Download - Network Visualization: Nifty New Tools
![Page 1: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/1.jpg)
Network Visualization: Nifty New Tools
Doug Luke
Bobbi Carothers
3/10/2016
![Page 2: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/2.jpg)
Gephi
• https://gephi.org/
• Gephi has updated to v 9.1!
• Works on Windows 8
• Can open files from v 8.2, doesn’t quite bring
everything over
![Page 3: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/3.jpg)
Katya Ognyanova Blog
• General tutorial for network vizualization in R
• http://kateto.net/network-visualization
![Page 4: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/4.jpg)
ggnetwork
• R package that works
with ggplot for
network visualization
• https://briatte.githu
b.io/ggnetwork/
• Backbone example
degree
20
40
60
Hospital Network Backbone
![Page 5: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/5.jpg)
Plotly
• Network graphics in R
• https://plot.ly/r/network-graphs/
![Page 6: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/6.jpg)
Plotly and Shiny
• Interactive networks
• http://www.r-bloggers.com/network-
visualization-with-plotly-and-shiny/
![Page 7: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/7.jpg)
networkD3
• JavaScript networks in R
• https://christophergandrud.github.io/networkD3/
![Page 8: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/8.jpg)
JSNetworkX
• Python language software (early development)
• http://felix-kling.de/JSNetworkX/index.html
![Page 9: Network Visualization: Nifty New Tools](https://reader031.vdocument.in/reader031/viewer/2022030320/586a1c191a28ab6b518b6d7e/html5/thumbnails/9.jpg)
Protein Interaction Network Visualizer
• Filter & manipulate protein networks
• http://bmcbioinformatics.biomedcentral.com/art
icles/10.1186/1471-2105-15-129