dna the nuclear genome consists of dna in the nucleus of eukaryotic cells – this is what we...
TRANSCRIPT
DNA
The Nuclear genome consists of DNA in the nucleus of eukaryotic cells – this is what we typically think of as our Genome:
A Genome is the unique set of chromosomes (or DNA) in one cell of an organism.
• Humans have 2 sets of chromosomes (one from each parent: we are diploid.) • Our genome consists of 3 x109 base pairs• ~25,000 genes (no one knows exactly yet).
Chloroplast Mitochondrion
Nucleus
Plant Cell Animal Cell
Chloroplasts (photosynthesis machinery in plants, algae) have their own DNA (called the Plastid genome)
• 7.5-25 x 103 base pairs • 100-1000 copies depending on whether the cell is actively dividing (more when dividing). • ~100 genes
Mitochondria have their own DNA (called the Mitochondrial genome)
• ~1.7 x 104 base pairs• several copies • ~40 genes
Nucleic Acids
•DNA
•RNA
DNA
•Deoxyribonucleic acid
•double helix
•“intelligent molecule”
•made of nucleotides
One human cell Has ~1 meter of DNA
DNA is partitioned into 46 separate linear molecules (chromosomes, 23 fromeach parent)
All of it is crammed into the cell's nucleus(a few micrometers)
Robert H. Austin, James P. Brody,Edward C. Cox, Thomas Dukeand Wayne Volkmuth FEBRUARY 1997 PHYSICS TODAY
image from the National Human Genome Research Institute
(NHGRI) Genetic Illustrations.
CELL
Nucleus
2 nm
11 nm
300 nm
30 nm
700 nm
1400 nm
DNA
Chromatin
ChromosomeRicharddawkins.net
Nucleotide
•Sugar (deoxyribose)
•Phosphate
•Nitrogenous Base
•adenine (A)
•thymine (T)
•cytosine (C)
•guanine (G)
•DNA is double-stranded
•adenine is always across from thymine
•cytosine is always across from guanine
•bases are held across from each other by weak hydrogen bonds
A T
C G
This OH group is replaced by H (hydrogen atom) inDeoxy-ribose
The Sugar in the “backbone” is
RNA: riboseDNA: deoxyribose
5’
3’
3’
5’
DNA is anti-parallel:
One strand is 5’to 3’
The strand across from itis 3’ to 5’
How do We Know the Structure of DNA?
Watson & Crick 1953
Diffraction PatternsReciprocal Space
http://www.matter.org.uk/diffraction/geometry/3D_reciprocal_lattices.htm
X-ray crystallography revisited
Click here for a groovy interactive experience
(Grab and drag one of the white dots)
DNA X-ray diffraction pattern
X-ray crystallography revisited
34 Angstroms
X-ray crystallography revisited
3.4 Angstroms
X-ray crystallography revisited
X-ray crystallography revisited
X-ray crystallography revisited
X-ray crystallography revisited
X-ray Diffraction pattern → Molecular Structure 1953 Discovery → Nobel Prize
Why x-rays?
Wavelength of diffracted light should match size of object for optimal resolution
A DNA molecule
• not a rigid, static structure (as x-ray diffraction pictures might suggest)
• under constant thermal fluctuations local twisting, stretching, bending, and unwinding of the double-strands.
http://www.uic.edu/classes/phys/phys461/phys450/ANJUM04/X-ray crystallography revisited
The most common DNA structure in solution is B-DNA.
DNA has several helical conformations A-DNA, Z-DNA, S-DNA
Under conditions of• applied force • low hydration ...
A
B
Z
A-DNAShort and broad Low hydrationRight handed helix25.5A diameter2.3A rise/base pair~11 bases/ turn
B-DNALong and thin Most common in solutionRight-handed helix27.3 A diameter3.4 A rise/base pair~ 10 bases/turn
Z-DNA Longer and thinner Left-handed helix18.4 A diameter3.8 A rise/base pair~12 bases/ turn
DNA Replication
•2 strands of DNA “unzip” - separate
•primers are placed on each strand
•DNA polymerase (an enzyme) builds new strands of DNA, using the original strands as templates
RNA
•Ribonucleic acid
•single stranded
•also made of nucleotides
RNA nucleotides
•Sugar (ribose)
•Phosphate
•nitrogenous base
•adenine
•cytosine
•guanine
•uracil
Types of RNA
•mRNA: messenger RNA, carries the DNA code out of the nucleus to the ribosome
•tRNA: transfer RNA, carries amino acids to the ribosome
•rRNA: ribosomal RNA, part of the ribosome
Transcription (making RNA)•DNA unzips
•one strand of DNA acts as a template
•RNA polymerase reads the DNA bases
•RNA nucleotides are placed across from the complimentary DNA bases
•RNA separates from DNA
•DNA zips back up
•The “code” of DNA is the order of the bases
•The code is universal among organisms
•DNA from one organism can be read in the cells of another organism