![Page 1: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/1.jpg)
What’s New for Jmol
Bob HansonSt. Olaf College, Northfield, MN
http://www.stolaf.edu/people/hansonr
20th Biennial Conference on Chemical EducationIndiana University
July 28, 2008
![Page 2: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/2.jpg)
File Reading
Quality
Scripting
Objects
Structure Modification
Analysis
![Page 3: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/3.jpg)
File Reading - Quality - Scripting
•Zap•Crystallographic Symmetry•Anisotropic Temp. Factors•Trajectory•Filter•Biomolecules
Objects - Structure Modification - Analysis
![Page 4: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/4.jpg)
File Reading - Quality - Scripting
•Zap•Crystallographic Symmetry•Anisotropic Temp. Factors•Trajectory•Filter•Biomolecules
Objects - Structure Modification - Analysis
![Page 5: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/5.jpg)
File Reading - Quality - Scripting
•Hermite Level
•Sheet Smoothing
•Antialiasing
•Calculate Aromatic
•Font Scaling
•POVRAY
•Translucency
•User-Defined Color Schemes
Objects - Structure Modification - Analysis
![Page 6: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/6.jpg)
File Reading - Quality - Scripting
•Hermite Level
•Sheet Smoothing
•Antialiasing
•Calculate Aromatic
•Font Scaling
•POVRAY
•Translucency
•User-Defined Color Schemes
Objects - Structure Modification - Analysis
![Page 7: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/7.jpg)
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigate Mode
Objects - Structure Modification - Analysis
![Page 8: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/8.jpg)
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigate Mode
Objects - Structure Modification - Analysis
![Page 9: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/9.jpg)
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigation Mode
Objects - Structure Modification - Analysis
![Page 10: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/10.jpg)
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
![Page 11: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/11.jpg)
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
![Page 12: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/12.jpg)
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
![Page 13: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/13.jpg)
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate/Spin Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
![Page 14: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/14.jpg)
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate/Spin Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
![Page 15: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/15.jpg)
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
![Page 16: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/16.jpg)
File Reading - Quality - Scripting
•Data
•GetProperty
•Jmol Math
•User-Defined Variables
•Complex Measuring
•Write/Print
Objects - Structure Modification - Analysis
![Page 17: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/17.jpg)
![Page 18: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/18.jpg)
File Reading - Quality - Scripting
•Data
•GetProperty
•Jmol Math
•User-Defined Variables
•Complex Measuring
•Write/Print
Objects - Structure Modification - Analysis
![Page 19: What’s New for Jmol Bob Hanson St. Olaf College, Northfield, MN 20 th Biennial Conference on Chemical Education Indiana](https://reader036.vdocument.in/reader036/viewer/2022062423/56649f315503460f94c4d127/html5/thumbnails/19.jpg)
http://chemapps.stolaf.edu/quaternions/PISEMA/pisema.htm
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http://Jmol.ProteinExplorer.org
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Thank You!