ebi is an outstation of the european molecular biology laboratory. das implementations bernat gel...
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EBI is an Outstation of the European Molecular Biology Laboratory.
DAS implementations
Bernat Gel
01/03/11
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01/03/11DAS Implementations2
How do I DAS?
DAS enabled applications
DAS libraries
Clients Servers
ClientsServersJava, Perl Java, Perl, Javascript
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Ensembl
http://www.ensembl.org/
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Pfam
http://pfam.sanger.ac.uk/
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Spice
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http://www.dasregistry.org/spice/
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Dasty
http://www.ebi.ac.uk/dasty/
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Dalliance
http://www.biodalliance.org/
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GBrowse
http://gmod.org/wiki/Gbrowse
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And many more
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Jalview
IGB
The new EBI search
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Data Sources?
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DAS Servers
More than 750 DAS servers fom more than 50 organizations
Ensembl Uniprot
UCSC Many small groups
Most of them available at the DAS Registry
http://www.dasregistry.org
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BioMart
BioMarts are also DAS servers
http://www.biomart.org/
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What about MY data?
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easyDAS
http://www.ebi.ac.uk/panda-srv/easydas
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Libraries
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Clients
Bio::DAS::Lite
DASobert
JDAS
http://search.cpan.org/~rpettett/Bio-Das-Lite/
http://www.spice-3d.org/dasobert/index.jsp
http://code.google.com/p/jdas/
ttp://code.google.com/p/jsdas/jsDAS
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Servers
ProServer
MyDAS
Dazzle
http://sourceforge.net/projects/proserver/
http://code.google.com/p/mydas/
http://www.biojava.org/wiki/Dazzle
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Questions?