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Public Health Case Reporting - CSTE TIG Lab Vocabulary Review
May 3rd Week – Viral Diseases
CRSWg, LMCoP, VMCoP
May 13th, 2010
04/19/23 1
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Archive of - 1st and 2nd Meeting Lab Vocabulary Review
04/19/23 2
Hyperlink: http://www.phconnect.org/profiles/blogs/call-for-volunteers-review
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Scope for 3rd Week of CSTE TIG - Lab Vocabulary Review
04/19/23 3
Focus mainly on HIV and Influenza
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Spreadsheet Overview
04/19/23 4
Note: Includes only the 2nd Week Bacterial Diseases Lab Vocabulary
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CSTE Position Statement
CSTE Position Statement not published in the CSTE website for the following conditions:
– Acute Hepatitis B
– Chronic Hepatitis B
Post the above mentioned CSTE position statements in www.phconnect.org
Need to find about the status of the above mentioned position statements (Did not review last year, Planning to review this year, etc..)
Reconcile the CSTE Position Statement and CSTE TIG criteria for the following conditions:
– Hantavirus
– HIV infection
– Dengue Fever
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Dengue Fever - CSTE Lab Criteria Conditionality
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Hantavirus Pulmonary Syndrome
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Pathology Impression Reconcile the Lab Criteria to CSTE TIG LOINC mappings
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Hantavirus Pulmonary Syndrome
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* increased circulating atypical lymphocytes or immature myeloid cells
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Hepatitis C- Lab Test + Date of Onset (Timing)
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Hepatitis C- Negative Test Criteria
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Assumption: Hepatitis C TIG File without any “Acute” or “Chronic” must have been related to Chronic.
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Hepatitis C- Acute and Chronic Lab Criteria (same)
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Acute Hepatitis C Chronic Hepatitis C
CSTE – Owner of Lab Criteria and could assign the ID’s for Lab Criteria
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Human Rabies
04/19/23 12
No LOINC / SNOMED Code
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Hepatitis B Chronic
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SNOMED Test Result – Pre-coordinated with Agent and Component
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HIV Infection
Review the CSTE Position Statement and CSTE TIG– Adult and Pediatric
– Qualitative and Quantitative
04/19/23 14
HIV CSTE Position StatementReview the CSTE TIG for HIVDiscuss with PHLIP regarding HIV mapping
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HIV Infection
PHLIP Feedback (Riki):
HIV TIG (Qualitative) tests DNA/RNA detection - LOINCs are all qual, no result codes included in one iteration, but coded to positive in the other - LOINCs are the same
HIV TIG Culture result - critrion reads any, no SNOMED cocdes assigned here, but lab cirterion cited in the spreadsheet is pos resut
HIV TIG Culture result - second criterion reads pos result - LOINC is Nom and result code is coded as HIV
HIV TIG Culture result criterion exisits twice with same set of LOINC codes
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Novel Influenza
Novel Influenza - Chest X-Ray Lab Tests mapped to "Non-subtypeable influenza A virus determined by WHO collaborating laboratory.”
Novel Influenza - Rapid Diagnostic Tests Criteria - No mapping to LOINC / SNOMED
Novel Influenza - Influenza A H1, Influenza A H3 do not have any mapping to LOINC / SNOMED
PHLIP Feedback:– Novel Influenza - Influenza A H1, Influenza A H3 and H1 2009 pandemic
do not have any mapping to LOINC / SNOMED (Have QL LOINCs now and PLR codes for nom Flu subtype test results
– Novel Influenza - shouldn't it be Flu A unsubtypable as result to report - exists as PLR code only
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Novel Influenza
SNOMED CT – Influenza A Virus
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Polio
04/19/23 18
NND Codes – Paralytic and Non-Paralytic Polio. What is the scope of CSTE position Statement?
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SARS
04/19/23 19
SARS Coronavirus – SNOMED Results
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Measles Virus
04/19/23 20
SNOMED Result - Measles Virus - Genotype
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Recommendation Letter to CSTE about CSTE TIG Lab Vocabulary
Include Changes that needs to be made in CSTE position Statements Mention the issues that are related to lab domain which would be
addressed by the lab community of practice and SDO (LOINC, SNOMED).
CSTE lab Criteria Interpretation issues Maintenance of the CSTE lab Criteria
– ?? Unique identifier for the lab criteria
– Centralized repository of data elements – Maintained by CSTE
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