Harris, J.O., Mercer, G.J. and Wang, H. (2014). Dietary protein level and water temperature interactions for juvenile greenlip (Haliotis laevigata) and hybrid abalone (H. laevigata & H. rubra). Oral presentation – World Aquaculture Conference, Adelaide, South Australia, 7 - 11 June 2014.

Ward, T.M., Smith, D.C., Lukatelich, R., Lewis, R., Begg, G.A. and Smith, R. (2014). Integrated approach to ecological and socio-economic research to support the oil and gas industry: the great australian bight collaborative research science program. In International Oil Spill Conference Proceedings (Vol. 2014, No. 1, pp. 2193-2205). American Petroleum Institute.

Client Reports

Beckmann, C.L., Hooper, G.E. and Noell, C.J. (2014). West Coast Prawn Penaeus (Melicertus) latisulcatus Fishery 2012–13. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000772-6. SARDI Research Report Series No. 808. 76pp.

Begg, G.A., Brooks, K.J., Stephenson, R.L. and Sloan, S.R. (2014) Practical implementation of social and economic elements in ecosystem based fisheries management and integrated fisheries management frameworks. South Australian Research and Development Institute (Aquatic Sciences), Adelaide, June 2014, SARDI Publication No. F2014/000315-1, SARDI Research Report Series No. 765. 85pp.

Bice, C., Whiterod, N. and Zampatti, B. (2014). The Critical Fish Habitat Project: Assessment of the success of reintroduction of threatened fish species in the Coorong, Lower Lakes and Murray Mouth region 2011‒2014. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000348-3. SARDI Research Report Series No. 792. 41pp.

Bice, C. M. and Zampatti, B. P. (2014). Fish assemblage structure, movement and recruitment in the Coorong and Lower Lakes in 2013/14. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000186-4. SARDI Research Report Series No. 800. 61pp.

Bice CM, Zampatti BP, Aldridge KA, Furst D, Kilsby N, Maxwell S, Nicol J, Oliver R, Rogers D, Turner R and Wallace T (2014). An assessment of the knowledge requirements to support effective provisions of environmental water in the South Australian Murray-Darling Basin: Part 2 – Development of hydro-ecological conceptual models and identification of knowledge gaps in current understanding of flow‒biota relationship. Prepared by the South Australian Research and Development Institute (Aquatic Sciences) for the Goyder Institute for Water Research. Goyder Institute for Water Research Technical Report Series No 14/18.

Dent, J., Mayfield, S., Ferguson, G., Carroll, C. and Burch, P. (2014). Harvestable biomass of Katelysia spp. in the South Australian commercial mud cockle fishery. Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000191-1. SARDI Research Report Series No. 766. 22pp.

Earl, J. and Ward, T.M. (2014). Fishery statistics for the South Australian Lakes and Coorong Fishery (1984/85 - 2012/13). Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Sciences), Adelaide. SARDI Publication No. F2009/000669-5. SARDI Research Report Series No. 813. 18pp.

Earl, J. and Ward, T.M. (2014). Mulloway (Argyrosomus japonicus) Stock Assessment Report 2013/14. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000898-3. SARDI Research Report Series No. 814. 55pp.

Ferguson, G.J. and Ward, T.M. (2014). Support for harvest strategy development in South Australia’s Lakes and Coorong Fishery for pipi (Donax deltoides). Final report for the Fisheries Research and Development Corporation. Prepared by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. FRDC Project No. 2008/008. 153pp

Forwood, J.M., Harris, J.O., Landos, M.A. and Deveney M.R. (2014). Optimisation of treatment of Ichthyophthirius multifiliis in farmed freshwater fish. Final Report to the Fisheries Research & Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000210-1. SARDI Research Report Series No. 762. 80pp.

Fowler, A.J. and McGarvey, R. (2014). Assessing the effects of South Australia’s snapper spawning spatial closures. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000689-1. SARDI Research Report Series No. 803. 25pp.

Fowler, A.J., McGarvey, R., Carroll, J. and Feenstra, J.E. (2014). King George Whiting (Sillaginodes punctatus) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. F2007/000843-4. SARDI Research Report Series No. 801. 85pp.

Fowler, A.J., McGarvey, R., Steer, M.A. and Feenstra, J.E. (2014). The South Australian Marine Scalefish Fishery Status Report – Analysis of Fishery Statistics for 2013/14. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000565-9. SARDI Research Report Series No. 816. 44pp.

Frahn, K., Gehrig, S., Nicol, J. and Marsland, K. (2014). Lower Lakes Vegetation Condition Monitoring – 2013/2014. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000370-6. SARDI Research Report Series No. 795. 83pp.

Fredberg, J.F., Thwaites, L.A. and Earl, J. (2014). Oriental weatherloach, Misgurnus anguillicaudatus, in the River Murray, South Australia: A Risk Assessment. Report to Biosecurity SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000381-1. SARDI Research Report Series No. 786. 115pp.

Gehrig, S.L. (2014). Investigating use of drip irrigation to improve condition of black box (Eucalyptus largiflorens) woodlands. Phase II: Optimal watering regimes. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000438-2. SARDI Research Report Series No. 793. 56pp.

Gehrig, S.L., Marsland, K.B., Nicol, J.M. and Weedon, J.T. (2014). Chowilla Icon Site – Floodplain Vegetation Monitoring 2014 Interim Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000279-5. SARDI Research Report Series No. 804. 68pp.

Gluis M.R. and Li X. South Australian Research and Development Institute (Aquatic Sciences) 2014, Developing clam aquaculture in Australia: a feasibility study on culturing Donax deltoides and Katelysia rhytiphora on intertidal and subtidal leases in South Australia. Adelaide, August.

Gluis M.R. and Li X. South Australian Research and Development Institute (Aquatic Sciences) 2014, Hatchery Manual for Larval Rearing of Vongole Katelysia rhytiphora. Adelaide, August.

Goldsworthy, S.D., Ahonen, H., Bailleul, F. and Lowther, A.D. (2014). Determining spatial distribution of foraging effort by Australian sea lions in southern Western Australia: assisting in spatial and temporal management of commercial fisheries. Report to the Australian Marine Mammal Centre. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000378-1. SARDI Research Report Series No. 784. 21pp.

Goldsworthy, S.D., Kennedy, C., and Lashmar, K. (2014). Monitoring the status, trends in abundance and key demographic rates of the Australian sea lion population at Seal Bay – Kangaroo Island. Report to the Nature Foundation SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000787-1. SARDI Research Report Series No. 815. 29pp.

Goldsworthy, S.D., Kennedy, C, Shaughnessy, P.D., and Mackay, A.I. (2014). Monitoring of Seal Bay and other pinniped populations on Kangaroo Island: 2012-2015. Report to the Department of Environment, Water and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000332-1. SARDI Research Report Series No. 782. 39pp.

Goldsworthy, S.D., Mackay, A.I., Shaughnessy, P.D., Bailleul, F and McMahon, C.R. (2014). Maintaining the monitoring of pup production at key Australian sea lion colonies in South Australia (2013/14). Final Report to the Australian Marine Mammal Centre. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000665-4. SARDI Research Report Series No. 818. 66pp.

Hutchinson, W.G. and Skordas, P. (2014). Performance of western king prawn (Melicertus latisulcatus) in saline groundwater from Bore 24 of the Woolpunda Salt Interception Scheme. Client only report prepared for A-Culture Pty Ltd - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000199-1. SARDI Research Report Series No.760. 29pp.

Huveneers, C., Rogers, P.J. and Drew, M. (2014). Monitoring shark species of conservation concern within the Adelaide metropolitan and Gulf St Vincent regions. Final Report to the Adelaide and Mount Lofty Ranges Natural Resources Management. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000716-1. SARDI Research Report Series No. 754. 89pp.

Linnane, A. and McGarvey, R. (2014). Tactical Research Fund: Assessing the feasibility of spatial management in the South Australian Northern Zone Rock Lobster (Jasus edwardsii) fishery. Final Report to the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000460-1. SARDI Research Report Series No. 790. 44pp.

Linnane, A., McGarvey, R. and Feenstra, J. (2014). Northern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2013/14. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No.F2007/000714-8. SARDI Research Report Series No. 811. 17pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P. (2014). Southern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2013/14. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000715-8. SARDI Research Report Series No. 812. 18pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P. (2014). Southern Zone Rock Lobster (Jasus edwardsii) Fishery 2012/13. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000276-8. SARDI Research Report Series No. 798. 87pp.

Linnane, A., McGarvey, R., Feenstra, J and Hoare, M. (2014). Northern Zone Rock Lobster (Jasus edwardsii) Fishery 2012/13. Fishery assessment report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000320-8. SARDI Research Report Series No. 797. 75pp.

Linnane, A., McGarvey, R., Feenstra, F., Reilly, D. and McLeay, L. (2014). Victorian Rock Lobster and Giant Crab Fisheries Fishery Status Report - 2012/2013 Fishing Year. Fishery Status Report to Fisheries Victoria. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000434-3. SARDI Research Report Series No. 806. 39pp.

Loo, M.G.K., Mantilla, L. and Moody, I. (2014). Adelaide Desalination Project – Infauna Survey June 2012 and February 2013 – Final Report - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000214-1. SARDI Research Report Series No. 764. 95pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2012/13 Report for Clean Seas Aquaculture Growout Pty Ltd, Boston Bay, South Australia: Licence Numbers AQ00015, AQ00139, AQ00235, FF00085 and FF00090 - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-5. SARDI Research Report Series No. 787. 21pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Karatina Fishing Pty Ltd, Licence Number AQ00024. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 767. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: KIS Tuna Pty Ltd, Licence Number AQ00030. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 768. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Australian Tuna Fisheries Pty Ltd, Licence Number AQ00047. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 769. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Tony's Tuna International Pty Ltd, Licence Number AQ00053. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 770. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Marnikol Fisheries Pty Ltd, Licence Number AQ00057. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 771. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Blaslov Fishing Pty Ltd, Lucky S Fishing Pty Ltd and Sekol Farmed Tuna Pty Ltd, Licence Numbers AQ00058, AQ00059 and AQ00060. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 772. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: SAMS Sea Farm Pty Ltd, Licence Number AQ00112. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 773. 22pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Tony's Tuna International Pty Ltd, Licence Number AQ00169. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 774. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Dinko Tuna Farmers Pty Ltd, Licence Number AQ00170. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 775. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Eyre Tuna Pty Ltd, Licence Number FB00051. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 776. 20pp.

Loo, M.G.K. and Giblot-Ducray, D. (2014). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2013 Report: Australian Fishing Enterprises Pty Ltd, Licence Number FB00079. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000585-6. SARDI Research Report Series No. 777. 22pp.

Mackay, A.I. and Goldsworthy, S.D. (2014). Development and implementation of a new survey protocol for monitoring southern right whales in the Great Australian Bight. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000052-1. SARDI Research Report Series No. 756. 26pp.

Mathwin, R., McNeil, D.G. and Schmarr, D.W. (2014). A Biological Condition Gradient Model Approach for Fish-Based Ecological Condition Monitoring in the Western Mount Lofty Ranges, South Australia. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000020-1. SARDI Research Report Series No. 758. 36pp.

Mayfield, S., Ferguson, G., Carroll, J. and Dent, J. (2014). Central Zone Abalone (Haliotis laevigata and H. rubra) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000611-5. SARDI Research Report Series No. 810. 77pp.

Mayfield, S., Ferguson, G., Carroll, J. and Hogg, A. (2014). Status of the Southern Zone Blacklip Abalone (Haliotis rubra) Fishery in 2012/13. Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000359-1. SARDI Research Report Series No. 789. 13pp.

Mayfield, S., Ferguson, G.J., Chick, R.C., Dixon, C.D. and Noell, C. (2014). A reporting framework for ecosystem-based assessment of Australian prawn trawl fisheries: a Spencer Gulf prawn trawl fishery case study. Final report to the Fisheries Research and Development Corporation. Prepared by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. FRDC Project No. 2011/062. 74pp.

Mayfield, S., Miller, K.J. and Mundy, C.N. (2014). Towards understanding greenlip abalone population structure. Final report for the Fisheries Research and Development Corporation. Prepared by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. FRDC Project No. 2010/013. 31pp.

McGarvey, R., Punt, A.E., Gardner, C., Feenstra, J., Hartmann, K., Hoshino, E., Burch, P., Paterson, S., Matthews, J., Linnane, A., Rippin, L. and Morison, J. (2014). Bioeconomic decision support tools for Southern Rock Lobster. Report to the Australian Seafood Cooperative Research Centre. Project No. 2009/714.20. 200pp.

Nicol, J.M., Gehrig, S.L. and Frahn, K.A. (2014). Establishment success and benefits to the aquatic plant community of planting Schoenoplectus validus around the shorelines of lakes Alexandrina and Albert-2014. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000414-2. SARDI Research Report Series No. 794. 37pp.

Nicol, J.M., Gehrig, S.L. and Strawbridge, A.D. (2014). Mapping Large Emergent Plant Communities in Lakes Alexandrina and Albert – Data Summary and Recommendations. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000629-1. SARDI Research Report Series No. 809. 23pp.

Noell, C.J., Beckmann, C.L., and Hooper, G.E. (2014). Blue Crab (Portunus armatus) Fishery 2012/13. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000729-10. SARDI Research Report Series No. 757. 77pp.

Noell, C.J., Hooper, G.E. and Beckmann, C.L. (2014). Spencer Gulf Prawn Penaeus (Melicertus) latisulcatus Fishery 2012/13. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000770-7. SARDI Research Report Series No. 788. 84pp.

Pecl GT, Ward T, Briceno F, Fowler A, Frusher S, Gardner C, Hamer P, Hartmann K, Hartog J, Hobday A, Hoshino E, Jennings S, Le Bouhellec B, Linnane A, Marzloff M, Mayfield S, Mundy C, Ogier E, Sullivan A, Tracey S, Tuck G, Wayte S. (2014) Preparing fisheries for climate change: identifying adaption options for four key fisheries in South Eastern Australia. Fisheries Research and Development Corporation, Project 2011/039.

Rogers, P.J., Barnes, T.C., Wolf, Y., Gregory, P., Williams, N., Madonna, A. and Loisier, A. (2014). On-site recreational fishery survey and research of mulloway (Argyrosomus japonicus) in the Yalata Indigenous Protected Area and Far West Coast Marine Park between 2009 and 2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000074-1. SARDI Research Report Series No.759. 46 pp.

Rogers, P. J., Huveneers, C, and Beckmann, C.L. (2014). Monitoring residency of white sharks, Carcharodon carcharias in relation to the cage-diving industry in the Neptune Islands Group Marine Park. Report to the Department of Environment, Water and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000801-1. SARDI Research Report Series No. 818. 69pp.

Schmarr, D. W. and Mathwin, R. (2014). Baseline Fish Monitoring Program for the Northern and Yorke NRMB Region 2014. Report to the Northern and Yorke Natural Resource Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000471-1. SARDI Research Report Series No. 805. 68pp.

Schmarr, D.W., Mathwin, R. and Cheshire, D.L. (2014). Western Mount Lofty Ranges Condition Report 2012-13: Site Characterisation Supplement. Report to the Department of Environment, Water and Natural Resources - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000113-1. SARDI Research Report Series No. 783. 251pp.

Schmarr, D.W., Mathwin, R. and Cheshire D.L.M. (2014). Western Mount Lofty Ranges Fish Condition Report 2012-13. Incorporating the Barossa Valley Prescribed Water Resource Area Fish Community Study, the Verification of Water Allocation Science Project (VWASP) and the Western Mount Lofty Ranges Fish Community Monitoring. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000113-1. SARDI Research Report Series No. 780. 84pp.

Shaughnessy, P.D., Goldsworthy, S.D., and Mackay, A.I. (2014). Status and trends in abundance of New Zealand fur seal populations in South Australia. Final report to the Australian Marine Mammal Centre. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000338-1. SARDI Research Report Series No. 781. 33pp.

Stobart, B. (2014). South Australian Giant Crab (Pseudocarcinus gigas) Fishery Status Report 2012/13. Fishery Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000332-4. SARDI Research Report Series No. 763. 15pp.

Stobart, B., Mayfield, S., Dent, J. and Matthews, D.J. (2014). Status of the Western Zone Blacklip Abalone (Haliotis rubra) Fishery in 2013. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000361-1. SARDI Research Report Series No. 791. 21pp.

Stobart, B., Mayfield, S., Dent, J. and Matthews, D.J. (2014). Western Zone Greenlip Abalone (Haliotis laevigata) Fishery. Fishery Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000373-1. SARDI Research Report Series No. 796. 67pp.

Stone, D.A.J. Bansemer, M.S. and Harris, J.O. (2014). Abalone on-farm grow-out trial manual. Prepared by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. Part of CRC Project No. 2010/736. 27pp.

Stone, D.A.J., Bansemer, M.S. and Harris, J.O. (2014). Final Report. Development of formulated diets for cultured abalone. Prepared by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. CRC Project No. 2010/736. 131pp.

Tanner, J.E., Theil, M. and Fotheringham, D. (2014). Seagrass Condition Monitoring: Encounter Bay and Port Adelaide. Final report prepared for the Adelaide and Mount Lofty Ranges Natural Resources Management Board. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000139-2. SARDI Research Report Series No. 799. 23pp.

Thwaites, L.A. and Fredberg, J.F. (2014). Riverine Recovery Wetland Fish and Water Quality Baseline Surveys: 2013 Data Summary Report. Prepared for the Department of Environment, Water and Natural Resources (DEWNR) by the South Australian Research and Development Institute (Aquatic Sciences), Adelaide. 173pp.

Thwaites, L. A. and Fredberg, J. F. (2014). The response patterns of wetland fish communities following prolonged drought and widespread flooding. Prepared by the South Australian Research and Development Institute (Aquatic Sciences) for the Goyder Institute for Water Research.

Thwaites, L., Fredberg, J. and Ryan, S. (2014). Glenelg River “Judas” Carp Tracking Program. An interim report to the Glenelg Hopkins Catchment Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000122-2. SARDI Research Report Series No. 802. 27pp.

Tsolos, A. and Boyle, M. (2014). Interactions with Threatened, Endangered or Protected Species in South Australian Managed Fisheries – 2012/13. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000544-4. SARDI Research Report Series No. 755. 70pp.

Ward, T.M., Ivey, A.R. and Carroll, J.D. (2014). Spawning biomass of sardine, Sardinops sagax, in waters off South Australia in 2014. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000566-6. SARDI Research Report Series No. 807. 33pp.

Ward, T.M., Ivey, A.R. and Earl, J. (2014). Commonwealth Small Pelagic Fishery: Fishery Assessment Report 2011-2013. Report to the Australian Fisheries Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000270-5. SARDI Research Report Series No. 779. 104pp.

Ward, T.M., Ivey, A.R. and Earl, J. (2014). Commonwealth Small Pelagic Fishery: Fishery Assessment Report 2013. Report to the Australian Fisheries Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000270-5. SARDI Research Report Series No. 778. 105pp.

Wilson, P.J., Zampatti, B.P., Leigh, S.J. and Bice, C.M. (2014). Chowilla Icon Site Fish Assemblage Condition Monitoring 2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2008/000907-5. SARDI Research Report Series No. 785. 50pp.

Ye, Q., Giatas, G.C., Aldridge, K.T., Benger, S.N., Bice, C.M., Brookes, J.D., Bucater, L.B., Cheshire, K.J.M., Cummings, C.R., Doody, T.M., Fairweather, P.G., Frahn, K.A., Fredberg, J.F., Gehrig, S.L., Holland, K.L., Leigh, S.L., Lester, R.E., Lorenz, Z., Marsland, K.B., Nicol, J.M., Oliver, R.L., Overton, I.C., Pritchard, J.L., Strawbridge, A.D., Thwaites, L.A., Turnadge, C.J., Wilson, P.K. and Zampatti, B.P. (2014) Ecological responses to flooding in the lower River Murray following an extended drought. Synthesis Report of the Murray Flood Ecology Project.

Ye, Q., Livore, J., Aldridge, K., Bradford, T. , Busch, B., Earl, J., Hipsey, M., Hoffmann, E., Joehnk, K., Lorenz, Z., Nicol, J., Oliver, R., Shiel, R., Suitor, L., Tan, L., Turner, R., and Wegener, I. (2014). Monitoring the ecological responses to Commonwealth environmental water delivered to the Lower Murray River in 2012-13. Report 2, prepared for Commonwealth Environmental Water Office. South Australian Research and Development Institute, Aquatic Sciences.

Zampatti, B.P., Bice, C.M., Wilson, P.J. and Ye, Q. (2014). Population dynamics of Murray cod (Maccullochella peelii) in the South Australian reaches of the River Murray: a synthesis of data from 2002–2013. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2014/000089-1. SARDI Research Report Series No. 761. 42pp.

2013

Scientific papers

Beckmann, C., Mitchell, J. G., Seuront, L., Stone, D. and Huveneers, C. (2013). Fatty acid profiles as a function of dietary composition: a captive feeding trial with Port Jackson sharks. Physiological and Biochemical Zoology, 86, 266–278.

Beckmann, C., Mitchell, J. G., Seuront, L., Stone, D. and Huveneers, C. (2013). A controlled feeding experiment investigating the effects of a dietary switch on muscle and liver fatty acid profiles in Port Jackson sharks Heterodontus portusjacksoni. Journal of Experimental Marine Biology and Ecology, 448, 10-18.

Bice, C. M., Gehrig, S. L., Zampatti, B. P., Nicol, J. M., Wilson, P., Leigh, S. L. and Marsland, K. (2013). Flow-induced alterations to fish assemblages, habitat and fish-habitat associations in a regulated lowland river. Hydrobiologia, 722, 205-222.

Bott, N. J., Miller, T. M. and Cribb, T. H. (2013). Bucephalidae (Platyhelminthes: Digenea) of Plectropomus (Serranidae: Epinephelinae) in the tropical Pacific. Parasitology Research, 112(7), 2561-2584.

Bowyer, J. N., Booth, M. A., Qin, J. G. and Stone D. A. J. (2013). Temperature and dissolved oxygen influences growth and digestive enzyme activities of yellowtail kingfish Seriola lalandi (Valenciennes, 1833). Aquaculture Research, 2013, doi: 10.1111/are.12146.

Bowyer, J. N., Qin, J. G., Smullen, R. P., Adams, L. R. and Stone, D. A. J. (2013). The use of a soy product in yellowtail kingfish (Seriola lalandi) feeds at different water temperatures: 1. Solvent extracted soybean meal. Aquaculture, 384, 35–45.

Bowyer, J. N., Qin, J. G., Smullen, R. P., Adams, L. R. and, Stone, D. A. J. (2013). The use of a soy product in yellowtail kingfish (Seriola lalandi) feeds at different water temperatures: 2. Soy protein concentrate. Aquaculture, 410, 1–10.

Bucater, L. B., Livore, J. P., Noell, C. J. and Ye, Q. (2013). Temporal variation of larval fish assemblages of the Murray Mouth in prolonged drought conditions. Marine and Freshwater Research 64, 932–937.

Doubleday, Z. A., Clarke, S. M., Li, X., Pecl, G. T., Ward, T., Battaglene, S. C. and Stoklosa, R. (2013). Assessing the risk of climate change to aquaculture: a case study from south-east Australia. Aquaculture Environment Interactions, 3, 163-175.

Ferguson, G. J., Ward, T. M., Ye, Q., Geddes, M. C. and Gillanders, B. M. (2013). Impacts of drought, flow regime and fishing on the fish assemblage in southern Australia’s largest temperate estuary. Estuaries and Coasts, 36(4), 737–753.

Forwood, J., Harris, J. O. and Deveney, M. (2013). Efficacy of current and alternative bath treatments for Lepidotrema bidyana infecting silver perch, Bidyanus bidyanus. Aquaculture, 416-417, 65-71.

Goldsworthy, S. D., Page, B., Rogers, P. J., Bulman, C., Wiebkin, A., McLeay, L., Einoder, L., Baylis, A., Braley, M., Caines, R., Daly, K., Huveneers, C., Peters, K., Lowther, A. D. and Ward, T. (2013). Trophodynamics of the eastern Great Australian Bight ecosystem: ecological change associated with the growth of Australia's largest fishery. Ecological Modelling, 255, 38– 57.

Hammer, M. P., Bice, C. M., Hall, A., Frears, A., Watt, A., Whiterod, N. S., Beheregaray, L. B., Harris, J. O. and Zampatti, B. P. (2013). Freshwater fish conservation in the face of critical water shortages in the southern Murray-Darling Basin, Australia. Marine and Freshwater Research, 64, 807–821.

Huveneers, C., Rogers, P. J., Semmens, J., Beckmann, C., Kock, A. A., Page, B. and Goldsworthy, S. (2013). Effects of an electric field on white sharks: in situ testing of an electric deterrent. PloS one, 8(5), e62730.

Irving, A. D, Tanner, J. E. and Gaylard, S. G. (2013). An integrative method for the evaluation, monitoring and comparison of seagrass habitat structure. Marine Pollution Bulletin, 66(1), 176-184.

Leigh, S. J. and Zampatti, B. P. (2013). Movement and mortality of Murray cod, Maccullochella peelii, during overbank flows in the lower River Murray, Australia. Australian Journal of Zoology, 61(2), 160-169.

Linnane, A., McGarvey, R., Hoare, M. and Hawthorne, P. (2013). The importance of conserving recruitment pulses in rock lobster (Jasus edwardsii) fisheries where puerulus settlement is low or highly sporadic. Marine Biology Research, 9(1), 97-103.

Lowther, A. D., Harcourt, R. G., Page, B. and Goldsworthy, S. D. (2013). Steady as He Goes: At-Sea Movement of Adult Male Australian Sea Lions in a Changing Marine Environment. PLoS one. 8(9), e74348.

McNally, J., Callan, D., Andronicos, N., Bott, N. J. and Hunt, P. W. (2013). DNA-based methodology for the quantification of gastrointestinal nematode eggs in sheep faeces. Veterinary Parasitology, 198(3), 325-335.

Mitchell, J. G., Seuront, L., Doubell, M. J., Losic, D., and Voelcker, N. H. (2013). The Role of Diatom Nanostructures in Biasing Diffusion to Improve Uptake in a Patchy Nutrient Environment. PloS one, 8(5), e59548.

Nayar, S. and Froese, F. (2013). Are biofuels from seaweeds a viable proposition? Bioeconomic modelling of biogas production and co-generation in an Australian context. Biofuels, 4(4), 371-378.

Patterson, J. S., Nayar, S., Mitchell, J.G. and Seuront, L. (2013). Population-specific shifts in viral and microbial abundance within a cryptic upwelling. Journal of Marine Systems, 113, 52-61.

Pochon, X., Bott, N. J., Smith, K. F. and Wood, S. A. (2013). Evaluating Detection Limits of Next-Generation Sequencing for the Surveillance and Monitoring of International Marine Pests. PloS one, 8(9), e73935.

Punt, A., Trinnie, F., Walker, T., McGarvey, R., Feenstra, J., Linnane, A. and Hartmann, K. (2013). The performance of a management procedure for rock lobsters, Jasus edwardsii, off western Victoria, Australia in the face of non-stationary dynamics. Fisheries Research, 137, 116-128.

Rodgers, G. G., Linnane, A. J. and Huveneers, C. (2013). Contrasting diet in two temperate reef fish species (Notolabrus tetricus and Meuschenia hippocrepis) as determined from commercial rock lobster bycatch samples. Transactions of the Royal Society of South Australia, 137(1), 80–89.

Rogers, P. J., Huveneers, C., Goldsworthy, S. D., Mitchell, J. G. and Seuront, L. (2013). Broad‐scale movements and pelagic habitat of the dusky shark Carcharhinus obscurus off Southern Australia determined using pop‐up satellite archival tags. Fisheries Oceanography, 22(2), 102-112.

Rogers, P. J., Huveneers, C., Goldsworthy, S. D., Cheung, W. W. L., Jones, G. K., Mitchell, J. G. and Seuront, L. (2013). Population metrics and movement of two sympatric carcharhinids: a comparison of the vulnerability of pelagic sharks of the southern Australian gulfs and shelves. Marine and Freshwater Research, 64(1), 20-30.

Schaefer, E. N., Harris, J. O., Howarth, G. S., Bansemer, M. S. and Stone, D. A. J. (2013). Comparative histological changes in the greenlip abalone Haliotis laevigata gastrointestinal tract in response to water temperature, different dietary protein levels, and animal age. Journal of Shellfish Research, 32(1), 131-141.

Semmens, J. M., Payne, N. L., Huveneers, C., Sims, D. W., and Bruce, B. D. (2013). Feeding requirements of white sharks may be higher than originally thought. Scientific Reports, 3: 1471, doi: 10.1038/srep01471.

Stobart, B., Mayfield, S. and McGarvey, R. (2013). Maximum Yield or Minimum Risk: Using Biological Data to Optimize Harvest Strategies in a Southern Australian Molluscan Fishery. Journal of Shellfish Research, 32(3), 899-909.

Stone, David A. J., Harris, James O., Wang Hanru, Mercer, Georgia J., Schaefer, Elise N., Bansemer, Matthew S. (2013). Dietary Protein Level and Water Temperature Interactions for Greenlip Abalone, Haliotis laevigata. Journal of Shellfish Research, 32(1), 119-130.

Tu, W. C., Mühlhäusler, B. S., James, M. J., Stone, D. A., and Gibson, R. A. (2013). Dietary alpha-linolenic acid does not enhance accumulation of omega-3 long-chain polyunsaturated fatty acids in barramundi (Lates calcarifer). Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology, 164(1), 29-37.

Vilizzi, L., Thwaites, L.A. and Smith, B.B. (2013) Exploitation by common carp (Cyprinus carpio) of a floodplain wetland of the lower River Murray under drought and flooding conditions. Transactions of the Royal Society of South Australia, 138(1), 113-123.

Wan Ahmad, W. A. R., Stone, D. A. and Schuller, K. A. (2013). Dietary fish oil replacement with palm or poultry oil increases fillet oxidative stability and decreases liver glutathione peroxidase activity in barramundi (Lates calcarifer). Fish Physiology and Biochemistry, 39(6), 1631-1640.

Zampatti, B. P. and Leigh, S. J. (2013). Effects of flooding on recruitment and abundance of Golden Perch (Macquaria ambigua ambigua) in the lower River Murray. Ecological Management and Restoration, 14(2), 135–143.

Zampatti, B. P. and Leigh, S. J. (2013). Within-channel flows promote spawning and recruitment of golden perch, Macquaria ambigua ambigua - implications for environmental flow management in the River Murray, Australia. Marine and Freshwater Research 64(7), 618–630.

Books/book chapters

Harris, J. H., Bond, N. R., Closs, G. P., Gehrke, P. C., Nicol, S. J. and Ye, Q. Dynamics of populations in Humphries, P. and Walker, K. [eds.] Ecology of Australian Freshwater Fishes. Chapter 9, pp. 223-244. Collingwood, VIC: CSIRO Publishing, 2013. ISBN: 9780643097438.

Kirkwood R. and Goldsworthy, S. D. Fur Seals and Sea Lions. Australian Natural History Series. Collingwood, VIC: CSIRO Publishing, 2013. ISBN: 9780643096929.

Conference papers and posters

Huveneers, C., Simpfendorfer, C., Kim, S., Semmens, J., Boomer, A., Heupel, M. R., Peddemors, V. M., Hobday, A. J., Stieglitz, T., Pederson, H. G., Vallee, R., Webber, D. and Harcourt, R. G. The influence of depth, orientation, and environmental parameters on the performance and detection range of acoustic receivers. Presented at the 2nd. International Conference on Fish Telemetry (ICFT), 15th July 2013, Grahamstown, South Africa.

Lee, K. A., Huveneers, C., Gimenez, O., Peddemors, V. and Harcourt, R. G. To catch or to sight? A comparison of demographic parameter estimates obtained from mark-recapture and mark-resight models. Presented at the 2nd International Conference on Fish Telemetry (ICFT) 18th July 2013, Grahamstown, South Africa.

Van Ruth, P. and Doubell, M. Bottom-up regulation of primary productivity in a seasonally flushed inverse estuary. Presented at the 27th Australasian Society for Phycology and Aquatic Botany (ASPAB) Annual Conference, 27-29 November 2013, Sydney, New South Wales, Australia.

Client reports

Bice, C. M., Gehrig, S. L. and Zampatti, B. P. (2013). Pike Anabranch Fish Intervention Monitoring: Progress Report 2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000472-1. SARDI Research Report Series No 712. 39pp.

Bice, C. M., Leigh, S. J., Nicol, J. M. and Zampatti, B. P. (2013). Changes in hydraulic complexity in the lower River Murray main channel in relation to flow variability. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000214-1. SARDI Research Report Series No. 709. 32pp.

Bice, C., Wilson, P. and Zampatti, B. (2013). Investigating the population dynamics and ecology of native and exotic fish in response to operation of the Chowilla Creek regulator: monitoring design and requirements. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000261-1. SARDI Research Report Series No. 741. 51pp.

Bice, C., Whiterod, N., Wilson, P., Zampatti, B. and Hammer, M. (2013). The Critical Fish Habitat Project: Reintroductions of threatened fish species in the Coorong, Lower Lakes and Murray Mouth region 2011–2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000348-2. SARDI Research Report Series No 697. 67pp.

Cheshire, K. J. M., Ye, Q., Fredberg, J., Short, D. and Earl, J. (2013). Aspects of reproductive biology of five key fish species in the Murray Mouth and Coorong. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000014-3. SARDI Research Report Series No. 699. 65pp.

Chick, R.C. (2013). South Australian Giant Crab (Pseudocarcinus gigas) Fishery Status Report 2011/12. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000332-3. SARDI Research Report Series No. 691. 20pp.

Deveney, M., Cassey, P., Wiltshire, K. and Prowse, T. (2013). Pacific oyster (Crassostrea gigas Thunberg): assessment of significance of populations in Victoria - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000723-1. SARDI Research Report Series No. 752. 73pp.

Dixon, C.D., Noell, C.J. and Hooper, G.E. (2013). Spencer Gulf Prawn Penaeus (Melicertus) latisulcatus Fishery 2011/12. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000770-6. SARDI Research Report Series No. 685. 115pp.

Dixon, C. D., Noell, C. J., Hooper, G. E. and Ward, T. M. (2013). Blue Crab (Portunus armatus) Fishery 2011/12. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000729–9. SARDI Research Report Series No. 689. 70pp.

Dixon, C., Raptis, J., Gorman, D., Roberts, S., Hooper, G., Bicknell, N., Sorokin, S., Newman, R., Noell, C., Benediktsson, T., Saint, J. and Hill, Wallace. (2013). A collaborative approach to novel by-catch research for rapid development, extension and adoption into a commercial trawl fishery. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000250-1. SARDI Research Report Series No. 643. 47pp.

Earl, J. and Ferguson, G. J. (2013). Yelloweye Mullet (Aldrichetta forsteri) Stock Assessment Report 2011/12. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/001048-1. SARDI Research Report Series No. 737. 54pp.

Ferguson, G. J. (2013) Pipi (Donax deltoides) Fishery. Fishery Stock Assessment Report for PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000550-1. SARDI Research Report Series No. 731. 77pp.

Fowler, A.J., McGarvey, R., Burch, P., Feenstra, J.E., Jackson, W.B. and Lloyd, M.T. (2013). Snapper (Chrysophrys auratus) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. F2007/000523-3. SARDI Research Report Series No. 713. 103pp.

Fowler, A.J., McGarvey, R., Steer, M.A. and Feenstra, J.E. (2013). The South Australian Marine Scalefish Fishery Status Report – Analysis of Fishery Statistics for 2012/13. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000565-8. SARDI Research Report Series No. 747. 44pp.

Frahn, K.A., Gehrig, S. L., Nicol, J.M., and Marsland, K.B. (2013). Lower Lakes vegetation condition monitoring – 2012/2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000370-5. SARDI Research Report Series No. 707. 69pp.

Gehrig, S.L. (2013). Field trial investigating use of drip irrigation to improve condition of black box (Eucalyptus largiflorens) woodlands Phase 1: Infrastructure Test Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000438-1. SARDI Research Report Series No. 706. 74pp.

Gehrig, S.L., Marsland, K.B., Nicol, J.M., and Weedon, J.T. (2013). Chowilla Icon Site – Floodplain Vegetation Monitoring 2013 Interim Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000279-4. SARDI Research Report Series No. 708. 64pp.

Gehrig SL and Thwaites LA (2013). Exploitable Biological Vulnerabilities of Common Carp. PestSmart Toolkit publication, Invasive Animals Cooperative Research Centre, Canberra, Australia. 70pp.

Giblot-Ducray, D. and Bott, N.J. (2013). Development of a plankton sampling protocol for molecular testing of marine pests. Report prepared for Biosecurity SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000281-1. SARDI Research Report Series No. 734. 25pp.

Goldsworthy, S.D., Kennedy, C., Lowther, A., Shaughnessy, P.D., McMahon, C.R. and Burch, P. (2013). Australian sea lion population monitoring at Seal Bay and the Seal Slide, Kangaroo Island: 2011/12 breeding season. Final Report to the Department of Environment, Water and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000216-2. SARDI Research Report Series No. 693. 29pp.

Goldsworthy, S.D., Lavers, J., Carey, M., Lowther, A.D. (2013). Assessment of the status of the Flesh-footed Shearwater in South Australia: population status, subspecies status and foraging ecology. Final Report to Nature Foundation SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000013-1. SARDI Research Report Series No. 736. 9pp.

Goldsworthy, S.D., Lowther, A.D. and Shaughnessy, P.D. (2013). Maintaining the monitoring of pup production at key Australian sea lion colonies in South Australia (2011/12). Final report to the Australian Marine Mammal Centre South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000665-3. SARDI Research Report Series No. 739. 51pp.

Goldsworthy, S.D. and Shaughnessy, P.D. (2013). Abundance of New Zealand fur seal pups in the Cape Gantheaume Wilderness Protection Area, Kangaroo Island: 2011-12 breeding season. Final Report to Nature Foundation SA. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000070-1. SARDI Research Report Series No. 735. 22pp.

Holland KL, Turnadge CJ, Nicol JM, Gehrig SL and Strawbridge AD. (2013) Floodplain response and recovery: comparison between natural and artificial floods, Goyder Institute for Water Research Technical Report Series No. 13/4, Adelaide, South Australia. 62pp.

Huveneers, C., Simpfendorfer, C., and Thomson, R. (2013). Determining the most suitable index of abundance for school shark (Galeorhinus galeus) stock assessment: review and future directions to ensure best recovery estimates. Final Report to the Fisheries Research and Development Corporation FRDC TRF Shark Futures 2011/078. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000479-1. SARDI Research Report Series No. 673. 58pp.

Ivey, A., Sorokin, S. and Ward, T. (2013). The South Australian Miscellaneous Fishery Summary of fisheries data and biological parameters. (Sea urchins; scallops; Turbo; specimen shells; beach-cast seagrass and algae; blood worms, tube worms and beach worms) Fishery Assessment Report for PIRSA Fisheries and Aquaculture - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. F2013/000435-1. SARDI Research Report Series No. 710. 30pp.

Li, X. and Hutchinson, W. (2013). Feasibility Study on the Establishment of Harlequin Fish (Othos dentex) Aquaculture in South Australia. PIRSA Innovation Solution and FRDC Project Executive Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000085-1. SARDI Research Report Series No. 688. 10pp.

Linnane, A., Chick, R.C., Walker, T., Trinnie, F. and Reilly, D. (2013). Victorian Rock Lobster and Giant Crab Fisheries Fishery Status Report - 2011/2012 Fishing Year. Fishery Status Report to Fisheries Victoria. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000434-2. SARDI Research Report Series No. 744. 36pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P. (2013). Southern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2012/13. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000715-7. SARDI Research Report Series No. 749. 23pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hawthorne, P. (2013). Southern Zone Rock Lobster (Jasus edwardsii) Fishery 2011/12. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000276-7. SARDI Research Report Series No. 703. 89pp.

Linnane, A., McGarvey, R., Feenstra, J. and Hoare, M. (2013). Northern Zone Rock Lobster (Jasus edwardsii) Fishery Status Report 2012/13. Status Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000714-7. SARDI Research Report Series No. 750. 22pp.

Linnane, A., McGarvey, R., Feenstra, J and Hoare, M. (2013). Northern Zone Rock Lobster (Jasus edwardsii) Fishery 2011/12. Fishery assessment report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000320-7. SARDI Research Report Series No. 702. 77pp.

Livore, J.P., Ye, Q., Bucater, L. and Short, D. (2013). Fish response to flow in the Coorong during 2012/13. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000486-1. SARDI Research Report Series No. 732. 80pp.

Loo, M. G. K. and McKay, A. (2013). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2011/12 Report for Cleanseas Aquaculture Growout Pty Ltd, Boston Bay, South Australia: Licence Numbers AQ00139 and AQ00235 - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-4. SARDI Research Report Series No. 715. 19pp.

Loo, M. G. K. and McKay, A. (2013). Yellowtail Kingfish (Seriola lalandi) Aquaculture Environmental Monitoring Program 2011/12 Report for Cleanseas Aquaculture Growout Pty Ltd, Arno Bay, South Australia: Licence Numbers AQ00018, AQ00032, FF00037, AQ00072 and AQ00255 - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000207-4. SARDI Research Report Series No. 714. 23pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Karatina Fishing Pty Ltd, Licence Numbers AQ00024 and AQ00055. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 716. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Tony's Tuna International Pty Ltd, Licence Numbers AQ00027, AQ00054, AQ00062, AQ00125 and AQ00169. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 717. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: KIS Tuna Pty Ltd, Licence Numbers AQ00046, AQ00023, AQ00030, AQ00050 and AQ00056. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 718. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Australian Tuna Fisheries Pty Ltd, Licence Numbers AQ00047 and AQ00276. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 719. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Australian Fishing Enterprises Pty Ltd and SAMS Sea Farm Pty Ltd, Licence Numbers AQ00048 and FB00008. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 720. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report:Tony's Tuna International Pty Ltd, Licence Numbers AQ00053, AQ00080 and AQ00081. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 721. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Marnikol Fisheries Pty Ltd, Licence Numbers AQ00057. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 722. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Blaslov Fishing Pty Ltd, Lucky S Fishing Pty Ltd and Sekol Farmed Tuna Pty Ltd, Licence Numbers AQ00060, AQ00059 and AQ00058. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 723. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: SAMS Sea Farm Pty Ltd, Licence Numbers AQ00113 and AQ00123. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 724. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Dinko Tuna Farmers Pty Ltd, Licence Numbers AQ00170. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 725. 20pp.

Loo, M. G. K. and McKay, A. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Eyre Tuna Pty Ltd, Licence Numbers FB00051. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 726. 20pp.

Loo, M. G. K. and Mantilla, L. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: KIS Tuna Pty Ltd, Licence Numbers AQ00202 and AQ00268. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 727. 22pp.

Loo, M. G. K. and Mantilla, L. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: AJKA Pty Ltd and Blaslov Fishing Pty Ltd, Licence Number AQ00240. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 728. 22pp.

Loo, M. G. K. and Mantilla, L. (2013). Southern Bluefin Tuna (Thunnus maccoyii) Aquaculture Environmental Monitoring Program 2012 Report: Australian Tuna Fisheries Pty Ltd, Licence Number AQ00267. Report prepared for the Australian Southern Bluefin Tuna Industry Association Inc - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences). Adelaide. SARDI Publication No. F2009/000585-5. SARDI Research Report Series No. 729. 22pp.

Mackay, A.I., Shaughnessy, P.D. Goldsworthy, S.D. (2013). Australian sea lion abundance in the Bunda Cliffs region, GAB Marine Park. Final Report to the Department of Environment, Water, and Natural Resources. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000642-1. SARDI Research Report Series No. 746. 25pp.

Mayfield, S., Hogg, A. and Burch, P. (2013). Southern Zone Abalone (Haliotis rubra & H. laevigata) Fishery. Fishery Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000552-4. SARDI Research Report Series No. 694. 54pp.

Middleton, J., Doubell, M., James, C., Luick, J. and van Ruth, P. (2013). PIRSA Initiative II: carrying capacity of Spencer Gulf: hydrodynamic and biogeochemical measurement modelling and performance monitoring. Final Report for the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000311-1. SARDI Research Report Series No. 705. 97pp.

McNeil D.G., Gehrig, S.L. and Cheshire, K.J. M. (2013). The protection of drought refuges for native fish in the Murray-Darling Basin. A report to the Murray-Darling Basin Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000176-1. SARDI Research Report Series No. 553. 116pp.

Nayar, S., Bott, K. and Braley, M. (2013). Production trials of the wild strain and mutants of Chloroparva sp. in outdoor raceways for lutein synthesis - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000552-1. SARDI Research Report Series No. 733. 51pp.

Nicol, J.M. (2013). Characterisation of the in stream and riparian plant communities in the Barossa Prescribed Water Resources Area. Data and methods report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000413-1. SARDI Research Report Series No. 745. 25pp.

Nicol, J.M., Gehrig, S.L. and Frahn, K.A. (2013). Establishment success and benefits to the aquatic plant community of planting Schoenoplectus validus around the shorelines of lakes Alexandrina and Albert Data and methods report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000414-1. SARDI Research Report Series No. 711. 27pp.

Nicol JM, Gehrig SL, Frahn KA and Strawbridge AD (2013) Resilience and resistance of aquatic plant communities downstream of Lock 1 in the Murray River. Goyder Institute for Water Research Technical Report Series No. 13/5, Adelaide, South Australia. 57pp.

Noell, C. J. and Ye, Q. (2013). An investigation into the relationship between freshwater flow and production of key species in the South Australian Lakes and Coorong Fishery. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000014-5. SARDI Research Report Series No 701. 64pp.

Sorokin, S. and Brock, E. (2013). Identification and quantification of deepwater epibenthos and bioturbation traces from the Carnarvon Basin, North West Shelf, Western Australia. Report to Environmental Resources Management - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000136-1. SARDI Research Report Series No. 687. 48pp.

Steer, M.A., Gaylard, S. and Loo, M. (2013). Monitoring the relative abundance and biomass of South Australia’s Giant Cuttlefish breeding population. Final Report for the Fisheries Research and Development Corporation. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000074-1. SARDI Research Report Series No. 684. 103pp.

Stobart, B., Mayfield, S., Dent, J. and Matthews, D.J. (2013). Western Zone Blacklip Abalone (Haliotis rubra) Fishery (Region A). Fishery Stock Assessment Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000561-5. SARDI Research Report Series No. 738. 71pp.

Stone, D.A.J. (2013). Indian Ocean Fresh Australia Pty Ltd Report for pilot scale yellowtail kingfish trials - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000518-1. SARDI Research Report Series No. 692. 95pp.

Stone, D.A.J. and Bowyer, J.N. (2013). Final Report. Sustainable Feeds and Feed Management for Yellowtail Kingfish (Seriola lalandi) - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000200-1. SARDI Research Report Series No. 751. 220pp.

Thwaites, L. A., Fredberg, J. F. and Mathwin, R. (2013). Confirming the presence of common carp (Cyprinus carpio) within the Alinta mine complex and Leigh Creek. A brief communication to Biosecurity SA - RESTRICTED. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000533-1. SARDI Research Report Series No. 730. 15pp.

Tsolos, A. (2013). South Australian Charter Boat Fishery Report 2012. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000847-3. SARDI Research Report Series No. 686. 45pp.

Tsolos, A. and Boyle, M. (2013). Interactions with Threatened, Endangered or Protected Species in South Australian Managed Fisheries – 2009/10, 2010/11, and 2011/12. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000544-3. SARDI Research Report Series No. 682. 46pp.

Ward, T.M., Ivey, A. and Burch, P. (2013). Effectiveness of an industry Code of Practice in mitigating the operational interactions of the South Australian Sardine Fishery with the short-beaked common dolphin (Delphinus delphis). Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000726-4. SARDI Research Report Series No. 743. 32pp.

Ward, T.M., Ivey, A.R. and Burch, P. (2013). Spawning biomass of sardine, Sardinops sagax, in waters off South Australia in 2013. Report to PIRSA Fisheries and Aquaculture. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2007/000566-5. SARDI Research Report Series No. 740. 41pp.

Ward, T.M., Ivey, A. and Gorman, D. (2013). Commonwealth Small Pelagic Fishery: Fishery Assessment Report 2012. Report to the Australian Fisheries Management Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2010/000270-4. SARDI Research Report Series No. 696. 100pp.

Wilson, P. J., Gehrig, S. L., Leigh, S. J., Bice, C.M., and Zampatti, B. P. (2013). Fish and aquatic habitats in the Katarapko Anabranch system (‘Katfish’ Demonstration Reach): ‘Before’ intervention monitoring 2013. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2012/000441-2. SARDI Research Report Series No. 742. 45pp.

Wiltshire, K.H. and Deveney, M.R. (2013) Caulerpa taxifolia – 2013 community monitoring in Barker Inlet and Port River. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000409-1. SARDI Research Report Series No. 704. 11pp.

Wiltshire, K.H. and Tanner, J.E. (2013). Marine habitats in the vicinity of Port Hughes boat ramp and possible impacts of a proposed upgrade to boat ramp facilities. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000063-1. SARDI Report Series No. 683. 24pp.

Vilizzi, L., Thwaites, L.A., Smith, B.B., Nicol, J.M. and Madden, C.P. (2013). Integrated Carp Management at Brenda Park Wetland. Final Report for the Murray-Darling Basin Authority. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2013/000232-1. SARDI Research Report Series No. 695. 322pp.

Ye, Q., Aldridge, K., Bucater, L., Bice, C., Busch, B., Cheshire, K.J.M., Fleer, D., Hipsey, M., Leigh, S.J., Livore, J.P. and Nicol, J. (2013). Monitoring of ecological responses to the delivery of Commonwealth Environmental Water in the lower River Murray, South Australia, during 2011 12. A report prepared for Commonwealth Environmental Water Office. South Australian Research and Development Institute, Aquatic Sciences. 11pp.

Ye, Q., Bucater, L. and Short, D. (2013). Coorong fish condition monitoring 2008-2013: Black bream (Acanthopagrus butcheri), greenback flounder (Rhombosolea tapirina) and smallmouthed hardyhead (Atherinosoma microstoma) populations. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2011/000471-3. SARDI Research Report Series No. 748. 91pp.

Ye, Q., Earl, J., Bucater, L., Cheshire, K., McNeil, D., Noell, C. and Short, D. (2013). Flow related fish and fisheries ecology in the Coorong, South Australia. Final Report. South Australian Research and Development Institute (Aquatic Sciences), Adelaide. SARDI Publication No. F2009/000014-2. SARDI Research Report Series No. 698. 84pp.

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