download anatomist brainvisa

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SOURCES

REPOSITORY CHANGELOG SYSTEMS INSTALLATION DOCUMENTATION TOOLBOXES

Binary packages

Binary packages of all needed software are available here :

The BrainVISA packages contain various useful software:

BrainVISAAnatomist

Image processing and brain segmentation software developped at the SHFJ and

now at Neurospin

Supporting open-source software and libraries needed by our package

Supported systems (binary packages)

System: Version: Status and comments:

Linux/i386 Ubuntu 10.04 OK

Fedora 9 OK

Fedora 8 OK

Fedora 7 OK

Fedora Core 6 OK

Fedora Core 5 OK

Fedora Core 4 OK: 3.1 and 3.2 packages are built on this distribution.

Fedora Core



principle, building from sources should work but we cannot test it.

Windows Vista ? (not tested)

XP (/NT ?) OK

2000 globally OK (except a minor plugin that nobody will need)

98 and earlier not supported

If your system is not listed in the above table and you encounter problems while installing a binary package, please upgrade your system

or build from sources. We can provide binary distributions for a limited set of platforms only. Here are some known incompatibilities

and possible workarounds:

Old Linux systems: libc and some other libraries are too old and not compatible with our binary packages. Compiling might be

possible with a good compiler, but nothing is guaranteed.

OpenGL: There mightbe problems with some 3D graphics cards drivers under Linux or even Winwows. Read the FAQ for

more details.

Source packages

Alternatively you can download the source code. These sources shouldcompile on any UNIX platform with a decent C++ compiler,

including Linux, Solaris, Irix, MacOS X. Compilation is also possible on Windows platforms in the MinGW/ MSysenvironment. Then

follow the instructions on how to compile and install the source distributions.

Note:we do not provide sources for all libraries and programs. Currently we have GPL'd the code needed to build Anatomist (data

structures, IO, visualization). We provide sources for the main general algorithms, but not all algorihm parts.

Sources repository

The sources repository (subversion server) and web interface for bug tracking is accessible for open-source parts and to contributors

since august 2009. This pagedescribes how things are organized.

Installation

You need about 1.5 Gb free disk space to install the BrainVISA pack 4.1. Yes, it's big, but it contains lots of useful things.

Since 4.1 version, there's no setup step anymore. Each package is a file .tar.bz2 (or .zip for windows). You just have to uncompress

this file and the package is ready to use.

Here are the commands to uncompress the package:

On Linux and MacOS:

tar jxvf .tar.bz2

On Windows: unzip the zip file using whatever unzip tool you like (windows XP has one builtin in the system).

For older versions, a setup step is required. Each binary package is a single .tar.gz file, plus a .README file with installation

instructions (it is also provided in the tar file). The instructions here are a copy of this README file:

cd to the directory where to install the top directory of the BrainVISA package, e.g.:

cd /home/yourlogin

uncompress the archive file:

gunzip -c .tar.gz | tar xf -

On Windows, unzip the zip file using whatever unzip tool you like (windows XP has one builtin in the system).

Optionally, change the main direcory name, e.g:

mv brainvisa

run the setup script:

./brainvisa/setup.sh



Optional software

Some BrainVISA processes or modules need some external software to run. See this pagefor details.

Other modules

BrainVISA is modular, other people may add new processes for their own tools.

See the web sitefor more information.

download anatomist brainvisa

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