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Biodiversity Data Journal: mobilization, reuse and integration of small data
Lyubomir D. Penev1,3, Teodor A. Georgiev3, Pavel E. Stoev2,3, Jordan Bisserkov3, Laurence Livermore4, Jeremy Miller 5, David
M. Roberts4 & Vincent S. Smith4
ViBRANTpensoft.net/journals/bdj
1 Institute for Biodiversity and Ecosystem Research, Bulgaria2 National Natural History Museum, Bulgaria
3 Pensoft Publishers4 The Natural History Museum, UK
5 NCB Naturalis, Leiden, The Netherlands
Modern taxonomy as a cyberscience meeting 24-25 July 2013 – Crete, Greece
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Primary data
Drawings: slavenapeneva.com
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Primary data
Publishing and sharing of primary data
RE-USEof
CONTENT
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4 of
Data publishing becomes increasingly important and already affects the policies of the world’s leading science funding
frameworks and organizations.
The concept of “open data” is described in the Protocol for Implementing Open Access Data, the Open Knowledge/Data
Definition, the Panton Principles for Open Data in Science, and the Open Data Manual.
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5 of
White House Office of Science and Technology Policy (OSTP) created the Big Data Research and Development Initiative started 29 March 2012
Directive of the Council of Europe recognising “the strategic importance for Europe’s scientific development of open access to scientific information”
On 17th July 2012, the European Commission outlined measures to improve access to scientific information produced in Europe in a Communication and a Recommendation to the Member States.
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6 of
open data increases transparency and the overall quality of science published data can be verified by other researchers it can be integrated with other datasets it increases the potential for interdisciplinary research duplication of data-collecting efforts and associated costs will be reduced published data can be indexed and made discoverable
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Incentives for authors and institutions to publish data
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After submission (summary)
EOLDryadGBIFPubMed Central
and more . . .
WRI
TIN
GRE
VIEW
ING
PUBL
ICAT
ION
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Life cycle of data published in the BDJ
BIODIVERSITYMANUSCRIPT
Occurrence data Genome dada
Image galleries
Morphometric data
Environmental data
Phylogenetic data
Any other data
XML MARK UP
Structured text (data!)
ARTICLESOccurrence
dataTaxon namesTaxon treatments
Plazi
BHL
Wiki COL
Biblio-graphies
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What will BDJ publish?
• Single taxon treatments and nomenclatural acts
• Local or regional checklists
• Sampling reports and occasional inventories
• Habitat-based checklists and inventories
• Ecological and biological observations
• Single identification keys
• Biodiversity-related databases, including genomic, ecological
and environmental data (data papers)
• Biodiversity-related software tools
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Choose article template
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Authors can choose the review type
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Classifications
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Add author
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Taxon treatment: new species
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Taxon treatment: import material data
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Taxon treatment: upload of images
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Structure of the checklist filed
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External links
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External links
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External links
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Construction of key
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Key preview
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Key features
Biological Codes compliant article templatesNo lower/upper limit of manuscript sizeSemantically enhanced “articles of the future”Integrated with GBIF, EOL, Dryad, Scratchpads, etc.
ALL DATA MATTERS!
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Structured data
Publish, cite,disseminate & archive data
EOLDryad GBIFWiki Species-IdPubMed Plazi
Select, describe & annotate
dataPublication module
Automated import of treatments from Scratchpads and author’s own databases
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Automated registrationMANUSCRIPT SUBMISSION
MANUSCRIPT ACCEPTED
XML Response
ARTICLEPUBLISHED
Taxon name available/valid (effectively published)
XML article metadata
XML Query
Peer review
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Manuscripts are automatically formatted during the writing process
Avoids layout stage, decreases costs and efforts!
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No installation!Just register and go!
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NO Author Guidelines!The tool guides you!
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Thank you for your attention!
ViBRANT
Lyubomir
Penev
Vince Smith
Dave Roberts
Teodor Georgiev
Modern taxonomy as a cyberscience meeting 24-25 July 2013 – Crete, Greece
We Open Access!
Laurence Livermore
Jeremy Miller