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Publication of simulation models
Simulation model requiresnew type of publications!
How insure and facilitate reproducibility of simulation model
(like experimental sciences)?
EuroPhysiome Project communication problem:
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Printed journal
Advantages• It is archivable,
available in libraries.• It is the scientific
publication source.
Drawbacks • The extent of 10-15
pages in a typical journal is often insufficient for detailed description of a model.
• Confusing typographic errors can appear in equations and published graphs
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Webzine
Advantages• Unlimited extension is available
to detailed description of the model.
• It allows an interactive discussion
• It is searchable by internet technologies (like Google Scholar etc.)
Drawbacks • It is volatile – there’s no
guarantee that older issues are still available on the web.
• It is not available in libraries
• Therefore - it is not used as a primary scientific publication source.
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Webzine Journal
Advantages• Unlimited extension is
available to detailed description of the model.
• It allows an interactive discussion
Advantages• It is archivable, available
in libraries.• It is the scientific
publication source.
PHYSIOME WEBZINE JOURNAL should combine the advantages of both of these types of publication and eliminate their drawbacks
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Periodicallyfrozen into
printedjournalScientific article
Moderated web discussion
Physiome Webzine Journal
(obligatory appendix)Detailed model description(symbolic explanation all model equationscoefficients, values, initial conditions etc.)
Periodically into
DVD ROMfrozen
( optional appendices)
Source code, more detailed explanationof model assumption etc.
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PWJ - one of the EuroPhysiome publication tools?
Physiome Webzine Journal
BAJT servis publishing house & Charles University, Prague
Call for reviewers, papers for pilot issue
Initiative proposal