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TDWG 2003
P. Bryan Heidorn
University of Illinois
Digital Models for Taxonomic Description and TeleNature
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SelectionImageList.db
SpeciesPage.html
Definitions.db
Index.xml
BIBE Client
NumericMySQL
MakeIndex.java
Text eXist.db
SelectionList.db
BIBE SERVER
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SelectionImageList.db
SpeciesPage.html
Definitions.db
Index.xml
BIBE Client
NumericMySQL
MakeIndex.java
Text eXist.db
SelectionList.db
BIBE SERVER
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GrandTaxon.xml
Index.xml SpeciesPage.html
XSLTXSLTDefinitions.db
SelectionImageList.db
SelectionList.db
OpenKey
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<?xml version = "1.0" encoding = "UTF-8"?><!DOCTYPE Taxon SYSTEM "http://www.isrl.uiuc.edu/~openkey/shared/Taxon.dtd">
<!– Nomenclature Information --><Taxon> <Rank>species</Rank> <Nomenclature> <ScientificName>Amorpha canescens</ScientificName> <Authority> Pursh</Authority> <Vernacular>leadplant, false indigo</Vernacular> <Global_ID_number>25371</Global_ID_number> <Synonym> <ScientificName></ScientificName> <Authority></Authority> </Synonym> </Nomenclature> <ParentRank>genus</ParentRank> <ParentScientificName>Amorpha</ParentScientificName>
General Taxon Record
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<CharacterGroup name="plant_height_when_mature" file=“//openkey/…/character/xml/plant_height_when_mature.xml" type="size"> <Character name="usual_minimum"
file="/home/openkey/…/character/xml/usual_minimum.xml"> <State>3</State> </Character> <Character name="usual_maximum"
file="//openkey/…/character/xml/usual_maximum.xml"> <State>6</State> </Character> <Character name="absolute_maximum"
file="//openkey/…/character/xml/absolute_maximum.xml"> <State>10</State> </Character> </CharacterGroup></CharacterGroup>
Description: Number
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<CharacterGroup name="flowers" file="/home/openkey/…/characterGroup/xml/flowers.xml“<Image>http://www.isrl.uiuc.edu/~openkey/images/krrobert/webReady/amorcane.flowers.macro.exp2.jpg</Image>
<CharacterGroup name="perianth" file="/home/openkey/…/character/xml/perianth.xml">
<CharacterGroup name="petal" file="/home/openkey/…/character/xml/petal.xml">
<Character name="number" file="/home/openkey/…character/xml/number.xml" type="count">
<State>1</State> </Character> <Character name="color"
file="/home/openkey/…/character/xml/color.xml"> <State file="/home/openkey/…/state/xml/purple.xml">purple</State> </Character> </CharacterGroup> </CharacterGroup>
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GrandTaxon.xml
Index.xml SpeciesPage.html
XSLTXSLT
CharacterGroup.xml Character.xml State.xml Image.xml
TaxonEditor
Image
OpenKey
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Character group
• Name
• Images
• Legal Value List – pointers to Character.xml
• Definition
• Semantic Relations (Synonyms, …)
• Display Information
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<CharacterGroup> <CharacterGroupName name="flowers"
file="/home/openkey/…characterGroup/xml/flowers.xml">flowers</CharacterGroupName>
<LegalValue name="inflorescence_position" file="/home/openkey/…/character/xml/inflorescence_position.xml">inflorescence position</LegalValue>
<LegalValue name="inflorescence_type" file="/home/openkey/…character/xml/inflorescence_type.xml">inflorescence type</LegalValue>… Many more here …
<Definition>Sexual reproduction apparatus of a plant</Definition> <Synonym></Synonym> <BroaderTerm></BroaderTerm> <NarrowerTerm></NarrowerTerm> <RelatedTerm></RelatedTerm> <DisplayBefore></DisplayBefore> <DisplayFor><strong>Flowers</strong>: </DisplayFor> <DisplayAfter>.<BR></DisplayAfter></CharacterGroup>
Flower Character group
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Character
• Same but
• Add type
• Add references to the Legal States
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<!-- # character defining the structure of each character of a taxon --><!-- # Started by Bryan Heidorn March 4, 2003 --><!-- # Updated by [email protected] September 15, 2003 --><!-- http://www.isrl.uiuc.edu/~openkey/shared/character.dtd -->
<!ELEMENT Character ((CharacterName, (LegalValue, Image*)*, Definition?, Synonym*, BroaderTerm*, NarrowerTerm*, RelatedTerm*),(DisplayBefore*, DisplayFor*, DisplayAfter*)*)>
<!ELEMENT CharacterName (#PCDATA)> <!ATTLIST CharacterName name CDATA #IMPLIED file CDATA #IMPLIED><!ELEMENT LegalValue (#PCDATA)> <!ATTLIST LegalValue name CDATA #IMPLIED file CDATA #IMPLIED><!ELEMENT Image (#PCDATA)> <!ATTLIST Image name CDATA #IMPLIED file CDATA #IMPLIED reason CDATA #IMPLIED>
(Semantic data follows)
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<!ELEMENT Definition (#PCDATA)><!ELEMENT Synonym (#PCDATA)><!ELEMENT BroaderTerm (#PCDATA)><!ELEMENT NarrowerTerm (#PCDATA)><!ELEMENT RelatedTerm (#PCDATA)>
<!-- Display Information -->
<!ELEMENT DisplayBefore (#PCDATA)><!ELEMENT DisplayFor (#PCDATA)><!ELEMENT DisplayAfter (#PCDATA)>
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XML document creation
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GrandTaxon.xml
Index.xml SpeciesPage.html
XSLTXSLT
CharacterGroup.xml Character.xml State.xml Image.xml
Image Tables
ImageMetaEditor
Convert.plImage.pl
Translator.pl
TaxonEditor
Imagemetadata.db
Image
OpenKey
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Definitions, selection lists and images?
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GrandTaxon.xml
Index.xml SpeciesPage.html
XSLTXSLT
CharacterGroup.xml Character.xml State.xml Image.xml
TaxonEditor
Definitions.db
SelectionImageList.db
SelectionList.db
Image
OpenKey
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GrandTaxon.xml
Index.xml SpeciesPage.html
XSLTXSLT
CharacterGroup.xml Character.xml State.xml Image.xml
Image Tables
ImageMetaEditor
Convert.plImage.pl
Translator.pl
TaxonEditor
Definitions.db
SelectionImageList.db
Imagemetadata.db
SelectionList.db
Image
OpenKey
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Email of volunteers will be accepted after the talk.
Graduate School of Library and Information Science University of Illinois at Urbana-Champaign
Banner image at left created from photography by Kenneth R. Robertson© K.R. Robertson, Illinois Natural History Survey