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Comparative proteome analysis reveals differential regulation of glycolytic and antioxidant
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Narendra Kumar Sharma, Niroj Kumar Sethy, Kalpana Bhargava J Proteomics, 21 February 2013; 79: 277-298. Protein tyrosine nitration in pea roots during development and senescence.
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Roberto Murgas Torrazza, Nan Li, Christopher Young, Firas Kobeissy, Marjorie Chow, Sixue Chen, Volker Mai, Renu Sharma, Mark Hudak, Jonathan Shuster, Josef Neu �eonatology, September 2013; 104(3): 234-242. http://www.karger.com/ProdukteDB/miscArchiv/000/353/721/000353721_sm_Suppl%20Material.pdf The cancer drug tamoxifen – a potential therapeutic treatment for spinal cord injury
Jutatip Guptarak, John E. Wiktorowicz, Rovshan G. Sadygov, Dragoslava Zivadinovi, Adriana A Paulucci-Holthauzen, Leoncio Vergara, and Olivera Nesic-Taylor. Journal of �eurotrauma, 4 September 2013; doi:10.1089/neu.2013.3108. Comparison of Listeria monocytogenes Exoproteomes from Biofilm and Planktonic State:
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Physiological and proteomics analyses of Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.)
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Besma Sghaier-Hammami, José Valero-Galvàn, Mª Cristina Romero-Rodríguez, Rafael Mª Navarro-Cerrillo, Chedly Abdelly, Jesús Jorrín-Novo Plant Physiology and Biochemistry, October 2013; 71: 191–202
Proteomics analysis in Caenorhabditis elegans to elucidate the response induced by tyrosol, an
olive phenol that stimulates longevity and stress resistance.
Ana Cañuelo, and Juan Peragón. Proteomics, October 2013; 13(20): 3064-3075.
Inhibition of peroxisomal hydroxypyruvate reductase (HPR1) by tyrosine nitration.
Corpas, Francisco J., Marina Leterrier, Juan C. Begara-Morales, Raquel Valderrama, Mounira Chaki, Javier López-Jaramillo, Francisco Luque, José M. Palma, María N. Padilla, Beatriz Sánchez-Calvo, Capilla Mata-Pérez, Juan B. Barroso Biochimica et Biophysica Acta (BBA)-General Subjects, November 2013; 1830(11): 4981-4989. Proteomic identification of potential target proteins regulated by the SCFFbp1‐‐‐‐mediated
proteolysis pathway in Fusarium oxysporum.
Cristina Miguel-Rojas, and Concepcion Hera. Molecular Plant Pathology, 16 July 2013; DOI: 10.1111/mpp.12060
Mass spectrometry based proteomic analysis of Leishmania donovani soluble proteins in
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Awanish Kumar, Pragya Misra, Brijesh Sisodia, Ajit Kumar Shasany, Shyam Sundar, and Anuradha Dube. Pathogens and Disease, 2013; doi: 10.1111/2049-632X.12103 Proteomic analysis of mycelium and secretome of different Botrytis cinerea wild-type strains.
Raquel González-Fernández, Kerman Aloria, José Valero-Galván, Inmaculada Redondo, Jesús M Arizmendi, Jesús V. Jorrín-Novo Journal of Proteomics, 2013; http://dx.doi.org/10.1016/j.jprot.2013.06.022 http://www.sciencedirect.com/science/article/pii/S1874391913003394
Identification of candidate biomarkers for hepatocellular carcinoma in plasma of HCV-
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Gustavo Ferrín, Isidora Ranchal, Camilo Llamoza, Manuel L. Rodríguez-Perálvarez, Antonio Romero-Ruiz, Patricia Aguilar-Melero, Pedro López-Cillero Javier Briceño, Jordi Muntané, José L. Montero-Álvarez, Manuel De la Mata Liver International, (2013), online publication 15 August 2013
Proteomic analysis of Mycobacterium tuberculosis isolates resistant to kanamycin and
amikacin.
Bhavnesh Kumar, Divakar Sharma, Prashant Sharma, Vishwa Mohan Katoch, Krishnamurthy Venkatesan, and Deepa Bisht. Journal of Proteomics, 6 December 2013; 94: 68-77.
2012.
Deep amino acid sequencing of native brain GABAA receptors using high-resolution mass
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Ma Ángeles Castillejo, Mónica Fernández-Aparicio and Diego Rubiales J Experimental Botany, January 2012; 63(1): 107-119 http://jxb.oxfordjournals.org/content/63/1/107.full Purification of CFTR for mass spectrometry analysis: identification of palmitoylation and
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Michelle McClure, Lawrence J. DeLucas, Landon Wilson, Marjorie Ray, Steven M. Rowe, Xiaoyun Wu, Qun Dai, Jeong S. Hong, Eric J. Sorscher, John C. Kappes, and Stephen Barnes Protein Engineering Design & Selection, January 2012; 25(1): 7-14. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3276306/ Respuesta radicular a la deficiencia de Fe y la toxicidad por Cd.
Jorge Rodríguez Celma PhD Theses, January 2012; Universidad Zaragoza, CSIS, 211 pp. http://digital.csic.es/handle/10261/43485 Liver protein profiling in chronic hepatitis C: identification of potential predictive markers
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Ariel Basulto Perdomo, Fabiola Ciccosanti, Oreste Lo Iacono, Claudio Angeletti, Marco Corazzari, Nicola Daniele, Angela Testa, Roberto Pisa, Giuseppe Ippolito, Giorgio Antonucci, Gian Maria Fimia, and Mauro Piacentini Journal of Proteome Research, 3 February 2012; 11(2): 717-727. Carotid atherosclerotic plaques: Proteomics study after a low-abundance protein enrichment
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Eric Malaud, Dominique Piquer, Delphine Merle, Laurence Molina, Luc Guerrier, Egisto Boschetti, Max Saussine, Charles Marty-Ané, Bernard Albat, and Jeannette Fareh. Electrophoresis, February 2012; 33(3): 470-482. HIF-1α is critical for hypoxia-mediated maintenance of glioblastoma stem cells by activating
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L Qiang, T Wu, H-W Zhang, N Lu, R Hu, Y-J Wang, L Zhao, F-H Chen, X-T Wang, Q-D You and Q-L Guo Cell Death and Differentiation, February 2012; 19(2): 284–294 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3263503/ Analysis of intracellular expressed proteins of Mycobacterium tuberculosis clinical isolates.
Neelja Singhal, Prashant Sharma, Manish Kumar, Beenu Joshi, and Deepa Bisht. Proteome Science, 1 March 2012; 10(1): 14, 10 pp. http://www.biomedcentral.com/content/pdf/1477-5956-10-14.pdf
Inhibitors of protein phosphatase 1, GADD34 and protein phosphatase 1/GADD34 complex,
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Extracellular sunflower proteins: evidence on non-classical secretion of a jacalin-related
lectin.
Marcela Pinedo, Mariana Regente, Mercedes Elizalde, Ivana Y Quiroga, Luciana A Pagnussat, Jesus Jorrin-Novo, Ana Maldonado, and Laura de la Canal. Protein and Peptide Letters, March 2012; 19(3): 270-276. An in vivo proteomic study of the interaction between Salmonella Typhimurium and porcine
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Melania Collado-Romero, Rodrigo P. Martins, Cristina Arce, Ángela Moreno, Concepción Lucena, Ana Carvajal, Juan J. Garrido J Proteomics, 3 April 2012; 75(7): 2015-2026. A proteomic approach analysing the Arabidopsis thaliana response to virulent and avirulent
Pseudomonas syringae strains
Besma Sghaier-Hammami, Inmaculada Redondo-López, Ana M. Maldonado-Alconada, Sira Echevarría-Zomeño, Jesús V. Jorrín-Novo Acta Physiologiae Plantarum, May 2012; 34(3): 905-922 Identification of �ovel Fluid Biomarkers for Alzheimer's Disease
Rebecca Craig-Schapiro
PhD Theses, 24 May 2012; Washington University in St. Louis, Dept. Biology, 217 pp. http://openscholarship.wustl.edu/etd/685/ C18-Furanfettsäuren – Toxikologische Charakterisierung der Oxidationsprodukte von
konjugierten Linolsäureisomeren.
Imme Lengler PhD Theses, 27 May 2011; Tierärztliche Hochschule Hannover, Hannover, Germany, 154 pp. http://elib.tiho-hannover.de/dissertations/lengleri_ss11.pdf Differential proteomic analysis of human erythroblasts undergoing apoptosis induced by epo-
withdrawal.
Stéphanie Pellegrin, Kate J. Heesom, Timothy J. Satchwell, Bethan R. Hawley, Geoff Daniels, Emile van den Akker, Ashley M. Toye PLoS One, 18 June 2012; 7(6): e38356, 24 pp. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0038356 HtrA2 deficiency causes mitochondrial uncoupling through the F₁₁₁₁F₀₀₀₀-ATP synthase and
consequent ATP depletion.
H Plun-Favreau, V S Burchell, K M Holmström, Z Yao, E Deas, K Cain, V Fedele, N Moisoi, M Campanella, L Miguel Martins, N W Wood, A V Gourine and A Y Abramov Cell Death and Disease, 28 June 2012; 3: e335, 11 pp. http://www.nature.com/cddis/journal/v3/n6/pdf/cddis201277a.pdf
Perfluorooctanoic acid affects the activity of the hepatocyte nuclear factor 4 alpha (H�F4α).
E. Scharmach, T. Buhrke, D. Lichtenstein, and A. Lampen. Toxicology Letters, 20 July 2012; 212(2): 106-112.
Characterisation of a natural variant of the γ-butyrolactone signalling receptor.
Marco Gottelt, Andrew Hesketh, Robert Bunet, Pranav Puri and Eriko Takano BMC Res �otes, 27 July 2012; 5: 379, 17 pp http://www.biomedcentral.com/content/pdf/1756-0500-5-379.pdf Molecular mimicry between HSP 65 of Mycobacterium leprae and cytokeratin 10 of the host
keratin; role in pathogenesis of leprosy.
Itu Singh, Asha Ram Yadav, Keshar Kunja Mohanty, Kiran Katoch, Deepa Bisht, Prashant Sharma, Bhawna Sharma, U.D. Gupta, Utpal Sengupta Cell Immunology, July-August 2012; 278(1-2): 63-75. Papel de la proteomica en la identificacion de proteinas diferenciales en pacientes con SAHS.
B. Jurado Gamez, M.S. Arenas Delarriva, M. Munoz Calero, C. Bujalance Cabrera, L. Caballero Ballesteros, N. Feu Collado, J. L. Gomez-Chaparro, L. Munoz Cabrera La Revista Española de Patología Torácica, July-August 2012; 24 (3): 272-278 http://www.neumosur.net/files/ORIGINAL%203%20peque.pdf Proteins Expressed Differently Between Glucose and Glycerol for Schizochytrium limacinum
SR21.
Yanna Liang, and Nicolas Sarkany. Current Biotechnology, 1 August 2012; 1(3): 227-233. Multiplex proteomics analysis of gender-associated proteins in Brugia malayi.
Daojun Jiang, James Malone, Reid Townsend, Gary Weil, and Benwen Li. International Journal for Parasitology, August 2012; 42(9): 841-850 The role of molecular chaperonins in warm ischemia and reperfusion injury in the steatotic
liver: A proteomic study.
Venkataswarup Tiriveedhi, Kendra D Conzen, Jane Liaw-Conlin, Gundumi Upadhya, James Malone, R Reid Townsend, Robnet Kerns, Jianluo Jia, Krista Csontos, Sabarinathan Ramachandran, Thallachallour Mohanakumar, Christopher D Anderson and William C Chapman BMC Biochemistry, 10 September 2012; 13: 17, 9 pp. http://www.biomedcentral.com/1471-2091/13/17/ Comparative proteomic analysis of BTH and BABA-induced resistance in pea (Pisum sativum)
toward infection with pea rust (Uromyces pisi).
Eleonora Barilli, Diego Rubiales, Ma. Ángeles Castillejo J Proteomics, 18 September 2012; 75(17): 5189-5205. Proteomics and metabolomics of Arabidopsis responses to perturbation of glucosinolate
biosynthesis.
Ya-zhou Chen, Qiu-Ying Pang, Yan He, Ning Zhu, Isabel Branstrom, Xiu-Feng Yan, Sixue Chen. Molecular Plant, September 2012; 5(5): 1138-1150. http://mplant.oxfordjournals.org/content/5/5/1138.full
Protein phosphorylation changes reveal new candidates in the regulation of egg activation and
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Amber R. Krauchunas, Vanessa L. Horner, and Mariana F. Wolfner. Developmental Biology, 1 October 2012; 370(1): 125-134. http://www.sciencedirect.com/science/article/pii/S0012160612004083 Low abundance plasma proteins in labour.
Wei Yuan, Kate Heesom, Robert Phillips, Lina Chen, Jo Trinder, and Andrés López Bernal. Reproduction, 1 October 2012; 144(4): 505-518. http://www.reproduction-online.org/content/144/4/505.full.pdf+html
The Essentiality of Staphylococcal Gcp Is Independent of Its Repression of Branched-Chain
Amino Acids Biosynthesis.
Ting Lei, Junshu Yang, Li Zheng, Todd Markowski, Bruce A. Witthuhn, Yinduo Ji PLoS One, 4 October 2012; 7(10): e46836, 11 pp. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0046836 A proteomic analysis of Arabidopsis thaliana seedling responses to 3-oxo-octanoyl-homoserine
lactone, a bacterial quorum-sensing signal.
Chunjuan Miao, Fang Liu, Qian Zhao, Zhenhua Jia, Shuishan Song Biochemical and Biophysical Research Communications, 19 October 2012; 427(2): 293–298
Infection by chikungunya virus modulates the expression of several proteins in Aedes aegypti
salivary glands.
Stephane Tchankouo-Nguetcheu, Edouard Bourguet, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, and Valerie Choumet. Parasit Vectors, 15 November 2012; 5: 264, 11 pp. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3549772/ Proteomics analysis of date palm leaves affected at three characteristic stages of brittle leaf
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Besma Sghaier-Hammami, Mohammed Najib Saidi, M Ángeles Castillejo, Jesús V. Jorrín-Novo, Ahmed Namsi, Noureddine Drira, and Radhia Gargouri-Bouzid. Planta, November 2012; 236(5):1599-1613. Identification of proteins containing redox-sensitive thiols after PRDX1, PRDX3 and GCLC
silencing and/or glucose oxidase treatment in Hepa 1-6 cells.
Carlos A. Fuentes-Almagro, María-José Prieto-Álamo, Carmen Pueyo, and Juan Jurado. Journal of Proteomics, 21 December 2012; 77: 262-279. Disruption of the S41 Peptidase Gene in Mycoplasma mycoides capri Impacts Proteome
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Ayman B. Allam, Mary B. Brown, and Leticia Reyes. PLoS One, 31 December 2012; 7(12): e51345, 10 pp. http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0051345
Proteomic evaluation of antioxidant activities of nap peptide in rat brain cortex exposed to
chronic hypobaric hypoxia.
Narendra Kumar Sharma, Niroj Kumar Sethy, Mainak Das, Kalpana Bhargava Journal of Proteins and Proteomics, December 2012; 3(3): 217-228 http://www.jpp.org.in/index.php/jpp/article/viewFile/13/13 Proteomic analysis of host responses to Salmonella enterica serovar Typhimurium infection in
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Cristina Arce, Angela Moreno, and Juan Jose Garrido. In: Farm Animal Proteomics, 2012; Editors: Pedro Rodrigues, David Eckersall, André de Almeida; Wageningen Academic Publishers, pp.59-62. Chemical activations of Systemic Acquired Resistance in pea to rust (Uromyces pisi).
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Renata Soares, Catarina Franco, Elisabete Pires, Miguel Ventosa, Rui Palhinhas, Kamila Koci, André Martinho de Almeida, Ana Varela Coelho In: Farm Animal Proteomics: Proceedings of the 3rd Managing Committee Meeting and 2nd
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2011. Identification and Validation of �ovel Cerebrospinal Fluid Biomarkers for Staging Early
Alzheimer's Disease.
Richard J. Perrin, Rebecca Craig-Schapiro, James P. Malone, Aarti R. Shah, Petra Gilmore, Alan E. Davis, Catherine M. Roe, Elaine R. Peskind, Ge Li, Douglas R. Galasko, Christopher M. Clark, Joseph F. Quinn, Jeffrey A. Kaye, John C. Morris, David M. Holtzman, R. Reid Townsend, Anne M. Fagan PLoS One, 12 January 2011; 6(1): e16032, pp. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3020224/
Isolation of analytes. Inventors: Wayne Forrest Patton, Thomas Edwin Miller, Nan Fei Jiang, Michael Paul O'Malley United States Patent: US 7,879,573 B2; Publication Date: 1 February 2011 http://www.google.com.br/patents/US7879573 Consequences of Depletion of the Signal Recognition Particle in Escherichia coli
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David Wickström, Samuel Wagner , Louise Baars, A. Jimmy Ytterberg , Mirjam Klepsch, Klaas J. van Wijk, Joen Luirink and Jan-Willem de Gier The Journal of Biological Chemistry, 11 February 2011; 286: 4598-4609. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3039323/
2D-difference gel electrophoretic proteomic analysis of a cell culture model of alveolar
rhabdomyosarcoma.
Joseph G. Pressey, Christine S. Pressey, Gloria Robinson, Richie Herring, Landon Wilson, David R. Kelly, and Helen Kim J Proteome Research, 4 February 2011; 10(2): 624-636. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3071502/ Identification of sumoylation targets, combined with inactivation of SMT3, reveals the impact
of sumoylation upon growth, morphology, and stress resistance in the pathogen Candida
albicans.
Michelle D. Leach, David A. Stead, Evelyn Argo, and Alistair JP Brown. Molecular Biology of the Cell, 1 March 2011; 22(5): 687-702. http://www.molbiolcell.org/content/22/5/687.long Compositions for mucosal delivery of agents.
Inventors: Philip James Bromley, Lee Nickols Huang United States Patent: US 7906140 B2; Publication Date: 15 March 2011 http://www.google.it/patents/US7906140 The D�A repair complex Ku70/86 modulates Apaf1 expression upon D�A damage.
Francesco Cecconi, Daniela De Zio, Matteo Bordi, Elisa Tino, Chiara Lanzuolo, Eugenio Mora, Fabiola Ciccosanti, Gian Maria Fimia, Valerio Orlando, Elisabetta Ferraro Cell Death and Differentiation, March 2011; 18(3): 516-527. Molecular and proteomic analyses highlight the importance of ubiquitination for the stress
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Michelle D. Leach, David A. Stead, Evelyn Argo, Donna M. MacCallum, Alistair J. P. Brown Molecular Microbiology, March 2011; 79(6): 1574–1593 http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07542.x/pdf MI�D-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of
MAO-B Inhibitors and Theoretical-Experimental Study of G3PDH Protein from Trichomonas
gallinae
Humberto González-Díaz, Francisco Prado-Prado, Xerardo García-Mera, Nerea Alonso, Paula Abeijón, Olga Caamaño, Matilde Yáñez, Cristian R. Munteanu, Alejandro Pazos, María Auxiliadora Dea-Ayuela, María Teresa Gómez-Muñoz, M. Magdalena Garijo, José Sansano, and Florencio M. Ubeira J Proteome Research, 1 April 2011; 10(4): 1698-718
The Effect of Antibiotics on Toxin Gene Expression in PVL-positive Staphylococcus aureus
Strains.
Salah Tofik Balaky PhD theses, April 2011; Durham University, UK. 198 pp. http://etheses.dur.ac.uk/692/ http://etheses.dur.ac.uk/692/1/Thesis_290311.pdf?DDD1+
Analysis of proteomic changes induced upon cellular differentiation of the human intestinal
cell line Caco-2.
Thorsten Buhrke, Imme Lengler, Alfonso Lampen Dev. Growth and Differentiation, April 2011; 53(3): 411-426. http://onlinelibrary.wiley.com/doi/10.1111/j.1440-169X.2011.01258.x/full A composite biochemical system for bacterial nitrate and nitrite assimilation as exemplified
by Paracoccus denitrificans.
Andrew J. Gates, Victor Luque-Almagro, Alan D. Goddard, Stuart J. Ferguson, M. Dolores Roldán and David J. Richardson. Biochemical Journal, 1 May 2011; 435 (3): 743-753. http://www.biochemj.org/bj/435/0743/bj4350743.htm Characterization of the Antibody Response to the Saliva of Phlebotomus papatasi in People
Living in Endemic Areas of Cutaneous Leishmaniasis
Soumaya Marzouki, Mélika Ben Ahmed,Thouraya Boussoffara, Maha Abdeladhim, Nissaf Ben Aleya-Bouafif, Abdelkader Namane, Nabil Belhaj Hamida, Afif Ben Salah, and Hechmi Louzir Am J Tropical Medicine and Hygiene, 5 May 2011; 84(5): 653–661. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3083729/ Studies of variability in Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) through acorn
protein profile analysis.
José Valero Galván, Luis Valledo, Rafael M. Navarro Cerrillo, Eustaquio Gil Pelegrín and Jesus V. Jorrín-Novo J. Proteomics, 12 May 2011; 74(8): 1244-1255 Co-purification of Mac-2 binding protein with galectin-3 and association with prostasomes in
human semen.
Ashley S. Block, Sarika Saraswati, Cheryl F. Lichti, Maha Mahadevan, Alan B. Diekman The Prostate, 15 May 2011; 71(7): 711–721 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3210485/ Dynamic changes in the leaf proteome of a C3 xerophyte, Citrullus lanatus (wild watermelon),
in response to water deficit.
Kinya Akashi, Kazuo Yoshida, Masayoshi Kuwano, Masataka Kajikawa, Kazuya Yoshimura, Saki Hoshiyasu, Naoyuki Inagaki and Akiho Yokota Planta, May 2011; 233(5): 947-960 Oxidative Lung Injury in Virus-Induced Wheezing.
Roberto P. Garofalo Annual Report for Award �umber: W81XWH-10-1-0146, May 2011; 20 pp. http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA554040 Efficacy of the EGFr inhibitor Iressa on development of chemically-induced urinary bladder
cancers: Dose dependency and modulation of biomarkers
Ronald A. Lubet, Yan Lu, Ann M. Bode, Ming You, Zoe M. Verney, Vernon E. Steele, Reid Townsend, M. Margaret Juliana, Clinton J. Grubbs Oncology Reports, May 2011; 25(5): 1389-1397
Dynamic changes in the leaf proteome of a C3 xerophyte, Citrullus lanatus (wild watermelon),
in response to water deficit.
Kinya Akashi, Kazuo Yoshida, Masayoshi Kuwano, Masataka Kajikawa, Kazuya Yoshimura, Saki Hoshiyasu, Naoyuki Inagaki, Akiho Yokota Planta, May 2011; 233(5): 947-960. Viral-mediated inhibition of antioxidant enzymes contributes to the pathogenesis of severe
respiratory syncytial virus bronchiolitis.
Yashoda M. Hosakote, Paul D. Jantzi, Dana L. Esham, Heidi Spratt, Alexander Kurosky, Antonella Casola, and Roberto P. Garofalo American J. Respiratory and Critical Care Medicine, 1 June 2011; 183(11): 1550-1560. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3137144/ Characterization and detection of cellular and proteomic alterations in stable stathmin-
overexpressing, taxol-resistant BT549 breast cancer cells using offgel IEF/PAGE difference
gel electrophoresis.
Manimalha Balasubramani, Chitose Nakao, Guy T. Uechi, John Cardamone, Kathy Kamath, Kristen L. Leslie, Raghavan Balachandran, Leslie Wilson, Billy W. Day, and Mary Ann Jordan. Mutation Research/Genetic Toxicology & Environ. Mutagenesis, 17 June 2011; 722(2): 154-164 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3017223/ Quantification of Cysteinyl S-�itrosylation by Fluorescence in. Unbiased Proteomic Studies.
John E. Wiktorowicz, Susan Stafford, Harriet Rea, Petri Urvil, Kizhake Soman, Alexander Kurosky, J. Regino Perez-Polo, and Tor C. Savidge Biochemistry, 28 June 2011; 50(25):5601-5614 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3133729/ Plant having enhanced root elongation and method for production thereof.
Inventors: Kinya Akashi, Akiho Yokota, Kazuya Yoshimura United States Patent: US 7956241 B2, Publication Date: 07 June 2011 http://www.google.com.mx/patents/US7956241
Responses of the photosynthetic electron transport system to excess light energy caused by
water deficit in wild watermelon.
Satoko Sanda, Kazuo Yoshida, Masayoshi Kuwano, Tadayuki Kawamura, Yuri Nakajima Munekage, Kinya Akashi, Akiho Yokota Physiologia Plantarum, July 2011; 142(3): 247-264. Quantitative proteome profiling informs on phenotypic traits that adapt Leishmania donovani
for axenic and intracellular proliferation.
Pascale Pescher, Thierry Blisnick, Philippe Bastin, Gerald F. Späth Cellular Microbiology, July 2011; 13(7): 978–991 http://onlinelibrary.wiley.com/doi/10.1111/j.1462-5822.2011.01593.x/full Studies of variability in Holm oak (Quercus ilex subsp. ballota [Desf.] Samp.) through acorn
protein profile analysis.
José Valero Galván, Luis Valledor, Rafael M. Navarro Cerrillo, Eustaquio Gil Pelegrín, and Jesus V. Jorrín-Novo. Journal of Proteomics, 12 August 2011; 74(8): 1244-1255.
Identification of native Escherichia coli BL21 (DE3) proteins that bind to immobilized metal
affinity chromatography under high imidazole conditions and use of 2D-DIGE to evaluate
contamination pools with respect to recombinant protein expression level.
Patrick Bartlow, Guy T. Uechi, John J. Cardamone Jr., Tamanna Sultana, McKinzie Fruchtl, Robert R. Beitle and Mohammad M. Ataai Protein Expression and Purification, August 2011; 78(2): 216-224 Proteomics in the liver of gilthead sea bream (Sparus aurata) to elucidate the cellular response
induced by the intake of maslinic acid.
Eva Rufino-Palomares, Fernando J. Reyes-Zurita, Carlos A. Fuentes-Almagro, Manuel de la Higuera, José A. Lupiáñez, Juan Peragón Proteomics, August 2011; 11(16): 3312-3325. A proteomic study of in-root interactions between chickpea pathogens: the root-knot
nematode Meloidogyne artiellia and the soil-borne fungus Fusarium oxysporum f. sp. ciceris
race 5.
Juan E. Palomares-Rius, Pablo Castillo, Juan A. Navas-Cortés, Rafael M. Jiménez-Díaz, Manuel Tena J. Proteomics, 6 September 2011; 74(10): 2034-2051 Identification of haptoglobin and apolipoprotein A-I as biomarkers for high altitude
pulmonary edema.
Yasmin Ahmad, Dhananjay Shukla, Iti Garg, Narendra K. Sharma, Saurabh Saxena, V. K. Malhotra, Kalpana Bhargava Functional & Integrative Genomics, September 2011; 11(3): 407-417 Leptin and Fasting Regulate Rat Gastric Glucose-Regulated Protein 58.
Susana B. Bravo, Jorge E. Caminos, Carmen R. González, María J. Vázquez, María F. Garcés, Libia A. Cepeda, María ER García-Rendueles, Antonio Iglesias-Gamarra, Consuelo Gómez-Díaz,
Miguel Lopez, Justo P. Castaño, Carlos Diéguez, and Rubén Nogueiras International Journal of Peptides, 30 October 2011; 2011: 969818, 11 pp. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3205658/
High temperature triggers the metabolism of S-nitrosothiols in sunflower mediating a process
of nitrosative stress which provokes the inhibition of ferredoxin–�ADP reductase by tyrosine
nitration.
Mounira Chaki, Raquel Valderrama, Ana m. Fernández-Ocaña, Alfonso Carreras, Maria V. Gómez-Rodríguez, Javier López-Jaramillo, Juan C. Begara-Morales, Beatriz Sánchez-Calvo, Francisco Luque, Marina Leterrier, Francisco J. Corpas, Juan B. Barroso Plant, Cell & Environment, November 2011; 34(11): 1803-1818. Proteomic profiling of adipose tissue from Zmpste24-/- mice, a model of lipodystrophy and
premature aging, reveals major changes in mitochondrial function and vimentin processing.
Juan R. Peinado, Pedro M. Quirós, Marina R. Pulido, Guillermo Mariño, Maria L. Martínez-Chantar, Rafael Vázquez-Martínez, José M. P. Freije, Carlos López-Otín, and María M. Malagón Molecular & Cellular Proteomics, November 2011; 10(11): M111.008094. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3226399/?report=printable
Identification of immuno-reactive adult Angiostrongylus vasorum proteins using mass
spectrometry.
Ryan Jefferies, Eric R. Morgan, Susan Shaw, and Kate Heesom. Molecular and Biochemical Parasitology, November 2011; 180(1): 56-61. Concomitant inhibition of HSP90, its mitochondrial localized homologue TRAP1 and HSP27
by green tea in pancreatic cancer HPAF-II cells.
Lifeng Zhang, Eric Pang, Rachel R. Ogorzalek Loo, Jianyu Rao, Vay-Liang W. Go, Joseph A. Loo, Qing-Yi Lu Proteomics, December 2011; 11(24): 4638–4647 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3517060/ A composite biochemical system for bacterial nitrate and nitrite assimilation as exemplified
by Paracoccus denitrificans.
Andrew J Gates, Victor Luque-Almagro, Alan Goddard, Stuart John Ferguson, María Dolores Roldán, David J Richardson Biochemical Journal, 2011; 435(3): 743-753 Viral-mediated Inhibition of Antioxidant Enzymes Contributes to the Pathogenesis of Severe
Respiratory Syncytial Virus Bronchiolitis.
Yashoda M. Hosakote, Paul D. Jantzi, Dana L. Esham, Heidi Spratt, Alexander Kurosky, Antonella Casola and Roberto P. Garofalo American Journal of Respiratory and Critical Care Medicine, 2011; 183: 1550-1560. Characterization of the Antibody Response to the Saliva of Phlebotomus papatasi in People
Living in Endemic Areas of Cutaneous Leishmaniasis.
Soumaya Marzouki, Mélika Ben Ahmed, Thouraya Boussoffara, Maha Abdeladhim, Nissaf Ben Aleya-Bouafif, Abdelkader Namane, Nabil Belhaj Hamida, Afif Ben Salah and Hechmi Louzir American J Tropical Med Hygiene, 2011; 84(5): 653-661 A composite biochemical system for bacterial nitrate and nitrite assimilation as exemplified
by Paracoccus denitrificans.
David Richardson, Andrew Gates, Victor Luque-Almagro, Alan Goddard, Stuart Ferguson, María Roldán Peer Repository Göttingen, 2011 http://repository.peerproject.eu:8080/jspui/handle/123456789/14103
2010.
Proteomics Analysis of the �ucleolus in Adenovirus-infected Cells.
Yun W. Lam, Vanessa C. Evans, Kate J. Heesom, Angus I. Lamond and David A. Matthews Molecular & Cellular Proteomics, 1 January 2010; 9(1): 117-130
A novel role for the adipokine visfatin/pre-B cell colony-enhancing factor 1 in prostate
carcinogenesis.
Snehal T. Patel, Tina Mistry, James E.P. Brown, Janet E. Digby, Raghu Adya, Ken M. Desai and Harpal S. Randeva Peptides, January 2010; 31(1): 51-57 Airway proteins involved in bacterial clearance susceptible to cathepsin G proteolysis.
M. M. Farberman, K. T. Akers, J. P. Malone, P. Erdman-Gilmore, R. R. Townsend and T. Ferkol Eur Respiratory Journal, 1 February 2010; 35(2): 410-417 Pharmacological Impairment of S-�itrosoglutathione or Thioredoxin Reductases Augments
Protein S-�itrosation in Human Hepatocarcinoma Cells.
Laura M. López-Sánchez, Fernando J. Corrales, Chary López-Pedrera, Enrique Aranda and Antonio Rodríguez-Ariza Anticancer Research, 1 February 2010; 30(2): 415-421
Galectin-3 is associated with prostasomes in human semen.
Jennifer L. Jones, Sarika Saraswati, Ashley S. Block, Cheryl F. Lichti, Maha Mahadevan and Alan B. Diekman Glycoconjugate Journal, February 2010; 27(2): 227-236 Identification of candidate biomarkers in ovarian cancer serum by depletion of highly
abundant proteins and differential in-gel electrophoresis.
John D. Andersen, Kristin L. M. Boylan, Feifei S. Xue, Lorraine B. Anderson, Bruce A. Witthuhn, Todd W. Markowski, LeeAnn Higgins, Amy P. N. Skubitz Electrophoresis, February 2010; 31(4): 599–610
Cytoskeletal proteins bound to heat-shock protein 70 may elicit resistance to simian
immunodeficiency virus infection of CD4+ T cells.
Lesley A. Bergmeier, Kaboutar Babaahmady, Jeffrey Pido-Lopez, Kate J. Heesom, Charles G. Kelly, Thomas Lehner Immunology, April 2010; 129(4): 506–515
GLO1 overexpression in human malignant melanoma.
Warner B. Bair III; Christopher M.Cabello; Uchida, Koji; Bause, Alexandra S.; Wondrak, Georg T. Melanoma Research, April 2010; 20(2): 85-96 Phosphoproteome dynamics reveal heat-shock protein complexes specific to the Leishmania
donovani infectious stage
Miguel A. Morales, Reiko Watanabe, Mariko Dacher, Philippe Chafey, José Osorio y Fortéa, David A. Scott, Stephen M. Beverley, Gabi Ommen, Joachim Clos, Sonia Hem, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, and Gerald F. Späth Proceedings of �ational Academy of Science U S A, 4 May 2010; 107(18): 8381-8386 Regulation of antibiotic production in Streptomyces coelicolor: A bacterial hormone receptor
variant and the awakening of a cryptic antibiotic biosynthesis gene cluster.
Marco Gottelt Ph.D. Theses, University of Groningen, 7 May 2010; pp. 1-199
Proteomic analysis of outer membrane proteins of Edwardsiella tarda
G. Kumar, P. Sharma, G. Rathore, D. Bisht, U. Sengupta Journal of Applied Microbiology, June 2010; 108(6): 2214–2221 In vivo assessment and potential diagnosis of xenobiotics that perturb the thyroid pathway:
Proteomic analysis of Xenopus laevis brain tissue following exposure to model T4 inhibitors.
Jose Serrano, LeeAnn Higgins, Bruce A. Witthuhn, Lorraine B. Anderson, Todd Markowski, Gary W. Holcombe, Patricia A. Kosian, Joseph J. Korte, Joseph E. Tietge and Sigmund J. Degitz Comparative Biochemistry Physiology Part D Genomics Proteomics, June 2010; 5(2):138-150
Changes induced by two levels of cadmium toxicity in the 2-DE protein profile of tomato
roots.
Jorge Rodríguez-Celma, Rubén Rellán-Álvarez, Anunciación Abadía, Javier Abadía and Ana-Flor López-Millán Journal of Proteomics, 5 August 2010; 73(9): 1694-1706 Mesencephalic and striatal protein profiles in mice over-expressing glucose-6-phosphate
dehydrogenase in dopaminergic neurons.
Antonio Romero-Ruiz, Rebeca Mejías, Juan Díaz-Martín, José López-Barneo and Lin Gao Journal of Proteomics, 5 August 2010; 73(9): 1747-1757
Combined Proteomic and Transcriptomic Analysis Identifies Differentially Expressed
Pathways Associated to Pinus radiata �eedle Maturation. Luis Valledor, Jesús V. Jorrín-Novo, Jose Luis Rodríguez, Christof Lenz, Mónica Meijón, Roberto Rodríguez and Maria Jesús Ca al J Proteome Research, 6 August 2010; 9(8): 3954-3979.
Abscisic acid and sucrose increase the protein content in date palm somatic embryos, causing
changes in 2-DE profile.
Besma Sghaier-Hammami, Jesús V. Jorrín-Novo, Radhia Gargouri-Bouzid and Noureddine Drira Phytochemistry, August 2010; 71(11-12): 1223-1236 An in vitro infection model system to study proteins expressed during interaction of
mycobacterium with murine macrophages.
Neelja Singhal, Prashant Sharma, Bhavnesh Kumar, Utpal Sengupta, Krishnamurthy Venkatesan, Deepa Bisht Advances in Bioscience and Biotechnology, August 2010; 1: 180-184
Two-dimensional gel electrophoresis-based proteomic analysis of the Medicago truncatula–
rust (Uromyces striatus) interaction.
M.Á. Castillejo, R. Susín, E. Madrid, M. Fernández-Aparicio, J.V. Jorrín, D. Rubiales Annals of Applied Biology, September 2010; 157(2): 243–257 Role of Peroxiredoxin 1 and Peroxiredoxin 4 in Protection of Respiratory Syncytial Virus-
Induced Cysteinyl Oxidation of �uclear Cytoskeletal Proteins.
Mohammad Jamaluddin, John E. Wiktorowicz, Kizhake V. Soman, Istvan Boldogh, Jeffrey D. Forbus, Heidi Spratt, Roberto P. Garofalo, and Allan R. Brasier
Journal of Virology, September 2010; 84(18): 9533-9545
The stromal-vascular fraction of adipose tissue contributes to major differences between
subcutaneous and visceral fat depots.
Juan R. Peinado, Yolanda Jimenez-Gomez, Marina R. Pulido, Maria Ortega-Bellido, Cesar Diaz-Lopez, Francisco J. Padillo, Jose Lopez-Miranda, Rafael Vazquez-Martínez, María M. Malagón Proteomics, September 2010; 10(18): 3356–3366 Bryostatin-1 Synergizes with Histone Deacetylase Inhibitors to Reactivate HIV-1 from
Latency.
Moises Perez, Amaya G. de Vinuesa, Gonzalo Sanchez-Duffhues, Nieves Marquez, M. L.u.z. Bellido, M. Angeles Munoz-Fernandez, Santiago Moreno, Trevor P. Castor, Marco A. Calzado, Eduardo Munoz Current HIV Research, September 2010; 8(6): 418-429 Mesenchymal stem cell-secreted superoxide dismutase promotes cerebellar neuronal survival
Kevin Kemp, Kelly Hares, Elizabeth Mallam, Kate J. Heesom, Neil Scolding, Alastair Wilkins J �eurochemistry, September 2010; 114(6):1569-1580. Proteome mapping of overexpressed membrane-enriched/cytosolic-proteins in Sodium
Antimony Gluconate resistant clinical isolate of Leishmania donovani.
Awanish Kumar, Brijesh Sisodia, Pragya Misra, Shyam Sundar, Ajit Kumar Shasany, Anuradha Dube British Journal of Clinical Pharmacology, October 2010; 70(4): 609-617. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2950996/ Streptomycin induced protein expression analysis in Mycobacterium tuberculosis by two-
dimensional gel electrophoresis & mass spectrometry.
Sharma Prashant, Kumar Bhavnesh, Singhal Neelja, Katoch Vishwa Mohan, Venkatesan Krishnamurthy, Chauhan Ddevendra Singh, Bisht Deepa. Indian J Med Research, October 2010; 132: 400-408. http://icmr.nic.in/ijmr/2010/october/9.pdf Identification of osteocyte-selective proteins.
Dayong Guo, Andrew Keightley, Jill Guthrie, Patricia A. Veno, Stephen E. Harris, Lynda F. Bonewald Proteomics, October 2010; 10(20): 3688-3698 Identification of Potential Diagnostic Markers among Burkholderia cenocepacia and B.
multivorans Supernatants.
Tiffany Mott, Michael Soler, Sierrah Grigsby, Ronald Medley, and Gregory C. Whitlock Journal of Clinical Microbiology, November 2010; 48(11): 4186-4192 Proteomic analysis of streptomycin resistant and sensitive clinical isolates of Mycobacterium
tuberculosis.
Prashant Sharma, Bhavnesh Kumar, Yash Gupta, Neelja Singhal, Vishwa Mohan Katoch, Krishnamurthy Venkatesan, Deepa Bisht Proteome Science, 18 November 2010; 8: 59.
The Decreased Expression of Peroxisome Proliferator-activated Receptors δ (PPARδ) is
Reversed by Digoxin in the Heart of Diabetic Rats
S. C. Fan, B. C. Yu, Z. C. Chen, L. J. Chen, H. H. Chung, J. T. Cheng Horm Metab Research, 2010; 42(9): 637-642 Proteomic analysis identifies prohibitin down-regulation as a crucial event in the
mitochondrial damage observed in HIV-infected patients.
Ciccosanti Fabiola, Corazzari Marco, Soldani Fabio, Matarrese Paola, Pagliarini Vittoria, Iadevaia Valentina, Tinari Antonella, Zaccarelli Mauro, Perfettini Jean-Luc, Malorni Walter, Kroemer Guido, Antinori Andrea, Fimia Gian Maria, Piacentini Mauro. Antiviral Therapy, 2010; 15(3): 377-390. 2009. Analysis of the Differential Host Cell �uclear Proteome Induced by Attenuated and Virulent
Hemorrhagic Arenavirus Infection
Gavin C. Bowick, Heidi M. Spratt, Alison E. Hogg, Janice J. Endsley, John E. Wiktorowicz, Alexander Kurosky, Bruce A. Luxon, David G. Gorenstein and Norbert K. Herzog Journal of Virology, January 2009; 83(2): 687-700. Characterisation of two antibodies to oligomeric Aβ and their use in ELISAs on human brain
tissue homogenates Zoë van Helmond, Kate Heesom, Seth Love Journal of �euroscience Methods, 30 January 2009; 176(2): 206-212 Function and ribosomal localization of aIF6, a translational regulator shared by archaea and
eukarya
Dario Benelli, Stefano Marzi, Carmine Mancone, Tonino Alonzi, Anna la Teana and Paola Londei �ucleic Acids Research, January 2009; 37(1):256-267 The Asialoglycoprotein Receptor Regulates Levels of Plasma Glycoproteins Terminating with
Sialic Acid α2,6-Galactose.
Lindsay M. Steirer, Eric I. Park, R. Reid Townsend, and Jacques U. Baenziger J. Biol. Chemistry, 6 February 2009; 284(6): 3777-3783 Signaling to the apical membrane and to the paracellular pathway: changes in the cytosolic
proteome of Aedes Malpighian tubules.
Klaus W. Beyenbach, Sabine Baumgart, Kenneth Lau, Peter M. Piermarini, Sheng Zhang J Exp Biology, February 2009; 212(3): 329-340
Proteomic and phenotypic profiling of the amphibian pathogen Batrachochytrium
dendrobatidis shows that genotype is linked to virulence.
Matthew C. Fisher, Jaime Bosch, Zhikang Yin, David A. Stead, Janet Walker, Laura Selway, Alistair J. P. Brown, Louise A. Walker, Neil A. R. Gow, Jason E. Stajich, Trenton W. J. Garner Molecular Ecology, February 2009; 18(3): 415–429,
Proteomic analysis of anoxia tolerance in the developing zebrafish embryo Bryce A. Mendelsohn, James P. Malone, R. Reid Townsend, Jonathan D. Gitlin Comparative Biochemistry & Physiology, D: Genomics & Proteomics, March 2009; 4(1): 21-31 Proteomic changes induced by knockdown of stathmin in bt549 breast cancer cell lines.
Song, Yumin; MS Thesis, School of Pharmacy University of Pittsburgh, 20 April 2009; pp.1-48 http://challenger.library.pitt.edu/ETD/available/etd-04242009-001103/ Analysis of the periplasmic proteome of Pseudomonas aeruginosa, a metabolically versatile
opportunistic pathogen.
Francesco Imperi , Fabiola Ciccosanti , Ariel Basulto Perdomo, Federica Tiburzi, Carmine Mancone, Tonino Alonzi, Paolo Ascenzi, Mauro Piacentini, Paolo Visca, Gian Maria Fimia Proteomics, April 2009; 9(7): 1901–1915 Proteomic analysis of the development and germination of date palm (Phoenix dactylifera L.)
zygotic embryos.
Besma Sghaier-Hammami, Luis Valledor, Noureddine Drira, Jesús V. Jorrin-Novo Proteomics, May 2009; 9(9): 2543-2554 Identification and isolation of cD�A clones encoding the abundant secreted proteins in the
saliva proteome of Culicoides nubeculosus.
C. L. Russell, K. J. Heesom, C. J. Arthur, C. R. Helps, P. S. Mellor, M. J. Day, S. Torsteinsdottir, T. S. Björnsdóttir and A. D. Wilson Insect Mol Biology, June 2009; 18(3): 383-393 Differential composition of culture supernatants from wild-type Brucella abortus and its
isogenic virB mutants.
M. Victoria Delpino, Diego J. Comerci, Mary Ann Wagner, Michel Eschenbrenner, Cesar V. Mujer, Rodolfo A. Ugalde, Carlos A. Fossati, Pablo C. Baldi and Vito G. DelVecchio Arch Microbiology, July 2009; 191(7): 571-581 Identification of total and differentially expressed excreted–secreted proteins from
Trypanosoma congolense strains exhibiting different virulence and pathogenicity Pascal Grébaut, Paul Chuchana, Jean-Paul Brizard, Edith Demettre, Martial Seveno, Géraldine Bossard, Patrick Jouin, Philippe Vincendeau, Zakaria Bengaly, Alain Boulangé, Gérard Cuny, Philippe Holzmuller International Journal for Parasitology, August 2009; 39(10): 1137-1150 Comparative Transcriptome and Proteome Analysis of Ha-ras and B-raf Mutated Mouse
Liver Tumors.
Benjamin Rignall, Carina Ittrich, Eberhard Krause, Klaus E. Appel, Albrecht Buchmann and Michael Schwarz J Proteome Research, August 2009; 8(8): 3987-3994. Analysis of the differential proteome of human erythroblasts during in vitro erythropoiesis by
2-D DIGE.
Ben M. Richardson, Kate J. Heesom, Steve F. Parsons, Dave J. Anstee, Jan Frayne Proteomics, September 2009; 3(9): 1123–1134,
Vesicular fractions of sunflower apoplastic fluids are associated with potential exosome
marker proteins.
Mariana Regentea, Georgina Corti-Monzóna, Ana María Maldonadob, Marcela Pinedoa, Jesús Jorrínb, Laura de la Canal FEBS Letters, 20 October 2009; 583(20): 3363-3366 An Effective Method for the Analysis of Human Plasma Proteome using Two-dimensional Gel
Electrophoresis.
Yasmin Ahmad and Narendra Sharma J Proteomics Bioinformatics, 2 November 2009; 2(12): 495-499 Comparative 2-DE proteomic analysis of date palm (Phoenix dactylifera L.) somatic and
zygotic embryos.
Besma Sghaier-Hammami, Noureddine Drira and Jesús V. Jorrín-Novo Journal of Proteomics, 2 November 2009; 73(1): 161-177 Protein targets of tyrosine nitration in sunflower (Helianthus annuus L.) hypocotyls.
Mounira Chaki, Raquel Valderrama, Ana M. Fernández-Ocaña, Alfonso Carreras, Javier López-Jaramillo, Francisco Luque, José M. Palma, José R. Pedrajas, Juan C. Begara-Morales, Beatriz Sánchez-Calvo, María V. Gómez-Rodríguez, Francisco J. Corpas and Juan B. Barroso J Exp Botany, November 2009; 60(15): 4221-4234. Metodología y aplicaciones en proteómica clínica.
Ángel San Miguel-Hernández , Francisco J. Martín-Gil & Alicia Armentia-Medina Diálisis y Trasplante, October-December 2009; 30(4): 139-143 Toxicogenomic analysis of �-nitrosomorpholine induced changes in rat liver: Comparison of
genomic and proteomic responses and anchoring to histopathological parameters.
A Oberemm, H-J Ahr, P Bannasch, H Ellinger-Ziegelbauer, M Glückmann, J Hellmann, C Ittrich, A Kopp-Schneider, P-J Kramer, E Krause, M Kröger, E Kiss, H-B Richter-Reichhelm, G Scholz, K Seemann, M Weimer, U Gundert-Remy Toxicology and applied pharmacology, 1 December 2009; 241(2): 230-245 Differential protein expression in early Atlantic cod larvae (Gadus morhua) in response to
treatment with probiotic bacteria.
Hólmfrídur Sveinsdóttir, Agnar Steinarsson and Ágústa Gudmundsdóttir Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, December 2009; 4(4): 249-254 Curcumin Cross-links Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)
Polypeptides and Potentiates CFTR Channel Activity by Distinct Mechanisms.
Karen Bernard, Wei Wang, Rajeshwar Narlawar, Boris Schmidt, and Kevin L. Kirk J. Biol. Chemistry, 6 November 2009; 284(45): 30754-30765
2008. Phosphoproteomic analysis of Leishmania donovani pro- and amastigote stages. Miguel A. Morales, Reiko Watanabe, Christine Laurent, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, Gerald F. Späth Proteomics, January 2008; 8(2): 350 – 363
P144(F)-S. Overview of Cornell Proteomics and Mass Spectrometry Core Facility
S. Zhang, R. Sherwood, S. Baumgart, C. Ptak, J. Scott; Biomol Tech, February 2008; 19(1): 46 PMCID: PMC2359594 P173-S Analysis of Autophosphorylation of n-Src Tyrosine Kinase Using Difference Gel
Electrophoresis
V. Marin, B. R. Grovemen, D. Terry, E. A. Bienkiewcz, I. S. Isaac, X. Yu; Biomol Tech. 2008 February; 19(1): 55 PMCID: PMC2359594 P184-T Increased Sequence Coverage of Proteins by MALDI-TOF-TOF Is Achieved by
Automated Modification of Lysine Residues Using ProGest Apparatus
N. P. Skiba, S. M. Gospe, B. Reidel, I. Isaac; Biomol Tech. 2008 February; 19(1): 59-60 PMCID: PMC2359594 Programmed Proteome Response for Drought Avoidance/Tolerance in the Root of a C3
Xerophyte (Wild Watermelon) Under Water Deficits
Yoshimura, Kazuya; Masuda, Akiko; Kuwano, Masayoshi; Yokota, Akiho; Akashi, Kinya Plant and Cell Physiology, February 2008; 49(2): 226-241 Metaproteomics Provides Functional Insight into Activated Sludge Wastewater Treatment
Paul Wilmes, Margaret Wexler and Philip L. Bond PLoS One, 12 March 2008; 3(3): e1778, 11 pp.
Identification of abundant proteins and potential allergens in Culicoides nubeculosus salivary
glands A.D. Wilson, K.J. Heesom, W.J. Mawby, P.S. Mellor, C.L. Russell Veterinary Immunology and Immunopathology, 15 March 2008; 122(1-2): 94-103 Molecular Mechanisms of Action of Imatinib Mesylate in Human Ovarian Cancer: A
Proteomic Analysis.
Bhavinkumar B. Patel, Yin A.He, Xin- Ming Li, Andrey Frolov, Lisa Vanderveer, Carolyn Slater, Russell J. Schilder, Margaret von Mehren, Andrew K. Godwin, Anthony T. Yeung
Cancer Genomics Proteomics, 1 May 2008; 5(3-4): 137-149. Effects of SecE Depletion on the Inner and Outer Membrane Proteomes of Escherichia coli.
Louise Baars, Samuel Wagner, David Wickström, Mirjam Klepsch, A. Jimmy Ytterberg, Klaas J. van Wijk, and Jan-Willem de Gier Journal of Bacteriology, May 2008; 190(10): 3505-3525
Functional genomics in a non-model crop: transcriptomics or proteomics?
Sebastien Christian Carpentier, Bert Coemans, Nancy Podevin, Kris Laukens, Erwin Witters, Hideo Matsumura, Ryohei Terauchi, Rony Swennen, Bart Panis Physiologia Plantarum, June 2008; 133(2): 117–130,
Changes in the proteome of functional and regressing corpus luteum during pregnancy and
lactation in the rat.
González-Fernández R, Martínez-Galisteo E, Gaytán F, Bárcena JA, Sánchez-Criado JE. Biol. Reproduction, July 2008; 79(1): 100-14 http://www.biolreprod.org/content/79/1/100.full.pdf Comprehensive proteome analysis of Mycobacterium ulcerans and quantitative comparison of
mycolactone biosynthesis.
Petra Tafelmeyer, Christine Laurent, Pascal Lenormand, Jean-Claude Rousselle, Laurent Marsollier, Gilles Reysset, Runxuan Zhang, Albert Sickmann, Timothy P. Stinear, Abdelkader Namane, Stewart T. Cole Proteomics, August 2008; 8(15): 3124–3138 Improved image analysis workflow for 2-D gels enables large-scale 2-D gel-based proteomics
studies - COPD biomarker discovery study.
Julia E. Bandow, John D. Baker, Matthias Berth, Cory Painter, Osvaldo J. Sepulveda, Kelly A. Clark, Iain Kilty, Ruth A. VanBogelen Proteomics, August 2008, 8(15): 3030 - 3041 Quantitative Proteomics of a Chloroplast SRP54 Sorting Mutant and Its Genetic Interactions
with CLPC1 in Arabidopsis.
Heidi Rutschow, A. Jimmy Ytterberg, Giulia Friso, Robert Nilsson, and Klaas J. van Wijk Plant Physiology, September 2008; 148(1): 156–175. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2528104/ Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll
and bundle sheath cells
Wojciech Majeran, Boris Zybailov, A. Jimmy Ytterberg, Jason Dunsmore, Qi Sunc, Klaas J. van Wijk Mol Cell Proteomics, September 2008; 7(9): 1609-38 http://www.mcponline.org/content/7/9/1609.full.pdf+html
The co-translocation of ERp57 and calreticulin determines the immunogenicity of cell death
Panaretakis T, Joza N, Modjtahedi N, Tesniere A, Vitale I, Durchschlag M, Fimia GM, Kepp O, Piacentini M, Froehlich KU, van Endert P, Zitvogel L, Madeo F, Kroemer G. Cell Death & Differentiation, September 2008; 15(9): 1499-509 Proteome analysis of abundant proteins in two age groups of early Atlantic cod (Gadus
morhua) larvae
Hólmfrídur Sveinsdóttira, Oddur Vilhelmssonb and Ágústa Gudmundsdóttir Comparative Biochemistry and Physiology Part D: Genomics and Proteomics, September 2008; 3(3): 243-250
Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf
proteome analysis by two-dimensional electrophoresis.
Ana M. Maldonado, Sira Echevarría-Zomeño, Sylvia Jean-Baptiste, Martha Hernández, Jesús V. Jorrín-Novo Journal of Proteomics, 7 October 2008; 71(4): 461-472 Proteomic Analysis of Mouse Hypothalamus under Simulated Microgravity.
Poonam Sarkar, Shubhashish Sarkar, Vani Ramesh, Helen Kim, Stephen Barnes, Anil Kulkarni, Joseph C. Hall, Bobby L. Wilson, Renard L. Thomas, Neal R. Pellis, and Govindarajan T. Ramesh �eurochem Research, November 2008; 33(11): 2335–2341. In Vivo Interactome of Helicobacter pylori Urease Revealed by Tandem Affinity Purification
Kerstin Stingl, Kristine Schauer, Chantal Ecobichon, Agnès Labigne, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane and Hilde de Reuse Molecular & Cellular Proteomics, 1 December 2008; 7(12): 2429-2441. Proteomic analysis of the porcine platelet proteome and alterations induced by thrombin
activation
Gloria Esteso, María Isabel Mora, Juan José Garrido, Fernando Corrales and Ángela Moreno Journal of Proteomics, December 2008; 71(5): 547-560 In Vivo Interactome of Helicobacter pylori Urease Revealed by Tandem Affinity Purification
Kerstin Stingl, Kristine Schauer, Chantal Ecobichon, Agnès Labigne, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane and Hilde de Reuse Molecular & Cellular Proteomics, December 2008; 7(12): 2429-2441 A unified sample preparation protocol for proteomic and genomic profiling of cervical swabs
to identify biomarkers for cervical cancer screening
Janet S. Rader, James P. Malone, Julia Gross, Petra Gilmore, Rebecca A. Brooks, Loan Nguyen, Dan L. Crimmins, Sheng Feng, Jason D. Wright, Nicholas Taylor, Israel Zighelboim, Margo C. Funk, Phyllis C. Huettner, Jack H. Ladenson, David Gius, R. Reid Townsend Proteomics - Clinical Applications, December 2008; 2(12): 1658 - 1669 2D Difference Gel Electrophoresis of Prepubertal and Pubertal Rat Mammary Gland
Proteomes.
Helen Kim, Mark B. Cope, Richie Herring, Gloria Robinson, Landon Wilson, Grier P. Page and Stephen Barnes J. Proteome Research, November 2008; 7 (11): 4638–4650. Detection and Proteomic Identification of S-�itrosated Proteins in Human Hepatocytes Laura M. López-Sánchez, Fernando J. Corrales, Manuel De La Mata, Jordi Muntané, Antonio Rodríguez-Ariza Methods in Enzymology, 2008; 440: 273-281
2007. Evaluation of an in vitro model of androgen ablation and identification of the androgen
responsive proteome in L�CaP cells
John G. Rowland, Joanne L. Robson, William J. Simon, Hing Y. Leung, Antoni R. Slabas Proteomics, January 2007; 7(1): 47-63 Proteomic analysis of human very low-density lipoprotein by two-dimensional gel
electrophoresis and MALDI-TOF/TOF
Carmine Mancone, Laura Amicone, Gian Maria Fimia, Elena Bravo, Mauro Piacentini, Marco Tripodi, Tonino Alonzi Proteomics, January 2007; 7(1): 143-154 Conifer defense against insects: Proteome analysis of Sitka spruce (Picea sitchensis) bark
induced by mechanical wounding or feeding by white pine weevils (Pissodes strobi)
Dustin Lippert, Sunita Chowrira, Steven Gregory Ralph, Jun Zhuang, Dana Aeschliman, Carol Ritland, Kermit Ritland, Jörg Bohlmann Proteomics, January 2007; 7(2): 248-270 Streamlining Plant Sample Preparation: The Use of High-Throughput Robotics to Process
Echinacea Samples for Biomarker Profiling by MALDI-TOF Mass Spectrometry
S. A. Schwartz, I. Issac, L. A. Greene, J. R. Guthrie, and D. Gray J Biomol Techniques, February 2007; 18(1): 12. PMCID: PMC2291972 P77-M Automated Analysis of Gel-Derived Phosphoproteins Using the Investigator Proteomic
System
D. A. Moraga, M. C. Chow, I. Isaac, and S. M. Stevens, Jr. J Biomol Techniques, February 2007; 18(1): 26. PMCID: PMC2292004 P187-S Differential Proteome Analysis of the Cerebrospinal Fluid of �ormal and Equine
Protozoal Myeloencephalitis Affected Horses Using Two-Dimensional Fluorescence Difference
Gel Electrophoresis and Mass Spectrometry
D. E. Terry, M. Levy, I. Isaac, and N. Sharma J Biomol Techniques, February 2007; 18(1): 65. PMCID: PMC2291949
Identification of Proteomic Changes during Differentiation of Adult Mouse Subventricular
Zone Progenitor Cells.
Kamran Salim, Paul C. Guest, Heather A. Skynner, James G. Bilsland, Timothy P. Bonnert, George McAllister, Ignacio Munoz-Sanjuan. Stem Cells and Development, March 2007; 16(1): 143-166. Proteomics of Medicago truncatula.
Satish Nagaraj, Zhentian Lei, Bonnie Watson, Lloyd Sumner, Karine Gallardo, Eliane Dumas-Gaudot, Ghislaine Recorbet, Frank Robert, Odile Thiery, Benoît Valot, Ulrike Mathesius, Karsten Oelkers In: Medicago truncatula Handbook, Version March 2007; p.1-59. https://www.noble.org/MedicagoHandbook/pdf/Proteomics.pdf
�europroteomic Analysis of Chronic Methamphetamine Treatment in Rat Cortex
F Kobeissy, JL Cadet, D Graham, I Isaac, N Sharma, M. Chow, N. Boyle, M. S. Gold, K. K. K. Wang. Abstract, 55 th ASMS Conference Proceedings, 2007. �eurogenesis and major depression: implications from proteomic analyses of hippocampal
proteins in a rat depression model
Jun Mu, Peng Xie, Ze-Song Yang, De-Lan Yang, Fa-Jin Lv, Tian-You Luo and Yong Li �euroscience Letters, April 2007; 416(3): 252-256 The murine plasma protein response to polymicrobial intra-abdominal sepsis.
Jonathan E. McDunn, R. Reid Townsend, J. Perren Cobb Proteomics- Clinical Applications, April 2007; 1(4): 373–386 Pulmonary Biomarkers Based on Alterations in Protein Expression after Exposure to Arsenic
R. Clark Lantz, Brandon J. Lynch, Scott Boitano, Gerald S. Poplin, Sally Littau, George Tsaprailis, and Jefferey L. Burgess Environ Health Perspecives, April 2007; 115(4): 586-59 Manganese Porphyrin Reduces Renal Injury and Mitochondrial Damage during Ischemia
Reperfusion. Hamida Saba, Ines Batinic-Haberle, Shankar Munusamy, Tanecia Mitchell, Cheryl Lichti, Judit Megyesi, and Lee Ann MacMillan-Crow
Free Radic Biol Medicine, 15 May 2007; 42(10): 1571–1578 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1924492/pdf/nihms22617.pdf
�ew pleiotropic effects of eliminating a rare tR�A from Streptomyces coelicolor, revealed by
combined proteomic and transcriptomic analysis of liquid cultures.
Andy Hesketh, Giselda Bucca, Emma Laing, Fiona Flett, Graham Hotchkiss, Colin P Smith, and Keith F Chater BMC Genomics, 2 August 2007; 8: 261. http://www.biomedcentral.com/content/pdf/1471-2164-8-261.pdf Searchable High-Resolution 2D Gel Proteome of the Human Colon Crypt.
Bhavinkumar B. Patel, Xin-Ming Li, Maketa P. Dixon, Elena L. Blagoi, Steven H. Seeholzer, Yibai Chen, C. Glenn Miller, Yin A. He, Mazell Tetruashvily, Anam H. Chaudhry, Eileen Ke, Joan Xie, Harry Cooper, Alfonso Bellacosa, Margie L. Clapper, Bruce M. Boman, Tao Zhang, Samuel Litwin, Eric A. Ross, Peggy Conrad, James A. Crowell, Levy Kopelovich, Alfred Knudson, and Anthony T. Yeung J Proteome Research, June 2007; 6(6): 2232-2238. Proteome analysis of the Atlantic salmon (Salmo salar) cell line SHK-1 following recombinant
IF�- stimulation.
Samuel A. M. Martin, Bimal P. Mohanty, Phillip Cash, Dominic F. Houlihan, Christopher J. Secombes Proteomics, June 2007; 7(13): 2275 – 2286
Proteome analysis of chemically induced mouse liver tumors with different genotype.
Julia Strathmann, Krisztina Paal, Carina Ittrich, Eberhard Krause, Klaus E. Appel, Howard P. Glauert, Albrecht Buchmann, Michael Schwarz Proteomics, September 2007; 7(18): 3318 - 3331 The salivary glands and saliva of Anopheles gambiae as an essential step in the Plasmodium
life cycle: A global proteomic study
Valérie Choumet, Annick Carmi-Leroy, Christine Laurent, Pascal Lenormand, Jean-Claude Rousselle, Abdelkader Namane, Charles Roth, Paul T. Brey Proteomics, September 2007; 7(18): 3384-3394 14-3-3 Proteins Within the Hypothalamic-�eurohypophyseal System of the Osmotically
Stressed Rat: Transcriptomic and Proteomic Studies.
S. S. Gouraud, S. T. Yao, K. J. Heesom, J. F. R. Paton, D. Murphy Journal of �euroendocrinology, November 2007; 19(11): 913–922, Identification and validation of novel CSF biomarkers for early stages of Alzheimer's disease.
Yan Hu, Ava Hosseini, John S. K. Kauwe, Julia Gross, Nigel J. Cairns, Alison M. Goate, Anne M. Fagan, R. Reid Townsend, David M. Holtzman Proteomics- Clinical Applications,, November 2007; 1(11): 1373–1384
Towards a global analysis of porcine alveolar macrophages proteins through two-dimensional
electrophoresis and mass spectrometry. Eva Pérez-Reinado, María Ramírez-Boo, Juan J. Garrido, Jesús V. Jorrín, Ángela Moreno Developmental & Comparative Immunology, December 2007; 31(12): 1220-1232 2D Gel Proteomics An Approach to Study Age-Related Differences in Protein Abundance or
Isoform Complexity in Biological Samples
Helen Kim, Shannon Eliuk, Jessy Deshane, Sreelatha Meleth, Todd Sanderson, Anita Pinner, Gloria Robinson, Landon Wilson, Marion Kirk and Stephen Barnes Methods in Molecular Biology, Biological Aging, 2007; 371: 349-391
Proteomic Data Exchange and Storage Using Proteios.
Per Gärdén and Rikard Alm In: Methods in Molecular Biology, 1, Mass Spectrometry Data Analysis in Proteomics, 2007; 367: 241-259
2006. Detection of gender differences in rat lens proteins using 2-D-DIGE.
Paul C. Guest Dr., Heather A. Skynner, Kamran Salim, F. David Tattersall, Michael R. Knowles, John R. Atack Proteomics, January 2006; 6(2): 667–676
High Throughput Protein Identification Using 2-Dimensional Difference Gel Electrophoresis
and Robotic Spot Picking for Aluminum Tolerance-Related Maize Root Tip Proteins
Theodore Thannhauser, Yong Yang, S. Zhang, Robert Sherwood, Issa Isaac Journal of American Society for Mass Spectrometry, January 2006; 17(1): 46 Growth-induced changes in the proteome of Helicobacter pylori.
Christina Uwins, Christian Deitrich, Evelyn Argo, Elizabeth Stewart, Ian Davidson, Phil Cash Electrophoresis, March 2006; 27(5-6): 1136-1146
Defining the Role of the Escherichia coli Chaperone SecB Using Comparative Proteomics
Louise Baars, A. Jimmy Ytterberg, David Drew, Samuel Wagner, Claudia Thilo, Klaas Jan van Wijk, and Jan-Willem de Gier J. Biol. Chemistry, 14 April 2006; 281(15): 10024-10034 Analysis of porcine peripheral blood mononuclear cells proteome by 2-DE and MS: Analytical
and biological variability in the protein expression level and protein identification
María Ramirez-Boo, Juan J. Garrido, Samuel Ogueta, Juan J. Calvete, Consuelo Gómez-Díaz, Ángela Moreno Proteomics, April 2006; 6(Suppl.1): S215-S225 Proteome of amyloplasts isolated from developing wheat endosperm presents evidence of
broad metabolic capability
Yves Balmer, William H Vensel, Frances M DuPont, Bob B Buchanan and William J Hurkman Journal of Experimental Botany, April 2006; 57(7): 1591-1602
Urinary β2-Microglobulin Is Associated With Acute Renal Allograft Rejection William S. Oetting, Tyson B. Rogers, Thomas P. Krick, Arthur J. Matas, Hassan N. Ibrahim American Journal of Kidney Diseases, May 2006; 47(5): 898-904
Functional analysis of the nuclear proteome of human A549 alveolar epithelial cells by HPLC-
high resolution 2-D gel electrophoresis.
Jeffery Forbus, Heidi Spratt, John Wiktorowicz, Zheng Wu, Istvan Boldogh, Larry Denner, Alexander Kurosky, Robert C. Brasier, Bruce Luxon, Allan R. Brasier Proteomics, May 2006; 6(9): 2656 – 2672 (ProPic and ProPrep)
Proteome analysis of the phenotypic variation process in Photorhabdus luminescens.
Evelyne Turlin, Géraldine Pascal, Jean-Claude Rousselle, Pascal Lenormand, Saravuth Ngo, Antoine Danchin, Sylviane Derzelle Proteomics, May 2006; 6(9): 2705-2725
Lipopolysaccharide-responsive phosphoproteins in 2icotiana tabacum cells
I.B. Gerber, K. Laukens, E. Witters and I.A. Dubery Plant Physiology and Biochemistry, May-June 2006; 44(5-6): 369-379
Comparative Proteome Analysis of Laboratory Grown Brucella abortus 2308 and Brucella
melitensis 16M.
Michel Eschenbrenner, Troy A. Horn, Mary Ann Wagner, Cesar V. Mujer, Tabbi L. Miller-Scandle, and Vito G. DelVecchio J. Proteome Research, July 2006; 5 (7): 1731–1740
Proteomic analysis identifies alterations in cellular morphology and cell death pathways in
mouse brain after chronic corticosterone treatment.
Heather A. Skynner, Doran P. Amos, Fraser Murray, Kamran Salim, Michael R. Knowles, Ignacio Munoz-Sanjuan, Luis M. Camargo, Timothy P. Bonnert and Paul C. Guest Brain Research, 2 August 2006; 1102(1): 12-26 Identification of Early Proteomic Markers for Hepatic Steatosis.
G. Meneses-Lorente, A. Watt, K. Salim, S. J. Gaskell, Nagaraja Muniappa, Jeffrey Lawrence, and P. C. Guest Chem. Res. Toxicology, August 2006; 19(8): 986–998 Changes in protein expression in the rat medial vestibular nuclei during vestibular
compensation
Janet M Paterson, Duncan Short, Peter W Flatman, Jonathan R Seckl, Alastair Aitken, and Mayank B Dutia J Physiology, 15 September 2006; 575(3): 777–788. Published online 2006 July 6. An integrated proteomic workflow for two-dimensional differential gel electrophoresis and
robotic spot picking.
Ryan C. Mahnke, Todd H. Corzett, Sandra L. McCutchen-Maloney, and Brett A. Chromy. J Proteome Research, September 2006; 5(9):2093-2097 Comparative proteomic analysis of two Entamoeba histolytica strains with different virulence
phenotypes identifies peroxiredoxin as an important component of amoebic virulence
Paul H. Davis, Xiaochun Zhang, Jianhua Guo, R. Reid Townsend and Samuel L. Stanley, Jr Molecular Microbiology, September 2006; 61(6): 1523-1532 Proteomic Studies of the Intrinsically Unstructured Mammalian Proteome.
Charles A. Galea, Vishwajeeth R. Pagala, John C. Obenauer, Cheon-Gil Park, Clive A. Slaughter, and Richard W. Kriwacki J. Proteome Research, October 2006; 5(10): 2839–2848
Viability
Inventors: Antoni Ryszard Slabas, Stephen Chivasa, Bongani Kaiser Ndimba, Keith Lindsey, US Patent Application: US 2006/0265776 Al, Publication Date: 23 November 2006
An Initial Proteomic Analysis of Human Preterm Labor: Placental Membranes.
R. Hussain Butt, Maggie W. Y. Lee, S. Ahmadi Pirshahid, Peter S. Backlund, Stephen Wood, and Jens R. Coorssen J. Proteome Research, November 2006; 5(11): 3161–3172 Hexadecanedionic Acid−Sepharose 4B: A �ew Tool for Preparation of Albumin-Depleted
Plasma.
Vukic Soskic, Gerhard Schwall, Elke Nyakatura, Slobodan Poznanovic, Werner Stegmann, and Andre Schrattenholz J. Proteome Reseach, December 2006; 5(12): 3453–3458
2005. Differential signatures of protein expression in marmoset liver and thymus induced by single-
dose TCDD treatment.
Axel Oberemm, Christine Meckert, Linda Brandenburgea, Andrea Herzig, Yvonne Lindner, Kareen Kalenberg, Eberhard Krause, Carina Ittrich, Annette Kopp-Schneider, Ralf Stahlmann, Hans-Bernhard Richter-Reichhelm and Ursula Gundert-Remy Toxicology, 5 January 2005; 206(1): 33-48 Evolution of tissue-specific keratins as deduced from novel cD�A sequences of the lungfish
Protopterus aethiopicus.
Michael Schaffeld, Miriam Bremer, Christian Hunzinger, Jürgen Markl European Journal of Cell Biology, 9 March 2005; 84(2-3): 363-377 Application of Isotope Coded Affinity Tag (ICAT) Analysis for the Identification of
Differentially Expressed Proteins Following Infection of Atlantic Salmon (Salmo salar) with
Infectious Hematopoietic �ecrosis Virus (IH�V) or Renibacterium salmoninarum (BKD).
Booy A.T., J. D. Haddow, L. B. Ohlund, D. B. Hardie, and R. W. Olafson J. Proteome Research, March-April 2005; 4 (2): 325–334 Evidence that the Essential Response Regulator YycF in Streptococcus pneumoniae
Modulates Expression of Fatty Acid Biosynthesis Genes and Alters Membrane Composition
M. Luz Mohedano, Karin Overweg, Alicia de la Fuente, Mark Reuter, Silvia Altabe, Francis Mulholland, Diego de Mendoza, Paloma López, and Jerry M. Wells J. Bacteriology, April 2005; 187(7): 2357–2367. PMCID: PMC1065234 An Unbiased Cell Morphology–Based Screen for �ew, Biologically Active Small Molecules
Masahiro Tanaka, Raynard Bateman, Daniel Rauh, Eugeni Vaisberg, Shyam Ramachandani, Chao Zhang, Kirk C Hansen, Alma L Burlingame, Jay K Trautman, Kevan M Shokat, Cynthia L Adams PLoS Biology, May 2005; 3(5): e128. Published online 2005 April 5. PMCID: PMC1073692 Changes in the Extracellular Proteome Caused by the Absence of the bldA Gene Product, a
Developmentally Significant tR�A, Reveal a �ew Target for the Pleiotropic Regulator AdpA
in Streptomyces coelicolor
Dae-Wi Kim, Keith Chater, Kye-Joon Lee, and Andy Hesketh J Bacteriology, May 2005; 187(9): 2957–2966. PMCID: PMC1082842 Identification of midgut proteins that are differentially expressed in trypanosome-susceptible
and normal tsetse flies (Glossina morsitans morsitans) J.D. Haddow, L.R. Haines, R.H. Gooding, R.W. Olafson, T.W. Pearson
Insect Biochemistry and Molecular Biology, May 2005; 35(5): 425-433 Identification of mouse brain proteins associated with isoform 3 of metallothionein
David W. Lahti, John D. Hoekman, Abigail M. Tokheim, Bruce L. Martin, and Ian M. Armitage Protein Science, May 2005; 14(5): 1151–1157. PMCID: PMC2253260
Proteomic changes associated with inactivation of the Candida glabrata ACE2 virulence-
moderating gene.
David Stead, Helen Findon, Zhikang Yin, Janet Walker, Laura Selway, Philip Cash, Bernard A. Dujon, Christophe Hennequin, Alistair J. P. Brown, Ken Haynes Proteomics, May 2005; 5(7): 1838–1848 Postfractionation for Enhanced Proteomic Analyses: Routine Electrophoretic Methods
Increase the Resolution of Standard 2D-PAGE.
R. Hussain Butt and Jens R. Coorssen J. Proteome Research, May-June 2005; 4 (3): 982–991 Use of substances for treating tumors.
Inventors: Michael Cahill, D-Loerzweiler; Wqjciech Wozny, Nieder-Olm; Andre Schrattenholz; Helmut Klocker; Hermann Rogatsch (used Flexis) US Patent Application: US 2005/0130876; Publication Date: June 16, 2005. Comparative Secretome Analyses of Three Bacillus anthracis Strains with Variant Plasmid
Contents.
Janine M. Lamonica, MaryAnn Wagner, Michel Eschenbrenner, Leanne E. Williams, Tabbi L. Miller, Guy Patra, and Vito G. DelVecchio Infect Immunity, June 2005; 73(6): 3646–3658. CLPM: A Cross-Linked Peptide Mapping Algorithm for Mass Spectrometric Analysis
Yong Tang, Yingfeng Chen, Cheryl F Lichti, Roger A Hall, Kevin D Raney, and Steven F Jennings BMC Bioinformatics, 15 July 2005; 6(Suppl 2): S9. PMCID: PMC1637035 DAP12 (KARAP) amplifies inflammation and increases mortality from endotoxemia and
septic peritonitis
Isaiah R. Turnbull, Jonathan E. McDunn, Toshiyuki Takai, R. Reid Townsend, J. Perren Cobb, and Marco Colonna J Exp Medicine, 1 August 2005; 202(3): 363–369. PMCID: PMC2213081 WW Domains Provide a Platform for the Assembly of Multiprotein �etworks
Robert J. Ingham, Karen Colwill, Caley Howard, Sabine Dettwiler, Caesar S. H. Lim, Joanna Yu, Kadija Hersi, Judith Raaijmakers, Gerald Gish, Geraldine Mbamalu, Lorne Taylor, Benny Yeung, Galina Vassilovski, Manish Amin, Fu Chen, Liudmila Matskova, Gösta Winberg, Ingemar Ernberg, Rune Linding, Paul O'Donnell, Andrei Starostine, Walter Keller, Pavel Metalnikov, Chris Stark, and Tony Pawson Mol Cell Biology, August 2005; 25(16): 7092–7106. PMCID: PMC1190255 Proteomic Analysis of Head and �eck Squamous Cell Carcinomas B. Herr, M. Beachamp, M.W. Lingen Oral Surgery, Oral Medicine, Oral Pathology, Oral Radiology, and Endodontology, August 2005; 100(2): 191
Effects of growth phase and the developmentally significant bldA-specified tR�A on the
membrane-associated proteome of Streptomyces coelicolor.
Dae-Wi Kim, Keith F. Chater, Kye-Joon Lee and Andy Hesketh Microbiology, August 2005; 151(8): 2707-2720
Changes in the rR�A levels of specific microbial groups in activated sludge during sample
handling and storage.
J.E. Keith, J.G. Boyer, F.L. de los Reyes III Letters in Applied Microbiology, August 2005; 41(2): 208–215 32-31. Automation of In-gel Digestion and MALDI Spotting of Two-dimensional
Electrophoresis Separated Rat Liver Proteins
K. Tenz, R. Steenvoorden, E. Krause, K. Paal1, and A. Oberemm Molecular & Cellular Proteomics, August 2005; Human Proteome Organisation, 4th Annual World Congress, August 28–September 1, 2005, Munich, Abstract 32.31. S310 Seeing (and picking) spots.
Katie Cottingham Analytical Chemistry, 1 October 2005; 77(19): pp 395 A–399 A Functional Differentiation of Bundle Sheath and Mesophyll Maize Chloroplasts Determined
by Comparative Proteomics.
Wojciech Majeran, Yang Cai, Qi Sun, and Klaas J. van Wijka The Plant Cell, November 2005; 17(11): 3111–3140 Comparative Proteomic Analysis of Intra- and Interindividual Variation in Human
Cerebrospinal Fluid.
Yan Hu, James P. Malone, Anne M. Fagan, R. Reid Townsend and David M. Holtzman Molecular & Cellular Proteomics, 1 December 2005; 4(12): 2000-2009 Functional Differentiation of Bundle Sheath and Mesophyll Maize Chloroplasts Determined
by Comparative Proteomics
Wojciech Majeran, Yang Cai, Qi Sun, and Klaas J. van Wijk Plant Cell, November 2005; 17(11): 3111–3140. PMCID: PMC1276033
Proteomic Characterization of Yersinia pestis Virulence.
Brett A. Chromy, Megan W. Choi, Gloria A. Murphy, Arlene D. Gonzales, Chris H. Corzett, Brian C. Chang, J. Patrick Fitch, and Sandra L. McCutchen-Maloney
J Bacteriology, December 2005; 187(23): 8172–8180. PMCID: PMC1291254
Defining the Role of the Escherichia coli Chaperone SecB Using Comparative Proteomics.
Louise Baars, A. Jimmy Ytterberg, David Drew, Samuel Wagner, Claudia Thilo , Klaas Jan van Wijk and Jan-Willem de Gier The Journal of Biological Chemistry, 14 April 2006; 281(15): 10024-10034.
Identification of Components of Protein Complexes.
Carol E. Parker, Maria R. Warren, David R. Loiselle, Nedyalka N. Dicheva, Cameron O. Scarlett and Christoph H. Borchers Methods in Molecular Biology, Ubiquitin-Proteasome Protocols, 2005; 301(1): 117-151
2004. Proteomic analysis of protein changes developing in rat hippocampus after chronic
antidepressant treatment: Implications for depressive disorders and future therapies.
Xavier Khawaja, Jun Xu, Jin-Jun Liang, James E. Barrett J �euroscience Research, 15 February 2004; 75(4): 451-460 In-Depth Analysis of the Thylakoid Membrane Proteome of Arabidopsis thaliana
Chloroplasts: �ew Proteins, �ew Functions, and a Plastid Proteome Database
Giulia Friso, Lisa Giacomelli, A. Jimmy Ytterberg, Jean-Benoit Peltier, Andrea Rudella, Qi Sun, and Klaas J. van Wijk Plant Cell, February 2004; 16(2): 478–499. PMCID: PMC341918
Clp Protease Complexes from Photosynthetic and �on-photosynthetic Plastids and
Mitochondria of Plants, Their Predicted Three-dimensional Structures, and Functional
Implications.
Jean-Benoît Peltier, Daniel R. Ripoll, Giulia Friso, Andrea Rudella, Yang Cai, Jimmy Ytterberg, Lisa Giacomelli, Jaroslaw Pillardy and Klaas J. van Wijk The Journal of Biological Chemistry, 6 February 2004; 279(6): 4768-4781.
Protein Profiling using Two-Dimensional Gel Electrophoresis with Multiple Fluorescent Tags William A. Hanlon, Patrick R. Griffin In: Proteome Analysis, Interpreting the Genome. David W. Speicher Ed., Elsevier, March 2004; pp. 75-91 Pro-apoptotic Proteins Released from the Mitochondria Regulate the Protein Composition
and Caspase-processing Activity of the �ative Apaf-1/Caspase-9 Apoptosome Complex
Davina Twiddy, David G. Brown, Colin Adrain, Rebekah Jukes, Seamus J. Martin, Gerald M. Cohen, Marion MacFarlane, and Kelvin Cain J. Biol. Chemistry, 7 May 2004; 279(19): 19665-19682.
A Proteomic Investigation of Drug-Induced Steatosis in Rat Liver.
Georgina Meneses-Lorente, Paul C. Guest, Jeffrey Lawrence, Nagaraja Muniappa, Michael R. Knowles, Heather A. Skynner, Kamran Salim, Ileana Cristea, Russell Mortishire-Smith, Simon J. Gaskell, and Alan Watt Chem. Research in Toxicology, May 2004; 17 (5): 605–612 Protein profiling using two-dimensional gel electrophoresis with multiple fluorescent tags
William A. Hanlon and Patrick R. Griffin In: Proteome analysis: interpreting the genome David W. Speicher, Ed., Elsevier Amsterdam-San Diego, May 2004; pp. 75-92
High-throughput peptide mass fingerprinting of soybean seed proteins: automated workflow
and utility of UniGene expressed sequence tag databases for protein identification Brian P Mooney, Jay J Thelen Phytochemistry, June 2004; 65(12): 1733-1744
Proteomic characterization of host response to Yersinia pestis and near neighbors.
Brett A Chromy, Julie Perkins, Jenny L Heidbrink, Arlene D Gonzales, Gloria A Murphy, J.Patrick Fitch, Sandra L McCutchen-Maloney Biochemical and Biophysical Research Communications, 23 July 2004; 320(2): 474-479 Analyzing Alkaline Proteins in Human Colon Crypt Proteome.
Xin-Ming Li, Bhavinkumar B. Patel, Elena L. Blagoi, Maketa D. Patterson, Steven H. Seeholzer, Tao Zhang, Shirish Damle, Zhenqiang Gao, Bruce Boman, and Anthony T. Yeung J Proteome Research, July-August 2004; 3(4): 821-833.
Proteomic response to amino acid starvation in Candida albicans & Saccharomyces cerevisiae
Zhikang Yin, David Stead, Laura Selway, Janet Walker, Isabel Riba-Garcia, Tracey Mclnerney, Simon Gaskell, Stephen G. Oliver, Philip Cash, Alistair J. P. Brown Proteomics, August 2004; 4(8): 2425–2436 Regulation of Casein Kinase-2 (CK2) Activity by Inositol Phosphates.
Lev Solyakov, Kelvin Cain, Beryl M. Tracey, Rebekah Jukes, Andrew M. Riley, Barry V. L. Potter, and Andrew B. Tobin
J. Biol. Chemistry, October 15, 2004; 279(42): 43403-43410 �uclear Heat Shock Response and �ovel �uclear Domain 10 Reorganization in Respiratory
Syncytial Virus-Infected A549 Cells Identified by High-Resolution Two-Dimensional Gel
Electrophoresis
Allan R. Brasier, Heidi Spratt, Zheng Wu, Istvan Boldogh, Yuhong Zhang, Roberto P. Garofalo, Antonella Casola, Jawad Pashmi, Anthony Haag, Bruce Luxon, and Alexander Kurosky J Virology, November 2004; 78(21): 11461–11476. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC523268/
Structure based and combinatorially selected oligonucleoside phosphoro-thioate and
phosphorodithioate aptamer targeting ap-1 transcription factors.
Inventors: David G. Gorenstein, Bruce A. Luxon, James Leary US Paten Publication: US 2004/0265912 A1, Publication Date: 30 December 2004
Increasing Throughput and Data Quality for Proteomics.
Alfred L. Gaertner,Nicole L. Chow, Beth G. Fryksdale, Paul Jedrzejewski, Brian S. Miller, Sigrid Paech, David L.Wong In: Methods in Proteome and Protein Analysis, (Roza M. Kamp, Juna J. Calvete, Theodora Choli-Papadopoulou, Eds.) 2004; pp. 371-398. ISBN: 978-3-540-20222-6
Identification of proteins induced by polycyclic aromatic hydrocarbon in Mycobacterium
vanbaalenii PYR-1 using two-dimensional polyacrylamide gel electrophoresis and de novo
sequencing methods.
Seong-Jae Kim, Richard C. Jones, Chang-Jun Cha, Ohgew Kweon, Ricky D. Edmondson, Carl E. Cerniglia Proteomics, December 2004; 4(12): 3899–3908
2003. Bacillus anthracis secretome.
Guy Patra, Leanne E. Williams, Kathleen G. Dwyer, Vito G. Delvecchio In: Applications of Genomics and Proteomics for Analysis of Bacterial Biological Warfare Agents, IOS Press, V.G. DelVecchio & V. Krcmery Eds., January 2003; NATO Science Series, 352: 53-66 Directions in Automated Sample Preparation of Proteins. David A. Wells and David A. Weil LCGC, June 2003; 21(6), 522–538 Protein abundance quantification in embryonic stem cells using incomplete metabolic
labelling with 15
� amino acids, matrix-assisted laser desorption/ionisation time-of-flight mass
spectrometry, and analysis of relative isotopologue abundances of peptides.
Josef A. Vogt, Klaus Schroer, Kerstin Hölzer, Christian Hunzinger, Martina Klemm, Katja Biefang-Arndt, Simone Schillo, Michael A. Cahill, André Schrattenholz, Helmut Matthies, Werner Stegmann Rapid Communications in Mass Spectrometry, 30 June 2003; 17(12): 1273–1282 Multiplex proteomic analysis by two-dimensional differential in-gel electrophoresis.
Michael R. Knowles, Sandra Cervino, Heather A. Skynner, Stephen P. Hunt, Carmen de Felipe, Kamran Salim, Georgina Meneses-Lorente, George McAllister, Paul C. Guest Proteomics, July 2003; 3(7): 1162–1171
Evidence from proteomics that some of the enzymes of actinorhodin biosynthesis have more
than one form and may occupy distinctive cellular locations.
Andrew Hesketh and Keith F. Chater Journal of Industrial Microbiology & Biotechnology, August 2003; 30(8): 523-529
Evidence of Chemolithoautotrophy in the Bacterial Community Associated with Alvinella
pompejana, a Hydrothermal Vent Polychaete
Barbara J. Campbell, Jeffrey L. Stein, and S. Craig Cary Appl Environ Microbiology, September 2003; 69(9): 5070–5078. PMCID: PMC194926 Impact of prefractionation using Gradiflow™ on two-dimensional gel electrophoresis and
protein identification by matrix assisted laser desorption/ionization-time of flight-mass
spectrometry.
Lisa Pang, Beth G. Fryksdale, Nicole Chow, David L. Wong, Alfred L. Gaertner, Brian S. Miller Electrophoresis, October 2003; 24(19-20): 3484-3492
Directions in Automated Sample Preparation of Proteins.
David A. Wells and David A. Weil LC•GC Europe, November 2003; p. 2-9
Directions in Automated Sample Preparation of Proteins.
David A. Wells and David A. Weil PharmaGenomics, November/December 2003; p. 42-54
�ew on the Market: Proteomics 12/2003
Proteomics, December 2003; 3(12): 2497 – 2500
2002.
Painting with a molecular brush: Genomic/proteomic interfacing to define the drug action
profile of novel solid-tumor selective anticancer agents.
Alexander Nakeff, Nisha Sahay, Mike Pisano, Balanehru Subramanian Cytometry, 1 January 2002; 47(1): 72–79 �ew products for molecular biology.
PerkinElmer app. scientists Molecular Biotechnology, January 2002; 22(1): 103-109 Proteomic analysis of the endoplasmic reticulum from developing and germinating seed of
castor (Ricinus communis).
Daniel J. Maltman, William J. Simon, Colin H. Wheeler, Michael J. Dunn, Robin Wait and Antoni R. Slabas Electrophoresis, February 2002; 23(4): 626-639. Protein Kinase C ε Signaling Complexes Include Metabolism- and Transcription/Translation-
related Proteins Complimentary Separation Techniques With LC/MS/MS*S.
Ricky D. Edmondson, Thomas M. Vondriska, Kelli J. Biederman, Jun Zhang, Richard C. Jones, Yuting Zheng, David L. Allen, Joanne X. Xiu, Ernest M. Cardwell, Michael R. Pisano, Peipei Ping Molecular & Cellular Proteomics, 1 June 2002; 1(6): 421-433. Impact of deglycosylation methods on two-dimensional gel electrophoresis and matrix assisted
laser desorption/ionization-time of flight-mass spectrometry for proteomic analysis.
Beth G. Fryksdale, Paul T. Jedrzejewski, David L. Wong, Alfred L. Gaertner, Brian S. Miller Electrophoresis, July 2002; 23(14): 2184–2193 Alterations of stress related proteins in genetically altered mice revealed by two-dimensional
differential in-gel electrophoresis analysis.
Heather A. Skynner, Thomas W. Rosahl, Michael R. Knowles, Kamran Salim, Lee Reid, Rosa Cothliff, George McAllister, Paul C. Guest Proteomics, August 2002; 2(8): 1018–1025 Global analysis of the Brucella melitensis proteome: Identification of proteins expressed in
laboratory-grown culture.
Mary Ann Wagner, Michel Eschenbrenner, Troy A. Horn, Jo Ann Kraycer, Cesar V. Mujer, Sue Hagius, Philip Elzer, Vito G. DelVecchio Proteomics, August 2002; 2(8): 1047–1060
Comparative Proteome Analysis of Brucella melitensis Vaccine Strain Rev 1 and a Virulent
Strain, 16M.
Michel Eschenbrenner, Mary Ann Wagner, Troy A. Horn, Jo Ann Kraycer, Cesar V. Mujer, Sue Hagius, Philip Elzer, and Vito G. DelVecchio J Bacteriology, September 2002; 184(18): 4962–4970. PMCID: PMC135307 2001.
I�VESTIGATOR PROPIC ROBOTIC WORKSTATIO� LAU�CHED
Enterpreneur, Computer Workstations, February 2001
Product Review: Proteomics systems emerge. The first commercial products offer a variety of
approaches.
Judith Handley Analytical Chemistry, 1 July 2001; 73(13): 379 A–383 A
2-D Glasses. Scientists focus on proteomics with 2-D gel electrophoresis
The Scientist, 2001; 15(7): 23 PROTEI� SPOT PICKI�G FROM 2D GELS FOR MASS SPECTROMETRIC A�ALYSIS.
Importance of image resolution and XY positioning accuracy
Klaus Herick BIOforum, September 2001; 568-569. The Automation of Proteomics: technical and informatic solutions for high-throughout
protein analysis
M.R. Wilkins, In: Proteomics: From Protein Sequence to Function. S. R. Pennington, Michael J. Dunn, Eds. Taylor & Francis Publ., 2001; pp.176-181 (citing Flexis, a prototype for ProPic from Genomic Solutions)