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These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions Discussion Group 1 Methodologies in pest risk assessment: qualitative vs. quantitative approaches in the assessment of introduction potential DG1

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Page 1: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Discussion Group 1

Methodologies in pest risk assessment:

qualitative vs. quantitative approaches in the assessment of introduction potential

DG1

Page 2: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Scope of DG1

In the IPPC Glossary: Introduction is “the entry of a pest resulting in its establishment”

Therefore DG1 is limited to the first two of the four stages of Pest Risk Assessment:

Entry

Establishment

Spread

Impacts

Page 3: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

A great diversity of approaches for assessing entry and establisment potentials

Qualitative approachesRequire risk assessors to choose from categorical

ratings e.g very low, low, moderate, high, very high.

Quantitative approachesCan be used by risk assessors to obtain numerical

probabilities.

Page 4: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

DG1

risk rating methods (e.g. EPPO scheme);

linking risk ratings to quantities/probabilities;

summarising risk ratings and communicating uncertainty.

Qualitative approaches

Page 5: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Sub-elements RatingsQuantity imported annually Low, Med., High

1, 2, 3Survive post harvest treatment Low, Med., High

1, 2, 3Survive shipment Low, Med., High

1, 2, 3Not detected at port or entry Low, Med., High

1, 2, 3Moved to suitable habitat Low, Med., High

1, 2, 3Contact with host material Low, Med., High

1, 2, 3

USDA Guidelines for Pest Risk Assessments

Page 6: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Problems related to qualitative approaches

Ratings not always clearly defined.

No consensus on method for combining ratings.

Page 7: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Clear definitions of ratings must be provided to risk assessors and stakeholders !

Page 8: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Quantity of commodity imported annuallyLow (1 point): < 10 containers/yearMedium (2 points): 10 - 100 containers/yearHigh (3points): > 100 containers/year

Examples of definitions of ratings

from USDA Guidelines

Page 9: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Examples of definitions of ratings

Negligible = 0 (no potential to survive)

Low = 1 (potential to survive on a third or less of the range ofhosts in the PRA area)

Medium = 2 (potential to survive on a third to two thirds of therange of hosts in the PRA area)

High = 3 (potential to survive throughout most or all of the range of hosts in the PRA area)

from Canadian Food Inspection Agency: establishment potential rating guidelines (2002)

Page 10: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Difficult to make generic definitions

Appropriate definitions may depend on pests and areas

Page 11: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

No consensus on methods for combining scores

Page 12: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Sub-element RatingsQuantity imported annually Low, Med., High

1, 2, 3Survive post harvest treatment Low, Med., High

1, 2, 3Survive shipment Low, Med., High

1, 2, 3Not detected at port or entry Low, Med., High

1, 2, 3Moved to suitable habitat Low, Med., High

1, 2, 3Contact with host material Low, Med., High

1, 2, 3

USDA Guidelines for Pest Risk Assessments

Cumulative risk rating

(6-18)6-9 Low

10-14 Med.15-18 High

Page 13: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Biosecurity Australia

Page 14: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

What is the best method for combining scores?

from Hennen (2007)

Page 15: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

DG1

available models;

parameter estimation;

assessing and communicating model accuracy.

Quantitative approaches

Page 16: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

A great diversity of models.

Climate-based systems (NAPPFAST, CLIMEX).

Statistical models (Poisson, binomial, logistic…)

Population ecology model (Leslie matrix…)

Page 17: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

CLIMEX index of establishment suitabilityfor Phytophthora ramorum

Page 18: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

0 1 2 3 4 5 6 7

0.0

0.2

0.4

0.6

0.8

X=Number of successful entry of Tilletia indica in Australia

Pro

babi

lity

Estimation of probability of entryfrom Stansbury et al., 2002

Number of successful entry of Tilletia indica in Australia

Page 19: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Population ecology model for estimating the probability of establishment of the Asian longhornedbeetle (Anoplophora glabripennis)

from Bartell & Nair (2003).

Eggsn1

Larvaen2

Pupaen3

Adultsn4

s1 s2 s3

f4

Page 20: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Parameter estimation is a major problem

Page 21: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Estimation of fecundity rate

θ (eggs/adult/month)

density

14 32 90

from Bartell & Nair (2003).

Page 22: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

How to choose?

DG1

Advantages and disadvantages of each approach for the assessor, decision makers and stakeholders.

How to assess the accuracy of different pest risk assessment methods.

Page 23: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Qualitative approachesEasy to understand.

A qualitative PRA can be done quickly.

Problems of consistency due to - inaccurate definitions of ratings,- methods used for combining scores.

Explicit definitions needed.

Training workshops could be organized to improve the consistency of the assessments made by experts.

Another option: provide evidences only (no ranking).

Page 24: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Quantitative approachesTime and resources can be problematic.

Data not sufficient. Expert knowledge often required for estimating parameters.

Uncertainty can be taken into account using probability distributions.

Models can be used to combine probability of entry and probability of establishment.

Models can be used to identify important knowledge gaps.

Page 25: Discussion Group 1 - European Food Safety Authority · Discussion Group 1 Methodologies in pest risk assessment: qualitative vs.quantitative approaches in the assessment of introduction

These slides were presented in the plenary session and followed by discussion and may not necessarily represent the final conclusions

Toward a comparison of the accuracies of different approaches?

Frequency

Introduction threshold

InvadersNon-Invaders

SensitivitySpecificity

Score/Prediction